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SciCrunch Registry is a curated repository of scientific resources, with a focus on biomedical resources, including tools, databases, and core facilities - visit SciCrunch to register your resource.
http://www.univ-bpclermont.fr/rubrique10.html
Blaise Pascal University, also known as Université Blaise Pascal, Clermont-Ferrand II or just Clermont-Ferrand II, was a public university with its main campus on 53 acres in Clermont-Ferrand, France, with satellite locations in other parts of the region of Auvergne, including Vichy, Moulins, Montluçon, and Aubière.
Proper citation: Blaise Pascal University; Clermont-Ferrand; France (RRID:SCR_011120) Copy
University of Bordeaux was founded in 1441 in France. The university is part of the Community of universities and higher education institutions of Aquitaine. It is one of the two universities in Bordeaux, with Bordeaux Montaigne University.
Proper citation: Bordeaux Segalen University; Bordeaux; France (RRID:SCR_011121) Copy
One of ten national laboratories overseen and primarily funded by the Office of Science of the U.S. Department of Energy (DOE), Brookhaven National Laboratory conducts research in the physical, biomedical, and environmental sciences, as well as in energy technologies and national security. Brookhaven Lab also builds and operates major scientific facilities available to university, industry and government researchers. Brookhaven is operated and managed for DOE''s Office of Science by Brookhaven Science Associates, a limited-liability company founded by Stony Brook University, the largest academic user of Laboratory facilities, and Battelle, a nonprofit, applied science and technology organization. Id=nlx_56211
Proper citation: Brookhaven National Laboratories; New York; USA (RRID:SCR_011123) Copy
https://www.netzsch-thermal-analysis.com/en/contract-testing/
Develops and manufactures complete high precision instrument line for thermal analysis and thermophysical properties measurement, as well as offering world class commercial testing services in our laboratories. Our instrumentation is employed for research and quality control in polymer sector, chemical industry, areas of inorganic and building materials, and environmental analysis.Customers of our laboratory services stem from wide range of large companies in industries such as chemical, automotive, electronics, air/space travel, racing, and polymer and ceramics.
Proper citation: NETZSCH Thermal Analysis Applications Laboratory (RRID:SCR_011003) Copy
http://genetics.emory.edu/research/?assetID=2087
A GUI software package for analysis of DNA methylation microarray data.
Proper citation: MethLAB (RRID:SCR_010957) Copy
http://rnbeads.bioinf.mpi-inf.mpg.de/
An R package for comprehensive analysis of DNA methylation data obtained with any experimental protocol that provides single-CpG resolution, including Infinium 450K microarray and bisulfite sequencing protocols, but also MeDIP-seq and MBD-seq., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025.
Proper citation: RnBeads (RRID:SCR_010958) Copy
http://www.buckinstitute.org/home
The Buck Institute is the nation''s first and only independent research facility focused solely on understanding the connection between aging and chronic disease. Our mission is to increase the healthy years of life. At the Buck Institute, world-class scientists work in a uniquely collaborative environment to understand how normal aging contributes to the development of conditions specifically associated with getting older such as Alzheimer''s and Parkinson''s disease, cancer, stroke and diabetes. Our interdisciplinary approach brings scientists from disparate fields together to develop diagnostic tests and treatments to prevent or delay these maladies. Unlike traditional universities, which have departmental boundaries and large bureaucracies, the Buck Institute is designed for the free flow of information. Discoveries quickly result in new studies. Scientists studying breast cancer are collaborating with researchers examining aging and nutrition. Parkinson''s disease is being studied in three different model organisms. A unique inquiry into stem cells and aging is underway. It''s an exciting place for science that has the potential to change the way we live.
Proper citation: Buck Institute; California; USA (RRID:SCR_011125) Copy
http://bioinfo.au.tsinghua.edu.cn/software/fastdma/
A software analyzing Illumina Infinium HumanMethylation450 BeadChip data, which is featured as multiple core parallel computing.
Proper citation: FastDMA (RRID:SCR_010954) Copy
A combined database and R package that allows you to investigate the methylation state of regions of interest across the genome.
Proper citation: Marmal-aid (RRID:SCR_010956) Copy
Biotechnology company focused on developing gene delivery products, by using its proprietary technologies. Specializes in custom viral vector manufacturing, focusing on Adeno-Associated Viruses (AAV), Adenoviruses, and Lentiviruses. Provides essential gene delivery tools and services to accelerate biomedical research, gene therapy development, and disease modeling.
Proper citation: Vector BioLabs (RRID:SCR_011010) Copy
State cabinet level agency within the government of California. The mission of CalEPA is to restore, protect and enhance the environment, to ensure public health, environmental quality and economic vitality.
Proper citation: California Environmental Protection Agency (RRID:SCR_011133) Copy
http://www.scienceexchange.com/facilities/precision-targeting-lab-ptl-llc
THIS RESOURCE IS NO LONGER IN SERVICE, documented on February 3rd, 2022. Provides mouse genetic services. PTL develops proprietary technologies for the production of transgenic and genetically modified mice. One of PTL''s key technologies increases gene targeting frequency from 0%-5% to 30%-60% in mouse ES cells. Improvement in gene targeting frequency speeds up the production process of genetically modified mouse models. This translates into less production cost and faster delivery of our products. Genetically modified mouse models are guaranteed for delivery within 12 months or less with PTL''s full gene targeting services.
Proper citation: Precision Targeting Lab LLC (RRID:SCR_011013) Copy
Public research university in Cardiff, Wales. Founded in 1883 as the University College of South Wales and Monmouthshire, it became a founding college of the University of Wales in 1893.
Proper citation: Cardiff University; Wales; United Kingdom (RRID:SCR_011135) Copy
http://biogrid-head.engr.uconn.edu/lasagna_search/
An integrated web tool for transcription factor binding site search and visualization. Both the Python Scripts for Offline Scanning and the Python implementation of the LASAGNA algorithm are available., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025.
Proper citation: LASAGNA-Search (RRID:SCR_010883) Copy
Software tool that predicts motifs in full-size peak sets. It performs all steps from motif discovery to visualization of the predicted sites in genome browsers., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025.
Proper citation: RSAT peak-motifs (RRID:SCR_010886) Copy
http://cisreg.cmmt.ubc.ca/TFFM/doc/
Software for Transcription Factor Flexible Models (TFFMs) that represent Transcription Factor Binding Sites (TFBSs) and are based on hidden Markov models (HMM). They are flexible and are able to model both position interdependence within TFBSs and variable length motifs within a single dedicated framework.
Proper citation: TFFM (RRID:SCR_010888) Copy
http://www.cs.ucr.edu/~polishka/
A command line software tool for accurate placing of the nucleosomes using a Modified Gaussian Mixture Model. It was designed to resolve overlapping nucleosomes and extract extra information (fuzziness, probability, etc.) of nucleosome placement. To achieve this goal the tool clusters the input tags according to Nucleosome Model (see the paper for detailed description) using EM learning process. The tool is written in C++. There are no special requirements except for g++ compiler and *nix environment to compile and use the tool. It was checked to compile using g++ compiler under Ubuntu 11.04 and Mac OS X 10.6
Proper citation: NOrMAL (RRID:SCR_010889) Copy
https://www.velescopharma.com/
Company mission is to consistently deliver quality, scientifically based, GMP compliant early drug development services. With our top-tier pharmaceutical industry talent, we will treat your compound as if it were our own.
Proper citation: Velesco Pharmaceutical Services (RRID:SCR_011066) Copy
http://www.stat.wisc.edu/~keles/Software/demo_Nucde.pdf
An R package mapping nucleosome-linker boundaries from both MNase-Chip and MNase-Seq data using a non-homogeneous hidden-state model based on first order differences of experimental data along genomic coordinates.
Proper citation: NucDe (RRID:SCR_010893) Copy
http://epigen.molgen.mpg.de/nuchunter/
Software for inferring nucleosome positions with their histone mark annotation from ChIP data. It is a versatile tool that can be used to predict positioned nucleosomes from one or multiple ChIP-seq bam files and it can be also used in conjunction with a control experiment.
Proper citation: NucHunter (RRID:SCR_010894) Copy
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