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https://edspace.american.edu/openbehavior/project/openeyetrack/

Project related to measurement of fast eye movement dynamics.Tracking eye position in head fixed applications system created by scientists from Boston University. Includes software tool as part of multithreaded eye tracker and Teledyne DALSA Camera with GigE-V framework APIs for Linux.

Proper citation: openEyeTrack project (RRID:SCR_021399) Copy   

•   Source: SciCrunch Registry
  

https://edspace.american.edu/openbehavior/project/stytra/

Project related to involvement in larval zebrafish behavioral experiments.Provides integrated system for stimulation, tracking and closed loop behavioral experiments. Provides timed stimulus presentation, interfacing with external devices and simultaneous real time tracking of behavioral parameters such as position, orientation, tail and eye motion in both freely swimming and head restrained preparations.

Proper citation: Stytra project (RRID:SCR_021416) Copy   

•   Source: SciCrunch Registry
  

https://github.com/jonnew/Oat

Software tool as real time position tracker for behavioral research. Used for processing images, extracting object position information, and streaming data to disk and/or the network in real time.

Proper citation: Online Animal Tracker (RRID:SCR_021412) Copy   

•   Source: SciCrunch Registry
  

https://edspace.american.edu/openbehavior/project/locowhisk/

Portable behavioural set up that incorporates both gait analysis (using pedobarograph) and whisker movements (using high speed video camera and infrared light source).Automatically records both whisker and gait information and provides added statistical tools to analyse data. LocoWhisk system includes ARTv2 software for simultaneous measurement of locomotion behaviours and whisker movements.

Proper citation: LocoWhisk project (RRID:SCR_021430) Copy   

•   Source: SciCrunch Registry
  

https://edspace.american.edu/openbehavior/project/head-fixed-setup-combined-behavior-electrophysiology-optogenetics/

Project related to temporally controlled rodent behavior. Provides system which utilizes optimal open source setup of hardware and software through behavioral setup for temporally controlled rodent behavior. Used for combined behavior, electrophysiology and optogenetics experiments. System allows for training of head fixed animals with calibrated sound stimuli, precisely timed fluid and air puff presentations as reinforcers.Combines microcontroller based behavior control with sound delivery system for acoustic stimuli, fast solenoid valves for reinforcement delivery and custom built sound attenuated chamber.

Proper citation: Head-Fixed Setup for Combined Behavior, Electrophysiology, and Optogenetics project (RRID:SCR_021427) Copy   

•   Source: SciCrunch Registry
  

https://edspace.american.edu/openbehavior/project/kinemouse-wheel/

Project is related to Columbia University designed KineMouse Wheel, light weight running wheel for head fixed locomotion that allows for 3D positioning of mice with single camera. System uses single camera and DeepLabCut (or similar) software.

Proper citation: KineMouse Wheel project (RRID:SCR_021425) Copy   

•   Source: SciCrunch Registry
  

https://edspace.american.edu/openbehavior/project/mousecam/

Project related to capturing detailed behavior in freely moving mice. System combines lightweight head mounted camera and head movement sensors to detect behaviors in mice. Used to monitor behaviors including eye position, whisking, and ear movements in unrestrained animals.Can be mounted in combination with neural implants for recording brain activity.Provides software Python package with functions for extracting and analyzing data recorded using camera.

Proper citation: Mousecam project (RRID:SCR_021422) Copy   

•   Source: SciCrunch Registry
  

https://github.com/cMadan/stl-toolbox

Software toolbox for visualizing and quantifying movement from pre-recorded videos.Used for summarizing animal movement data as single image ( spectral time lapse algorithm) as well as automate analysis of animal movement data.

Proper citation: Quantifying Animal Movement from Pre-recorded Videos (RRID:SCR_021515) Copy   

•   Source: SciCrunch Registry
  

https://github.com/ikodvanj/ratPASTA/

Software package for processing and visualising data from startle experiments in rodents or experiments measuring grip strength in rodents.

Proper citation: Platform for Acoustic STArtle (RRID:SCR_021516) Copy   

•   Source: SciCrunch Registry
  

https://github.com/MouseLand/facemap

Software toolbox for unsupervised video analysis of rodent behavior.Used for videographic processing of head fixed rodent behavior.

Proper citation: FaceMap (RRID:SCR_021513) Copy   

•   Source: SciCrunch Registry
  

https://github.com/kscottz/SkinnerBox

Software tool for data logging and analysis.

Proper citation: Skinner Box (RRID:SCR_021514) Copy   

•   Source: SciCrunch Registry
  

https://github.com/bonsai-rx/bonsai

Software tool as event based framework for processing and controlling data streams. Open source software tool as visual language for reactive programming.Used for composing reactive and asynchronous data streams coming from video cameras, microphones, electrophysiology systems or data acquisition boards.

Proper citation: Bonsai (RRID:SCR_021512) Copy   

•   Source: SciCrunch Registry
  

https://github.com/cortex-lab/Rigbox

Open source software MATLAB toolbox for running behavioral neuroscience experiments and managing data.Used for probing neurons and behavior. Used for managing behavioral neuroscience experiments and acquiring experiment related data.

Proper citation: Rigbox (RRID:SCR_021517) Copy   

•   Source: SciCrunch Registry
  

https://github.com/jpgill86/neurotic

Software Python toolbox for interactive characterization in neuroscience.Users can read in variety of file formats for neural data and video, which they can then process, filter, analyze, annotate and plot.Used to review and annotate signal data synchronized with video, performs simple initial analyses including signal filtering and spike detection, supports variety of file formats.Facilitates collaborations by using portable specification for loading and processing data and retrieving data files from online sources.App for Windows, macOS, and Linux to review and annotate electrophysiology data and simultaneously captured video.

Proper citation: neurotic (RRID:SCR_021406) Copy   

•   Source: SciCrunch Registry
  

https://github.com/yorambenshaul/optimouse

Software tool for analysis of mouse position data.Open source software to analyze positions of individual mice, specifically their nose positions, in behavioral arena with the goal of minimizing error.

Proper citation: Optimouse (RRID:SCR_021527) Copy   

•   Source: SciCrunch Registry
  

https://edspace.american.edu/openbehavior/project/robotic-flower-system-bee-behavior/

Portal provides system of robotic artificial flowers to study bumble bee behavior. System is designed to capture data when animal is feeding by placement of IR beams that are broken when engaged on flowers feeding mechanism and sends data to control unit.Developed by University of Oulu in Finland scientists. System includes control unit, separate artificial flowers, and personal computer. Control unit is to handle electronics of flowers, collect data from them, and to send data to computer. Flowers contain infrared sensor, their associated electronics, and electromechanical device that offers small, precise amount of sugar solution from reservoir. Computer runs software that controls refilling rate and data collection via the control unit. Circuit diagrams, parts list, and control software and source code are available in paper supplemental information.

Proper citation: Robotic Flower System for Bee Behavior project (RRID:SCR_021584) Copy   

•   Source: SciCrunch Registry
  

https://edspace.american.edu/openbehavior/project/training-mesoscale-imaging/

Project to build and use new generation of home cages with emphasis on training for simple headfixed tasks during simultaneous autonomous acquisition of mesoscale brain imaging data. Homecage platform for automated task training and mesoscale brain imaging for mice developed by University of British Columbia scientists.

Proper citation: Homecage Task Training and Mesoscale Imaging project (RRID:SCR_021580) Copy   

•   Source: SciCrunch Registry
  

https://edspace.american.edu/openbehavior/project/openmv/

Portal provides system capable of frame differencing, color tracking, marker tracking, face detection, eye tracking, person detection (with TensorFlow Lite), and more. Supports very easy to use GUI, the OpenMV IDE.

Proper citation: OpenMV project (RRID:SCR_021579) Copy   

•   Source: SciCrunch Registry
  

https://edspace.american.edu/openbehavior/project/tetroplater/

Portal provides open source circuit for microwire tetrode gold plating. Circuit includes impedance meter and current generator for tetrode gold plating. Developed by University of Toyama scientist.

Proper citation: Tetroplater (RRID:SCR_021578) Copy   

•   Source: SciCrunch Registry
  

https://edspace.american.edu/openbehavior/project/openspritzer/

Portal provides open hardware used in labs for administering picoliters of liquid to biological samples. Pressure ejection system developed by University of Sussex scientist for reliably delivering picolitre volumes.

Proper citation: OpenSpritzer (RRID:SCR_021575) Copy   

•   Source: SciCrunch Registry