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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
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South Carolina Medical University Analytical Redox Biology Core Facility Resource Report Resource Website |
South Carolina Medical University Analytical Redox Biology Core Facility (RRID:SCR_017955) | access service resource, core facility, service resource | Core provides analytical redox biochemistry methods and mentoring support for COBRE junior faculty with goal to advance their research endeavors, publications and fundability. Specific aims are:Provide ROS /RNS identification and quantification, Perform quantitative analysis of ROS/RNS. Provides expertise and technology for in depth biochemical analysis of thiol-centered enzyme activities and define protein:protein interactions. | Analytical, redbox, biochemistry, method, mentoring, support, ROS, RNS, identification, quantification, analysis, thiol, centered, enzyme, activity, protein, interaction, service, core, ABRF | is listed by: ABRF CoreMarketplace | ABRF_987 | SCR_017955 | Analytical Redox Biology Core | 2026-09-19 12:59:35 | 0 | |||||||||
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Northwestern University School of Medicine Structural Biology Core Facility Resource Report Resource Website 1+ mentions |
Northwestern University School of Medicine Structural Biology Core Facility (RRID:SCR_017952) | access service resource, core facility, service resource | Core provides equipment, training, technical support, and maintenance of equipment for studying structures of biological macromolecules and materials. Serves with expertise in structural and computational biology. Services offered include Macromolecular Structure Determination and Analysis,Macromolecular crystallography at LS-CAT,Robotics equipment for crystallization experiments,UV crystal imaging capabilities,Software for structure analysis,Graphics facilities for visualization/presentation of molecular structures,Computer servers specialized for structural biology calculationss,Support and Training ,X-ray crystallography, from designing crystallization experiments to structure determination and refinemen,Molecular graphics for analysis and presentation,CryoEM and EM training.Resources Available:Crystallography Art Robbins, Inc. Phoenix and Gryphon crystallization robots,TTP Labtech Dragonfly liquid handler for crystal tray setup,Jansi UVEX UV/Vis microscope/imaging system,Stereomicroscopes (camera equipped, at room temperature and 4 degrees C),Incubators for temperature-controlled crystallization,Coordination of access to LS-CAT for Northwestern University users,CryoEM,JEOL 3200FS TEM equipped with in-column energy filter (omega filter), field emission gun capable of operating at 200 or 300 kV and Gatan K2 Summit Direct Electron Detector,JEOL 1400 with Gatan 4k x 4k Ultrascan CCD camera,Solarus Plasma Cleaner and Pelco easyGlow Discharge Cleaning System,Cressington 308R carbon coater,Gatan Cryoplunge 3 and FEI Vitrobot Mark IV,Gatan 626 cryoholders with 655 Turbo pump stations.Resources available Computational:50+ node cluster running Linux including several single- and multi-GPU nodes,7 Quad-core Intel Xeon 3.4GHz workstations (3D stereo equipped for visualization and model building) 3 Dual Quad-core Intel Xeon 3.5GHz workstations with GPU computing capabilities (3D stereo equipped for visualization, model building, and GPU computing),LTO6 writers for quick data backup,45 tape LTO6 system for continuous data backup,Over 200 Tb of disk storage including RAID systems,10 Gigabit fiber Ethernet connection to APS.Software Crystallography,CCP4 suite,PHENIX,SHARP,SOLVE,HKL2000,XDS,CryoEM,CryoSparc,Relion3,Leginon,cisTEM,Appion,NMR,CNS,FELIX,Aria Modeling, graphics, and simulations,COOT,Pymol,Chimera,APBS,GROMACS,AMBER,VMD/NAMD. | Medical, structural, biological, macromolecule, material, equipment, training, support, analysis, crystallography, UV, imaging, X-ray, service, core, ABRF | is listed by: ABRF CoreMarketplace | NCI P30 CA060553 | ABRF_946 | SCR_017952 | Structural Biology Core | 2026-09-19 12:59:35 | 2 | ||||||||
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University of Florida ICBR Gene Expression and Genotyping Core Facility Resource Report Resource Website 50+ mentions |
University of Florida ICBR Gene Expression and Genotyping Core Facility (RRID:SCR_019145) | access service resource, core facility, service resource | Core provides services and consultation on Single Cell RNA-Seq, RNA-Seq, 16s metagenomics and Affymetrix gene expression arrays. High-throughput RNA-seq libraries, 16s libraries and sequencing capture libraries can be done by using Agilent Bravo robot. QuantiGene RNA Assays measure up to 80 gene targets directly with degraded and cross-linked RNA in FFPE tissues and blood, with no RNA purification required.BioRad QX200 AutoDG Droplet Digital PCR System provides absolute quantification of target DNA or RNA molecules with greater precision and sensitivity than qPCR, sensitivity off ddPCR System can facilitate expanded analysis of single cells. Genotyping services include fragment analysis using AB3730, 96 capillary technology, development of microsatellite libraries using Illumina sequence data, and genotyping using mouse tails or ear punches. | USEDit, gene expression, genotyping, single cell RNAseq, PCR, qPCR, analysis, ABRF |
is listed by: ABRF CoreMarketplace has parent organization: University of Florida; Florida; USA |
ABRF_647 | https://coremarketplace.org/?FacilityID=647 | SCR_019145 | University of Florida ICBR Gene Expression and Genotyping, UF ICBR Gene Expression & Genotyping | 2026-09-19 12:59:37 | 68 | ||||||||
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Louisiana State University Pennington Biomedical Research Center Genomics Core Facility Resource Report Resource Website |
Louisiana State University Pennington Biomedical Research Center Genomics Core Facility (RRID:SCR_018675) | GCF | access service resource, core facility, service resource | Provides services which include Sanger and next-generation DNA sequencing,DNA fragment analysis,qualitative and quantitative analysis of DNA, protein, and RNA samples, quantitative PCR, microarray RNA labeling, hybridization, and scanning robotics,bioinformatics.Individual and small group training and consultation services are offered for sequence analysis, real-time PCR, next-generation sequencing and microarray analysis. | USEDit, Sanger sequencing, next generation DNA sequencing, DNA fragment analysis, quality, quantity, analysis, DNA, protein, RAN, qPCR, microarray RNA labeling, hybridization, scanning robotics, training, ABRF | is listed by: ABRF CoreMarketplace | NIDDK 2P30DK072476; NIGMS 1P30GM118430 |
Open | ABRF_434 | https://coremarketplace.org/?FacilityID=434 | SCR_018675 | Pennington Genomics Core, Pennington Biomedical Research Center Genomics Core | 2026-09-19 12:59:36 | 0 | |||||
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University of Massachusetts Medical School Metabolic Disease Research Center Core Facility Resource Report Resource Website 1+ mentions |
University of Massachusetts Medical School Metabolic Disease Research Center Core Facility (RRID:SCR_018672) | MMPC, UMass MMPC, MDRC | access service resource, core facility, service resource | UMass Metabolic Disease Research Center (MDRC), formerly the National Mouse Metabolic Phenotyping Center, is a core facility that performs standardized experiments using state-of-the-art equipment for the purpose of investigating transgenic mouse models of diabetes, obesity, and metabolic liver disease. Provides metabolic and functional characterization of mouse models of human diseases that are developed by academic and industry researchers in joint efforts to understand metabolic diseases and to identify new therapies. | UMass Chan Medical School, mouse model, human disease, diabetes, obesity, diabetic complication, phenotyping, metabolism, analysis, islet, cardiovascular, microbiome, humanized mouse cell transplantation, assessment, ABRF |
is listed by: ABRF CoreMarketplace has parent organization: University of Massachusetts Medical School; Massachusetts; USA |
NIDDK U2C DK093000 | Open | SCR_015366, ABRF_390 | https://coremarketplace.org/?FacilityID=390 | SCR_018672 | Massachusetts University Medical School Mouse Phenotyping Center Core Facility, UMass Medical School Metabolic Disease Research Center, National Mouse Metabolic Phenotyping Center, University of Massachusetts Medical School Mouse Phenotyping Center Core Facility, Massachusetts University Medical School National Mouse Metabolic Phenotyping Center | 2026-09-19 12:59:36 | 1 | |||||
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South Carolina Medical University Mass Spectrometry Core Facility Resource Report Resource Website 1+ mentions |
South Carolina Medical University Mass Spectrometry Core Facility (RRID:SCR_017959) | access service resource, core facility, service resource | Core provides expertise, services, education, and instrumentation to enhance biomedical research through LC-MS/MS-based proteomics. Services are offered for protein identification; characterization of post-translational modifications; and quantitative proteomics to identify differentially expressed/degraded proteins, regulated sites of post-translational modification, protein-protein interactions, and protein targets of drugs identified in phenotypic screens. Analyses include sample preparation, LC-MS/MS, database searching, generation of reports, and assistance with data interpretation. Faculty and staff assist with experimental design and development/optimization of customized methodology for analysis of post-translationally modified peptides (e.g. phosphorylation and O-GlcNAc modification, N- and O-linked glycosylation, Cys modifications including S-glutathionylation, and glycation of Lys and Arg). Quantitative approaches including metabolic labeling (SILAC), isobaric tagging (iTRAQ/TMT), and label free proteomics (LFQ) are performed on Orbitrap Elite or Orbitrap Fusion Lumos Mass Spectrometers. Developes methodology to identify alterations in post-translational modifications that impact signal transduction, transcription, translation, and response to therapeutics with goal of enabling investigators to discover molecular mechanisms underlying disease progression and therapeutic response. | Mass, spectrometry, expertise, service, education, instrumentation, proteomics, protein, identification, characterization, post translational, modification, target, drug, identification, phenotypic, screen, analysis, disease, service, core, ABRF | is listed by: ABRF CoreMarketplace | NIGMS P20 GM103542; NIH Office of the Director S10 OD010731 |
ABRF_985 | SCR_017959 | MUSC Mass Spectrometry Facility | 2026-09-19 12:59:35 | 1 | ||||||||
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Virginia Tech Mass Spectrometry Incubator Core Facility Resource Report Resource Website |
Virginia Tech Mass Spectrometry Incubator Core Facility (RRID:SCR_017956) | VT-MSI | access service resource, core facility, service resource | Facility supports Virginia Tech's research infrastructure as mass spectrometry analysis and education center. Provides training in sample preparation, instrument operation and data analysis, with strong emphasis on metadata and analytical requirements for publication of metabolomic and proteomic results. | Mass, spectrometry, incubator, education, training, sample, preparation, instrument, operation, data, analysis, metadata, metabolomics, proteomics, service, core, ABRF, USEDit |
is listed by: ABRF CoreMarketplace is related to: USEDit |
Restricted | ABRF_990 | SCR_017956 | Virginia Tech Mass Spectrometry Incubator | 2026-09-19 12:59:35 | 0 | |||||||
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Johns Hopkins University School of Medicine Genetic Resources Core Facility Resource Report Resource Website 50+ mentions |
Johns Hopkins University School of Medicine Genetic Resources Core Facility (RRID:SCR_018669) | GRCF | access service resource, core facility, service resource | Established to produce immortalized cell lines from human blood (EBV transformations). Offers genomics applications for single cells, including RNA-seq, gene expression profiling by qPCR and DNA amplification for whole-genome or targeted (exome or PCR-based analysis) through 10x Genomics Chromium platform (similar to Drop Seq). Offers custom genotyping to analyze short tandem repeats, variable number tandem repeats and single nucleotide polymorphisms. | USEDit, immortalized cell line production, human blood, RNAseq, gene expression profiling, qPCR, DNA amplification, exome, genome, PCR, analysis, ABRF |
is listed by: ABRF CoreMarketplace is related to: USEDit has parent organization: Johns Hopkins University; Maryland; USA |
ABRF_344 | https://grcf.jhmi.edu/grcf-services/ | https://grcf.jhmi.edu/biorepository-cell-center/ | SCR_018669 | GRCF Cell Center, Genetic Resources Core Facility, JHU-NAT, GRCF Biorepository and Cell Center, GRCF DNA Services, Genetic Resources Core Facility (GRCF) BioRepository and Cell Center, JHU Nucleic Acid Technologies, JHU BioBank | 2026-09-19 12:59:36 | 60 | ||||||
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University of Alberta Faculty of Medicine and Dentistry Cell Imaging Centre Core Facility Resource Report Resource Website 10+ mentions |
University of Alberta Faculty of Medicine and Dentistry Cell Imaging Centre Core Facility (RRID:SCR_019200) | FoMD | access service resource, core facility, service resource | Cell Imaging Centre provides services and training for imaging and analysis of live or fixed cells and tissues.Image acquisition equipment and expert consultation for experimental design related to light and electron microscopy are offered, with full technical assistance, from sample processing through image analysis. | USEDit, imaging, analysis, live cells, fixed cells, live tissues, fixed tissues, ABRF, ABRF |
is listed by: ABRF CoreMarketplace has parent organization: University of Alberta; Alberta; Canada |
Canada Foundation for Innovation ; Faculty of Medicine and Dentistry |
ABRF_1081 | https://coremarketplace.org/?FacilityID=1081 | https://www.ualberta.ca/medicine/research/corefacilities/cell-imaging-centre/index.html | SCR_019200 | Faculty of Medicine and Dentistry Cell Imaging Centre | 2026-09-19 12:59:38 | 24 | |||||
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Amino_acid_composition_and_hydrophobicity_analysis Resource Report Resource Website |
Amino_acid_composition_and_hydrophobicity_analysis (RRID:SCR_026281) | software resource, software toolkit, source code | Software package to analyze amino acid content and hydrophobicity profile of given set of protein sequences in fasta file. Used for analysis of amino acid composition and hydrophobicity of test sequences from fasta files. | Analysis, amino acid composition, hydrophobicity, test sequences, fasta files, | Free, Available for download, Freely available, | SCR_026281 | 2026-09-19 01:00:45 | 0 | |||||||||||
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Thermo Fisher: Ion Torrent Genexus Integrated Sequencer Resource Report Resource Website 1+ mentions |
Thermo Fisher: Ion Torrent Genexus Integrated Sequencer (RRID:SCR_026449) | instrument resource | Ion Torrent Genexus Integrated Sequencer is part of the Ion Torrent Genexus System. Instrument that can automate library construction, templating, and sequencing in single-instrument run. | sequencer, automate NGS library preparation, sequencing, analysis | https://raw.githubusercontent.com/SciCrunch/RRID-Instruments/main/PDF/SCR_026449.pdf | Model_Number_Genexus | SCR_026449 | Genexus Integrated Sequencer | 2026-09-19 01:00:49 | 1 | |||||||||
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FEI: Helios Nanolab 600i DualBeam Resource Report Resource Website |
FEI: Helios Nanolab 600i DualBeam (RRID:SCR_027033) | instrument resource | Scanning Electron Microscope advanced DualBeam for ultra-high resolution imaging, analysis and fabrication at the nanoscale. Helios NanoLab 600i builds on the success of FEI’s winning DualBeam series offering advances in ion beam, electron beam, patterning and range of features to make milling, imaging, analysis and sample preparation down to nanoscale. | Scanning Electron Microscope, imaging, analysis, nanoscale, microscope, electron microscope, | https://raw.githubusercontent.com/SciCrunch/RRID-Instruments/refs/heads/main/PDF/SCR_027033.pdf | Model_Number_Helios_NanoLab_600i | SCR_027033 | FEI Helios NanoLab 600i DuaBeam, , FEI Helios NanoLab 600i DuaBeam Scanning Electron Microscope, Helios NanoLab 600i | 2026-09-19 01:01:03 | 0 | |||||||||
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Shiny Resource Report Resource Website 500+ mentions |
Shiny (RRID:SCR_001626) | software resource, software toolkit | Open source R package that provides web framework for building web applications using R. Used to create interactive web apps in native R, without needing to use HTML, CSS, or JavaScript. | R, analysis, interactive, web, application |
uses: shinythemes is used by: ClustVis is used by: shinyGEO is used by: PlotsOfData is used by: shinyCircoss is used by: AlloMate is used by: VenomView is used by: bulkAnalyseR is used by: MiBiOmics is related to: rSPRITE is related to: EHRtemporalVariability is related to: robvis is related to: Omics Data Paper Generator is related to: Mitochondrial Neuron Ubiquitin is related to: chevreul is related to: Click-qPCR is related to: EMImR is related to: Mona has parent organization: RStudio works with: BoxPlotR works with: shinyhelper works with: ShinyCell works with: Breedverse works with: GenoBrew |
PMID:34642739 PMID:26225240 |
Free, Available for download, Freely available | nlx_153894 | SCR_001626 | 2026-09-22 09:51:29 | 590 |
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