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SciCrunch Registry is a curated repository of scientific resources, with a focus on biomedical resources, including tools, databases, and core facilities - visit SciCrunch to register your resource.

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Resource Name Proper Citation Abbreviations Resource Type Description Keywords Resource Relationships Related Condition Funding Defining Citation Availability Specification URL Alternate IDs Alternate URLs Old URLs Parent Organization Resource ID Synonyms Record Last Update Mentions Count
BrainColor: Collaborative Open Labeling Online Resource
 
Resource Report
Resource Website
1+ mentions
BrainColor: Collaborative Open Labeling Online Resource (RRID:SCR_006377) BrainCOLOR data or information resource, knowledge environment This resource was created to host descriptions of protocols, definitions and rules for the reliable identification and localization of human brain anatomy and discussions of best practices in brain labeling. Project for manual anatomical labeling of human brain MRI data, and the visual presentation of labeled brain images. atlas, curation, map, mapping, mri, image, brain, label, neurolabel, neuroanatomy is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC)
is related to: Neuromorphometrics
has parent organization: Columbia University; New York; USA
NIMH MH084029;
NIMH R43 MH084358
Free, Available for download, Freely available nif-0000-07727 https://www.binarybottle.com/braincolor/, https://github.com/binarybottle/braincolor http://www.braincolor.org/ SCR_006377 Neurolabels, Collaborative Open Labeling Online Resource, Neuroanatomical Labeling Methods 2026-09-12 01:00:56 3
TMF
 
Resource Report
Resource Website
TMF (RRID:SCR_004993) TMF data or information resource, organization portal, portal As an umbrella organization for medical research networks, the TMF is responsible for improving the organization and infrastructure of medical research in networked structures. It supports researchers at the various locations in jointly identifying and solving problems of an organizational, legal and technical nature that are often not associated with the particular clinical problem or research focus. The network not only focuses on legal and ethical frameworks for networked medical research but also on the development of IT infrastructure, quality management activities for science-initiated trials and questions on the intermeshing of research and patient care. Under the umbrella organization of the TMF, expert opinions, studies, concepts, requirements specifications, services and tools are created. The products of the cooperation within the TMF are available to the research community. The aims of joint work in the TMF are: * Improvement of medical research in terms of quality, organization and cooperation * Solution of questions spanning networked medical research, e.g. on the collection, processing and exchange of research data * Clarification of the legal and ethical foundations for performing medical research * Issues of quality assurance and quality management * Development and extension of efficient IT infrastructures and their implementation in cross-institutional networked structures * Realization of cross-location solutions * Contributions to sustainable and efficient health research by means of the improved transfer of research findings to patient care research, clinical, network, medical research, epidemiological, translational, information technology infrastructure, information technology, infrastructure is parent organization of: German Biobank Registry German Federal Ministry of Research and Education nlx_143998 SCR_004993 Technology Methods and Infrastructure for Networked Medical Research, TMF - Technology Methods and Infrastructure for Networked Medical Research, Technology Methods Infrastructure for Networked Medical Research 2026-09-12 01:00:55 0
Human Brain Atlas
 
Resource Report
Resource Website
1+ mentions
Human Brain Atlas (RRID:SCR_006131) Human Brain Atlas atlas, data or information resource, video resource A labeled three-dimensional atlas of the human brain created from MRI images. In conjunction are presented anatomically labeled stained sections that correspond to the three-dimensional MRI images. The stained sections are from a different brain than the one which was scanned for the MRI images. Also available the major anatomical features of the human hypothalamus, axial sections stained for cell bodies or for nerve fibers, at six rostro-caudal levels of the human brain stem; images and Quicktime movies. The MRI subject was a 22-year-old adult male. Differing techniques used to study the anatomy of the human brain all have their advantages and disadvantages. Magnetic resonance imaging (MRI) allows for the three-dimensional viewing of the brain and structures, precise spatial relationships and some differentiation between types of tissue, however, the image resolution is somewhat limited. Stained sections, on the other hand, offer excellent resolution and the ability to see individual nuclei (cell stain) or fiber tracts (myelin stain), however, there are often spatial distortions inherent in the staining process. The nomenclature used is from Paxinos G, and Watson C. 1998. The Rat Brain in Stereotaxic Coordinates, 4th ed. Academic Press. San Diego, CA. 256 pp human, adult, mri, fiber stain, anatomy, normal, neuroanatomy, nissl stain, image, brainstem, cell body, nerve fiber, brain, coronal, sagittal, horizontal, 3d model, montage, weil, hypothalamus is used by: NIF Data Federation
has parent organization: Michigan State University; Michigan; USA
NSF IBN 0131267;
NSF 0131826;
NSF 0131028
Copyrighted, Public, Request that you secure their permission, Acknowledgement required nif-0000-00088 SCR_006131 MSU Brain Biodiversity Bank - Human Brain Atlas, Michigan State University Brain Biodiversity Bank - Human Brain Atlas 2026-09-12 01:00:56 3
RIKEN integrated database of mammals
 
Resource Report
Resource Website
RIKEN integrated database of mammals (RRID:SCR_006890) RIKEN integrated database of mammals data or information resource, database, portal THIS RESOURCE IS NO LONGER IN SERVICE. Documented on August 16, 2019.
A database that integrates not only RIKEN''''s original large-scale mammalian databases, such as FANTOM, the ENU mutagenesis program, the RIKEN Cerebellar Development Transcriptome Database and the Bioresource Database, but also imported data from public databases, such as Ensembl, MGI and biomedical ontologies. Our integrated database has been implemented on the infrastructure of publication medium for databases, termed SciNetS/SciNeS, or the Scientists'''' Networking System, where the data and metadata are structured as a semantic web and are downloadable in various standardized formats. The top-level ontology-based implementation of mammal-related data directly integrates the representative knowledge and individual data records in existing databases to ensure advanced cross-database searches and reduced unevenness of the data management operations. Through the development of this database, we propose a novel methodology for the development of standardized comprehensive management of heterogeneous data sets in multiple databases to improve the sustainability, accessibility, utility and publicity of the data of biomedical information.
integration, network, standardization, biomedical, bio.tools is listed by: Debian
is listed by: bio.tools
is related to: Functional Annotation of the Mammalian Genome
is related to: Cerebellar Development Transcriptome Database
is related to: Ensembl
is related to: Mouse Genome Informatics (MGI)
is related to: OBO
has parent organization: RIKEN Yokohama Institute; Kanagawa; Japan
Japanese Ministry of Education Culture Sports Science and Technology MEXT PMID:21076152 THIS RESOURCE IS NO LONGER IN SERVICE nlx_151886, biotools:riken https://bio.tools/riken SCR_006890 2026-09-12 01:00:57 0
BRAIN Initiative
 
Resource Report
Resource Website
10+ mentions
BRAIN Initiative (RRID:SCR_006770) NIH BRAIN Initiative data or information resource, organization portal, portal Project aimed at revolutionizing understanding of human brain, to show how individual cells and complex neural circuits interact, enable rapid progress in development of new technologies and data analysis tools to treat and prevent brain disorders. BRAIN Initiative encourages collaborations between neurobiologists and scientists from disciplines such as statistics, physics, mathematics, engineering, and computer and information sciences. Institutes and centers contributing to NIH BRAIN Initiative support those research efforts. brain, connectomics, disorder, cell, neural, circuit, neurotechnology, data, repository, analysis uses: Single Cell Portal
recommends: Human Neocortical Neurosolver
recommends: Brain Gene Expression Analysis toolbox
recommends: clusterExperiment
recommends: BioWheel
recommends: iELVis
recommends: Mediation Analysis of Causality under Confounding
recommends: MCell
recommends: microMS
recommends: MIIVsem
recommends: MountainSort
recommends: Myriads
recommends: nelpy
recommends: NetPyNE
recommends: Neural Ideal
recommends: NEURON
recommends: Neuron Tools
recommends: Neuroscience Gateway
recommends: NUTMEG
recommends: PetaVision
recommends: PyNWB
recommends: pyRayleighCuda
recommends: ScanImage
recommends: Scope
recommends: Seizure-Waves
recommends: Silver Lab Microscopy Software
recommends: StimVision
recommends: TReNA
recommends: ALICE
recommends: BioImage Suite
recommends: EyeWire
recommends: GIMME
recommends: GMA
recommends: Homer2
recommends: Brain Image Library
recommends: Data Archive BRAIN Initiative
recommends: OpenNeuro
recommends: Brain Observatory Storage Service and Database (BossDB)
recommends: 1000 Functional Connectomes Project
recommends: FastProject
recommends: Autopatcher
recommends: cytoNet
recommends: DiffuserCam
recommends: gene Expression Analysis Resource
recommends: NeMOarchive
recommends: Distributed Archives for Neurophysiology Data Integration
recommends: NIDA Data Share
recommends: HED Tags
lists: University of North Carolina Neuroscience Center and the BRAIN Initiative Viral Vector Core Facility
is related to: Brain Image Library
is related to: OpenNeuro
is related to: Distributed Archives for Neurophysiology Data Integration
is related to: NeMO Analytics
is related to: Brainome portal
is related to: CEMBA MethylC Seq Pipeline
is related to: Seattle Alzheimer Disease Brain Cell Atlas
is related to: EBRAINS
is related to: Human Brain Variation Project
has parent organization: National Institutes of Health
is parent organization of: Data Archive BRAIN Initiative
is parent organization of: OpenNeuro
is parent organization of: Brain Observatory Storage Service and Database (BossDB)
is parent organization of: Ecosystem for Multi-modal Brain-behavior Experimentation and Research
has organization facet: 3D Developmental Mouse Brain Common Coordinate Framework
Alzheimer's disease, Schizophrenia, Autism, Epilepsy, Traumatic brain injury BRAIN Initiative nlx_155554 http://braininitiative.nih.gov/, http://www.whitehouse.gov/share/brain-initiative, http://en.wikipedia.org/wiki/BRAIN_Initiative SCR_006770 , Brain Research through Advancing Innovative Neurotechnologies Initiative, NIH Brain Research through Advancing Innovative Neurotechnologies Initiative 2026-09-12 01:00:57 24
Web Platform Docs
 
Resource Report
Resource Website
Web Platform Docs (RRID:SCR_006096) Web Platform Docs data or information resource, portal, project portal Web Platform Docs is a new community-driven site that aims to become a comprehensive and authoritative source for web developer documentation. Anyone can contribute and each person who does makes us stronger. Together we can continue to drive innovation on the Web to serve the greater good. WebPlatform project, supported by various stewards between 2012 and 2015, has been discontinued. Static archived version of github is available. web developer documentation, web developer, documentation, concept, html, css, accessibility, javascript, svg, chat, forum, developer, web Web Platform Stewards WebPlatform project, supported by various stewards between 2012 and 2015, has been discontinued. Static archived version of github is available. nlx_151566 http://www.webplatform.org/ SCR_006096 WebPlatform.org 2026-09-12 01:00:56 0
XSEDE - Extreme Science and Engineering Discovery Environment
 
Resource Report
Resource Website
10+ mentions
XSEDE - Extreme Science and Engineering Discovery Environment (RRID:SCR_006091) XSEDE data or information resource, portal XSEDE is a single virtual system that scientists can use to interactively share computing resources, data and expertise. People around the world use these resources and services things like supercomputers, collections of data and new tools to improve our planet. XSEDE resources may be broadly categorized as follows: High Performance Computing, High Throughput Computing, Visualization, Storage, and Data Services. Many resources provide overlapping functionality across categories. Scientists, engineers, social scientists, and humanists around the world - many of them at colleges and universities - use advanced digital resources and services every day. Things like supercomputers, collections of data, and new tools are critical to the success of those researchers, who use them to make our lives healthier, safer, and better. XSEDE integrates these resources and services, makes them easier to use, and helps more people use them. XSEDE supports 16 supercomputers and high-end visualization and data analysis resources across the country. Digital services, meanwhile, provide users with seamless integration to NSF''s high-performance computing and data resources. XSEDE''s integrated, comprehensive suite of advanced digital services will federate with other high-end facilities and with campus-based resources, serving as the foundation for a national cyberinfrastructure ecosystem. Common authentication and trust mechanisms, global namespace and filesystems, remote job submission and monitoring, and file transfer services are examples of XSEDE''s advanced digital services. XSEDE''s standards-based architecture allows open development for future digital services and enhancements. XSEDE also provides the expertise to ensure that researchers can make the most of the supercomputers and tools. data sharing, computing, supercomputer, data, tool, visualization, data analysis, cyberinfrastructure, digital service, high performance computing, high throughput computing, visualization, storage, data service is related to: Neuroscience Gateway
has parent organization: San Diego Supercomputer Center
NSF OCI-1053575 nlx_151554, grid.501421.3 https://ror.org/05524hb64 SCR_006091 XSEDE - Extreme Science Engineering Discovery Environment, Extreme Science and Engineering Discovery Environment 2026-09-12 01:00:56 29
epigenomix
 
Resource Report
Resource Website
1+ mentions
epigenomix (RRID:SCR_006407) epigenomix data processing software, software application, software resource Software package for the integrative analysis of microarray based gene expression and histone modification data obtained by ChIP-seq. The package provides methods for data preprocessing and matching as well as methods for fitting bayesian mixture models in order to detect genes with differences in both data types. epigenetic, gene expression, microarray, histone modification, chip-seq, classification, differential expression, bio.tools is listed by: OMICtools
is listed by: Debian
is listed by: bio.tools
has parent organization: Bioconductor
PMID:24403540 GNU Lesser General Public License, v3 biotools:epigenomix, OMICS_02205 https://bio.tools/epigenomix SCR_006407 epigenomix - Epigenetic and gene expression data normalization and integration with mixture models 2026-09-12 01:00:56 2
Mimas
 
Resource Report
Resource Website
1+ mentions
Mimas (RRID:SCR_006529) Mimas data or information resource, organization portal, portal Mimas is an organization of experts. Our role is to support the advancement of knowledge, powering world-class research and teaching. Technology is at the heart of everything we do. As a nationally designated data center, we host a significant number of the UK''s research information assets. But our core expertise is building applications that enable a wide range of users to make the most of this rich resource from students and researchers working with census data to investigate social inequalities, to scientists using satellite imagery to survey and protect our environment. We have a longstanding relationship with JISC, developing services that support teaching, learning and research and strong connections with research councils, especially the Economic and Social Research Council (ESRC). We also have partnerships with commercial groups, universities and colleges, government agencies, and national libraries and archives. * An organization of experts: We''re experts in technological development, information management, user support, training, project management, and applied research. * What we do: We maintain and support quality services, develop applications and software, provide data hosting and storage, and share our learning. * What we stand for: Four main principles guide our activities: commitment to our users, technological experimentation and innovation, communication within our community, and investment in staff. data center, teaching, learning, research has parent organization: University of Manchester; Manchester; United Kingdom
is parent organization of: Europe PubMed Central
JISC ;
ESRC
nlx_149473 SCR_006529 2026-09-12 01:00:56 2
ASL data processing tool box
 
Resource Report
Resource Website
1+ mentions
ASL data processing tool box (RRID:SCR_005997) data processing software, software application, software resource, software toolkit Tool box for arterial spin labeled perfusion MRI data processing. It is based on SPM and Matlab. More detailed documentation can be found in asl_perf_subtract.m, the main function for calculating CBF value. It supports 3D or 4D Analyze or Nifiti format and PASL, CASL, and PCASL data. It contains the code for calculating CBF and a set of SPM batch scripts for preprocessing and statistical analysis. quantification, statistical operation, spm, arterial spin label, perfusion, mri, matlab, magnetic resonance is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC)
is related to: SPM
is related to: ASL spm8
has parent organization: University of Pennsylvania Perelman School of Medicine; Pennsylvania; USA
GNU General Public License nlx_151371 SCR_005997 2026-09-12 01:00:56 3
Wistar Institute Collection at Coriell
 
Resource Report
Resource Website
Wistar Institute Collection at Coriell (RRID:SCR_004660) Wistar Collection biomaterial supply resource, cell repository, material resource Collection of cell lines developed by Wistar scientists that includes a group of hybridomas that produce monoclonal antibodies that are useful in influenza research and vaccine development, melanoma cell lines derived from patients with diseases ranging from mild dysplasia to advanced metastatic cancer and a range of human endothelial cell lines. hybridoma, monoclonal antibody, antibody, cell line, melanoma cell line, endothelial cell line, smooth muscle cell line, disease, cancer, dysplasia, metastatic cancer is listed by: One Mind Biospecimen Bank Listing
has parent organization: Coriell Cell Repositories
has parent organization: Wistar Institute
Disease, Cancer, Dysplasia, ( Diseases ranging from mild dysplasia to advanced metastatic cancer ) Non-commercial, For research conducted by universities, Government agencies and academic research centers, Commercial with license nlx_143856 SCR_004660 2026-09-12 01:00:55 0
NIMH Stem Cell Center
 
Resource Report
Resource Website
10+ mentions
NIMH Stem Cell Center (RRID:SCR_006682) NIMH Stem Cell Center biomaterial supply resource, cell repository, material resource Induced Pluripotent Stem Cell (iPSC) and Source Cells available for distribution for postnatal-to-adult human control and patient-derived cells and their reprogrammed derivatives in support of stem cell research relevant to mental disorders. This includes but is not limited to anxiety disorders, attention deficit hyperactivity disorder, autism spectrum disorders, bipolar disorder, borderline personality disorder, depression, eating disorders, obsessive-compulsive disorder, panic disorder, post-traumatic stress disorder, and schizophrenia. The capabilities of the repository range from derivation and banking of primary source cells from postnatal through adult human subject tissue to more comprehensive banking and validation of induced pluripotent stem cells (iPSCs) or similar reprogrammed / de-differentiated cells. Please send a message with the Contact page if you wish to contribute source cells or iPSC. stem cell, cell, induced pluripotent stem cell, mental disease, anxiety disorder, attention deficit-hyperactivity disorder, autism spectrum disorder, bipolar disorder, borderline personality disorder, depressive disorder, eating disorder, obsessive-compulsive disorder, panic disorder, post-traumatic stress disorder, depression, schizophrenia, adult, postnatal, adolescent, normal is listed by: One Mind Biospecimen Bank Listing
is related to: NIMH Repository and Genomics Resources
has parent organization: Rutgers Cell and DNA Repository
Mental disease, Anxiety Disorder, Attention deficit-hyperactivity disorder, Autism spectrum disorder, Bipolar Disorder, Borderline personality disorder, Depressive Disorder, Eating disorder, Obsessive-Compulsive Disorder, Panic Disorder, Post-Traumatic Stress Disorder, Schizophrenia, Normal NIMH Registration required nlx_143795 SCR_006682 2026-09-12 01:00:57 16
Australian Antarctic Data Centre
 
Resource Report
Resource Website
10+ mentions
Australian Antarctic Data Centre (RRID:SCR_006320) AADC data or information resource, organization portal, portal Centre is committed to free and open exchange of scientific data and is working collaboratively with international centres, networks and scientists to build sustainable polar data commons. Delivers professional data management and analysis services to Antarctic scientists and environmental managers. Supports logistical operations of Australian Antarctic Program. Data held in AADC data stores are qualified with metadata and discoverable through Catalogue of Australian Antarctic and Sub-antarctic Metadata (CAASM http://data.aad.gov.au/aadc/metadata) or through customized applications accessible via the website. All data is archived in AADC to permit its re-use. AADC has capability to create DOIs for datasets. Australian Antarctic Program, exchange of scientific data, polar data commons, Catalogue of Australian Antarctic and Sub-antarctic Metadata, DOIs for datasets is listed by: DataCite
is listed by: re3data.org
is related to: GBIF - Global Biodiversity Information Facility
nlx_152019 SCR_006320 Australian Antarctic Data Center 2026-09-12 01:00:56 13
NCBI Resource List
 
Resource Report
Resource Website
NCBI Resource List (RRID:SCR_005628) NCBI Resources data or information resource, organization portal, portal The National Center for Biotechnology Information''s listing of resources. Sort by alphabetical character, Databases, Downloads, Submissions, Tools and How-To; or by Topic: Chemicals & Bioassays; Data & Software; DNA & RNA; Domains & Structures; Genes & Expression; Genetics & Medicine; Genomes & Maps; Homology; Literature; Proteins; Sequence Analysis; Taxonomy; Training & Tutorials; Variation. database, download, submission, tool, chemical, bioassay, data, software, dna, rna, domain, structure, gene, expression, genetics, medicine, genomes, map, homology, literature, protein, sequence analysis, taxonomy, training, tutorial, variation, gold standard has parent organization: NCBI NLM nlx_146242 SCR_005628 NCBI Resource Guide, NCBI Resource List (A-Z) 2026-09-12 01:00:56 0
Neurotechnology Industry Organization
 
Resource Report
Resource Website
Neurotechnology Industry Organization (RRID:SCR_006556) data or information resource, organization portal, portal The Neurotechnology Industry Organization (NIO) is a non-profit trade association that represents companies involved in neuroscience (neuropharmaceuticals, cell-based therapeutics, neurodevices and neurodiagnostics), academic neuroscience research centers, and brain-illness advocacy groups across the United States and throughout the world. NIO was formed to provide a unified voice for the commerical neuroscience community. NIO advocates for its member organizations on a range of issues related to neurotechnology research and business development including favorable changes in the tax code, intellectual property issues, neuroethics, public policy, reimbursement and patient advocacy. Thank you for taking the time to read this brief introduction to the Neurotechnology Industry Organization (NIO), the recently formed trade association representing companies involved in neuroscience (drugs, devices and diagnostics), brain research centers, patient advocacy groups, and research foundations worldwide. NIO was founded in August 2006 and has attracted over 80 member organizations. NIO''s mission is to accelerate treatments and cures for brain and nervous system illnesses by: * Advocating neurotech''s position to government and regulatory officials * Promoting the industry''s progress and contributions to quality of life * Providing industry development services for our members NIO is spearheading several innovative programs that will benefit your company including: National Neurotechnology Initiative - a new $200M/year Federal initiative aimed at accelerating translational neuroscience innovation and improving the effectiveness of the FDA review process for neuroscience drugs, devices and diagnostics NIO/FDA private-public working group - an initiative to work collaboratively with the FDA to improve the efficiency of the evaluation process for neuroscience products and to increase communication and clarity during the regulatory process Partnering, investment and policy events - networking events with other members of the global commercial neuroscience community at events such as the annual public policy tour in March in Washington D.C. and the Neurotech investing and partnering conference in Spring National Visibility - NIO actively outreaches to global media outlets to encourage coverage of Neurotech that will foster great investor, policymaker and consumer interest. As a member of NIO you will enjoy the following benefits: * Influence in the industry''s overall development agenda * Access to key opinion leaders in Congress, regulatory agencies, media * Participation in FDA and CMS working groups, stakeholder meetings * Expanded networking at neurotech investing and partnering events throughout the year * Participation in neuroscience education awareness initiatives, public awareness campaigns * Industry leadership through participation in driving innovative legislation, new projects NIO''s programs increase awareness of commercial neuroscience products, reduce barriers to innovation, support industry growth and will benefit your company and industry. I hope that you will consider joining NIO in support of our mission to give the brain a voice.. nif-0000-00491 SCR_006556 NIO 2026-09-12 01:00:56 0
Cellpack
 
Resource Report
Resource Website
1+ mentions
Cellpack (RRID:SCR_006831) cellPack data processing software, software application, software resource A specialized version of autoPack designed to pack biological components together. The current version is optimized to pack molecules into cells with biologically relevant interactions to populate massive cell models with atomic or near-atomic details. Components of the algorithm pack transmembrane proteins and lipids into bilayers, globular molecules into compartments defined by the bilayers (or as exteriors), and fibrous components like microtubules, actin, and DNA. 3d packing software, pack, molecule, cell is related to: Autopack
has parent organization: Autopack
QB3 at UCSF Fellowship ;
NSF 07576;
NCRR P41 RR08605
GNU Lesser General Public License nlx_151792 https://sites.google.com/site/autofill21/, http://code.google.com/p/autofill/ SCR_006831 2026-09-12 01:00:57 9
One Mind for Research
 
Resource Report
Resource Website
1+ mentions
One Mind for Research (RRID:SCR_006711) One Mind data or information resource, organization portal, portal One Mind for Research''s plan to work smarter and share resources through public and private partnerships has the power to help us make more progress on every brain disorder from schizophrenia to traumatic brain injury. In the process, we will increase the investment in research by $1.5 billion each year for the next 10 years. And achieve a minimum 10% reduction in the cost of brain disease per year. This is how neurological cures that once seemed beyond our reach begin to take shape. When we''re all of one mind working toward the same goal, anything can be accomplished. $8 billion a year is spent on brain research, but the minimum cost of brain disease is one hundred times that. Yet amazingly, unlocking the mysteries of the human brain has less to do with resources than it does their coordination. Because though there is science, it exists in many different silos. There has never been a single organization that brings together the science, technology, financial resources and knowledge required to create an unprecedented understanding of brain disease. Until now. The One Mind for Research Forum began on May 23, 2011 and over the course of 2 days, the best and brightest from around the world gathered as part of a national collaboration of research universities, scientists, and the National Institutes of Health (NIH) Directors as they imagined an ambitious 10-year plan for neuroscience research. One Mind believes that new treatments and cures for neurological and psychiatric diseases that afflict one in three Americans, from children with autism to senior citizens with Alzheimer''s disease, are all within reach. resource sharing has parent organization: IMHRO: International Mental Health Research Organization
is parent organization of: One Mind Biospecimen Bank Listing
nlx_143561 SCR_006711 2026-09-12 01:00:57 2
SOAPaligner/soap2
 
Resource Report
Resource Website
100+ mentions
SOAPaligner/soap2 (RRID:SCR_005503) SOAPaligner, SOAP2 data processing software, software application, software resource THIS RESOURCE IS NO LONGER IN SERVICE. Documented on April 12,2024. Updated version of SOAP software for short oligonucleotide alignment that features in super fast and accurate alignment for huge amounts of short reads generated by Illumina/Solexa Genome Analyzer., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025. next generation sequencing, alignment, short read, oligonucleotide, single-read, pair-end, resequencing, bio.tools is listed by: OMICtools
is listed by: Debian
is listed by: bio.tools
has parent organization: SOAP
PMID:19497933
DOI:10.1093/bioinformatics/btn025
THIS RESOURCE IS NO LONGER IN SERVICE biotools:soap2 https://bio.tools/soap2, https://sources.debian.org/src/soapaligner/ SCR_005503 2026-09-12 01:00:56 325
Human Epigenome Atlas
 
Resource Report
Resource Website
1+ mentions
Human Epigenome Atlas (RRID:SCR_006153) Human Epigenome Atlas atlas, data or information resource, reference atlas Collection of human reference epigenomes and results of their integrative and comparative analyses. Successive releases of the Atlas will provide progressively more detailed insights into locus-specific epigenomic states, including histone marks and DNA methylation marks across specific tissues and cell types, developmental stages, physiological conditions, genotypes, and disease states. The Human Epigenome Atlas is produced by the NIH Epigenomics Roadmap Consortium. locus, epigenomic state, histone, dna methylation, tissue, cell, developmental stage, physiological condition, genotype, disease state, exon, epigenome, epigenomics is related to: UCSC Genome Browser
is related to: WashU Epigenome Browser
has parent organization: Roadmap Epigenomics Project
has parent organization: Baylor University; Texas; USA
PMID:20944597 Public; must adhere to the Data Access Policy nlx_151645 http://www.genboree.org/site/ SCR_006153 2026-09-12 01:00:56 7
NeuroDevNet
 
Resource Report
Resource Website
10+ mentions
NeuroDevNet (RRID:SCR_004925) NeuroDevNet data or information resource, organization portal, portal NeuroDevNet, a Canadian Network of Centres of Excellence (NCE), is dedicated to helping children overcome neurodevelopmental disorders. Network investigators seek to understand the causes of neurological deficits, and to transfer this knowledge to health care professionals, policy makers, and communities of interest. NeuroDevNet works with its partners in academia, the community, not-for-profit sector, industry, and government, and across traditional disciplinary boundaries and sectors, to ensure generated knowledge is translated into tangible diagnostic, preventative, therapeutic, social, economic, and health benefits for all. NeuroDevNet supports transformative research, provides training to build a new generation of Canadian researchers, strengthens communities with the right tools and information, and translates research findings into early diagnostic, preventative, and therapeutic strategies for children with neurological disorders to live healthier lives. Currently, the network''s research focuses on autism spectrum disorder, cerebral palsy, and fetal alcohol spectrum disorder. These demonstration projects are supported by NeuroDevNet''s central infrastructure and cores, including Neuroethics, Neuroinformatics, and Knowledge Translation. has parent organization: University of British Columbia; British Columbia; Canada Networks of Centres of Excellence of Canada nlx_88813, grid.429756.b https://ror.org/04r0s0t24 SCR_004925 2026-09-12 01:00:55 16

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    5. Using autocomplete specifies which branch of our semantics you with to search and can help refine your search
  5. Collections

    If you are logged into dkNET you can add data records to your collections to create custom spreadsheets across multiple sources of data.

  6. Facets

    Here are the facets that you can filter the data by.

  7. Further Questions

    If you have any further questions please check out our FAQs Page to ask questions and see our tutorials. Click this button to view this tutorial again.