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SciCrunch Registry is a curated repository of scientific resources, with a focus on biomedical resources, including tools, databases, and core facilities - visit SciCrunch to register your resource.
http://www.horizonpress.com/gateway/
Molecular Biology Gateway is the gateway to Web resources for molecular biology, genomics, PCR, protocols, microbiology, and biochemistry. Major categories include: Current Molecular Biology News, Microbiology, Virology, Genomics and Bioinformatics, PCR, Journals, Books, and other Publications, Protocols, Technology, Books, and Recommended Reading.
Proper citation: Molecular Biology Gateway (RRID:SCR_010628) Copy
http://icy.bioimageanalysis.org/
An open community platform for bioimage informatics providing the software resources to visualize, annotate and quantify bioimaging data. To bridge the gap between developers and users, it combines: a) an open-source image analysis software, offering a powerful and flexible environment for developers such as applied mathematicians to write algorithms fast and efficiently; b) a common set of tools to view and manipulate data, and a set of plugins to perform specific quantification or analysis on images; c) a community-based website centralizing all plugins and resources to facilitate their management and maximize their visibility towards users. Workspaces are virtual groups of plugins dedicated to a specific application or image processing domain. By downloading a workspace, ICY automatically installs all corresponding plugins. The workspaces are enabled, but the editing section is not ready yet. If you want to publish a plugin on this website, its code has to be GPL. Source code is available and provided in each application download.
Proper citation: icy (RRID:SCR_010587) Copy
Access service resource which connects labs needing and offering experimental services. Users can search for academic and government labs and experimental services, request and compare service quotes, and directly communicate with labs to arrange orders.
Proper citation: ScienceExchange (RRID:SCR_010620) Copy
https://scicrunch.org/scicrunch/data/source/nlx_154697-18/search?q=*&l=
A virtual database cataloging numerous data set resources, including: BrainMaps.org, Cell Centered Database, Clinical Trials Network (CTN) Data Share, ClinicalTrials.gov, CRCNS, Gene Expression Omnibus, ArrayExpress, MPD - Mouse Phenome Database, BioSharing, Gene Weaver, XNAT Central, 1000 Functional Connectomes Project, Health.Data.gov, SciCrunch Registry, NIF Registry Automated Crawl Data, NeuroVault, OpenfMRI, Physiobank, RanchoBiosciences, YPED, Data.gov Science, and Research Data Catalog.
Proper citation: Integrated Datasets (RRID:SCR_010503) Copy
Project aims to promote data sharing, archiving, and reuse among researchers who study human development. Focuses on creating tools for scientists to store, manage, preserve, analyze and share video and related data.
Proper citation: Databrary (RRID:SCR_010471) Copy
The Museum of Vertebrate Zoology (MVZ) at the University of California, Berkeley, is a center for research and education in the biology of amphibians, reptiles, birds, and mammals. Founded in 1908, the Museum''s mission is to document and increase understanding of the diversity of terrestrial vertebrates, with particular emphasis on western North America. An MVZ Video Gallery is also available. The superb collections are at the heart of the MVZ program, where methods of field biology are combined with modern laboratory techniques and analytical methods in a comprehensive, synthetic approach. Our goals are to remain at the forefront of international research on evolutionary biology from the perspectives of systematics, ecology, behavior, functional and developmental morphology, population biology, and evolutionary genomics, and to lead the way in developing and using major natural history collections for research, education, and solving problems in biodiversity conservation. Because the MVZ was founded upon a philosophy that organisms should be studied in relationship to their natural environments, its collections are supplemented by extensive ancillary information (e.g., field notes, habitat photographs, tape-recorded vocalizations) that is connected to specimens and/or tissues and enhances their value to researchers. This concept was pioneered at the MVZ and continues to be the primary focus of current research efforts. To this end, there are strong research links between the Museum and the 2,000 acre MVZ/UC field station at Hastings Natural History Reservation. In addition, the MVZ is actively engaged in developing concepts and tools for Biodiversity Informatics through collaborations across the Berkeley Natural History Museums and international consortia.
Proper citation: Museum of Vertebrate Zoology (RRID:SCR_010595) Copy
http://www.clinfowiki.org/wiki/index.php/Main_Page
A Wiki devoted to topics in clinical informatics. Contents: 1 Health Information Technology Regional Extension Centers 2 Free and Open Source Software (FOSS) licensing in medicine 3 Electronic Healthcare Communication 4 Electronic Medical Record (EMR) Systems 5 Computer-based Provider Order Entry -- CPOE 6 Clinical Decision Support -- CDS 7 Books on Topics in Clinical Informatics 8 Medical Devices, Computerized -- SmartDevices 9 Personal Health Records -- PHRs 10 Personal Health Applications -- PHAs 11 Informatics Students'' Contributions 12 Blueprint for a Comprehensive HIT System 13 Biobanking -- a.k.a. Biorepositories or Tissue Banks 14 Organizational issues 15 Regional Health Information Organizations -- RHIOs 16 Evidence-Based Medicine -- EBM 17 Evaluation Methods in Informatics 18 Unintended Consequences of Health Information Technology 19 Quality & Quality Informatics 20 Public Health Informatics 21 U.S. Federal Health Information Technology Initiatives 22 The E-Patient-Provider Relationship 23 Interface Terminology 24 New CIS-related Technologies 25 Workflow 26 Terminology and Coding 27 Interface/Usability Testing 28 International views 29 Blogposium, April 2006 30 Departments / Schools of Biomedical or Medical Informatics 31 Endowed Professorships and Chairs in Health / Medical / Nursing / Biomedical Informatics 32 Leading Health Informatics and Medical Informatics Journals o 32.1 Ranking of ISI/SCI listed e-Health and Medical Informatics Journals o 32.2 Not listed / ranked in ISI/SCI 33 External Links 34 External Medical Reference Links 35 External Informatics Organizations Links
Proper citation: Clinical Informatics Wiki (RRID:SCR_010518) Copy
Software package for sequence alignment, assembly and analysis. Integrated and extendable desktop software platform for organization and analysis of sequence data. Bioinformatics software platform packed with molecular biology and sequence analysis tools.
Proper citation: Geneious (RRID:SCR_010519) Copy
The web portal provides comprehensive local database of human genome variants with a user-friendly web page that provides a one-stop annotating and funtonal prediction service which is both convenient and up-to-date. A query can be accepted as either a dbSNP Id or a chromosomal location and our system will instantly provide all the annotation information in an interactive LD panel. The system can also simultaneously prioritize this variant based on additive effect mode by corresponding annotation information and evaluate the variant effect that is then displayed in a prioritization tree. Furthermore, cohort sequencing continuously produces lots of un-annotated variants such as rare variants or de novo variants, and our system can even fit this data by accepting genomic coordinates (hg19) to offer maximal annotations. Main Functions Over 40 up-to-date annotation items for human single nucleotide variations; Functional prediction for different types of variants; Dynamic LD panel for both HapMap and 1000 Genomes Project populations; Prioritization score and tree viewer based on variant functional model.
Proper citation: SNVrap (RRID:SCR_010512) Copy
https://medschool.ucsd.edu/Pages/default.aspx
Graduate medical school of University of California, San Diego. It was the third medical school in the University of California system, after those established at UCSF and UCLA, and is the only medical school in the San Diego metropolitan area.
Proper citation: University of California San Diego School of Medicine; California; USA (RRID:SCR_010634) Copy
A research-based biopharmaceutical company that develops advanced therapies to address global health problems.
Proper citation: AbbVie (RRID:SCR_010484) Copy
http://www.mpimf-heidelberg.mpg.de/
Proper citation: Max Planck Institute for Medical Research; Heidelberg; Germany (RRID:SCR_011378) Copy
Proper citation: Max Planck Institute for Molecular Genetics; Berlin; Germany (RRID:SCR_011379) Copy
http://www.mpi-dortmund.mpg.de/2285/en
Max Planck Institute of Molecular Physiology is located in Dortmund, next to the Dortmund University of Technology. It is one of 80 institutes in the Max Planck Society.
Proper citation: Max Planck Institute of Molecular Physiology; Dortmund; Germany (RRID:SCR_011382) Copy
Nonprofit academic medical center focused on integrated clinical practice, education, and research with three major campuses: Rochester, Minnesota; Jacksonville, Florida; and Phoenix/Scottsdale, Arizona. Practice specializes in treating difficult cases through tertiary care and destination medicine.
Proper citation: Mayo Clinic (RRID:SCR_011383) Copy
http://www.mayoclinic.org/patient-visitor-guide/minnesota
Nonprofit academic medical center based in Rochester, Minnesota, focused on integrated clinical practice, education, and research. Highly specialized in cardiovascular diseases and surgery. Practice specializes in treating difficult cases through tertiary care and destination medicine.
Proper citation: Mayo Clinic Minnesota; Minnesota; USA (RRID:SCR_011386) Copy
Institute of Biology and Chemistry of Proteins of Lyon University.
Proper citation: Institute of Biology and Chemistry of Proteins; Lyon; France (RRID:SCR_011309) Copy
For over a decade, the Institute for Scientific and Technical Information (INstitut de l''Information Scientifique et Technique - Inist) of the French National Center for Scientific Research (Cnrs) has been designing and developing services to facilitate access to and valorization of scientific information produced by international basic and applied research communities. The INIST has skilled expertise in the field of biocuration of digital resources and bibliographic databases. With the advent of the Internet, while continuing with its traditional document delivery and bibliographic activities, INIST''s role has evolved towards providing public sector researchers with the direct and permanent access to the scientific information they need. Nowadays, INIST is actively involved in activities concerning electronic resources negociations and electronic resource sharing, electronic publishing, electronic archiving, science monitoring, and information analysis and processing.
Proper citation: Institute for Scientific and Technical Information (RRID:SCR_011303) Copy
http://www.systemsbiology.org/
The Institute for Systems Biology (ISB) was established to address the greatest challenge of 21st-century science understanding biological complexity. Since its founding in 2000, ISB has been a pioneering source of new knowledge, innovative technologies and computational tools, and creative ways of understanding, conducting and communicating science. An independent, non-profit organization poised between academia and industry, ISB is deeply committed to discovering knowledge and translating its benefits to society. ISB commercializes its discoveries; advances science education; helps society better understand the impacts of science and technology; and creates exciting new organizations that facilitate these transfers. ISB is catalyzing fundamental paradigm changes in how the life sciences and medicine are practiced globally. Researchers at ISB are generating results that can be applied to some of society''s most perplexing problems in medicine, global health and the environment. They are creating productive strategic partnerships with universities, companies and governments around the world, which are essential to attacking these challenges in a trans-disciplinary manner.
Proper citation: Institute for Systems Biology; Washington; USA (RRID:SCR_011305) Copy
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