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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Lab Streaming Layer Resource Report Resource Website 50+ mentions |
Lab Streaming Layer (RRID:SCR_017631) | LSL | software application, software resource | System for unified collection of measurement time series in research experiments that handles networking, time synchronization, near real time access as well as optionally centralized collection, viewing and disk recording of data. System for synchronizing streaming data for live analysis or recording. | Synchronizing, streaming, data, live, analysis, recording, collection, time, series, EEG | has parent organization: University of California at San Diego; California; USA | Army Research Laboratory ; NINDS R01 NS047293 |
Free, Freely available | SCR_017631 | Lab Streaming Layer | 2026-09-12 01:02:55 | 86 | |||||||
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Howard University Center for Computational Biology and Bioinformatics Core Facility Resource Report Resource Website |
Howard University Center for Computational Biology and Bioinformatics Core Facility (RRID:SCR_009864) | Howard CCBB, CCBB | access service resource, core facility, service resource | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on October 27,2023. Core for bioinformatics consultation and software access. Laboratory of Molecular Computations and Bioinformatics (LMCB) is a resource facility dedicated to the support of computational biomedical research at Howard University. Provides molecular modeling, molecular dynamics, bioinformatics, and computational quantum chemistry capabilities and support to a variety of research projects at Howard University. | data, analysis, bioinformatics, software, access, consultation, molecular, computation, biomedical, quantum, chemistry |
is listed by: Eagle I has parent organization: Howard University; Washington D.C. |
THIS RESOURCE IS NO LONGER IN SERVICE | nlx_156335 | https://rcmi.howard.edu/ccbb-3/ | http://www.howard.edu/medicine/rcmi/LMCB/default.htm | SCR_009864 | , LMCB, Laboratory of Molecular Computations and Bioinformatics, Howard, CCBB | 2026-09-12 01:03:23 | 0 | |||||
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Harvard Bioinformatics Core at Joslin Diabetes Center Resource Report Resource Website |
Harvard Bioinformatics Core at Joslin Diabetes Center (RRID:SCR_009827) | access service resource, core facility, service resource | Core for data driven projects related to basic, clinical and translational research, with a particular emphasis on diabetes. Aims to ensure that researchers take advantage of the most modern and robust methods available in the field of Bioinformatics and Biostatistics. | computational, core, data, analysis, diabetes |
is listed by: Eagle I is related to: Joslin Diabetes Center has parent organization: Harvard University; Cambridge; United States |
Diabetes | nlx_156298 | http://www.joslin.org/bioinformatics.html | SCR_009827 | The Bioinformatics and Biostatistics Core at Joslin Diabetes Center, Bioinformatics and Biostatistics Core at Joslin Diabetes Center | 2026-09-12 01:03:22 | 0 | |||||||
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Harvard School of Public Health Environmental Statistics and Bioinformatics Core Facility Resource Report Resource Website 10+ mentions |
Harvard School of Public Health Environmental Statistics and Bioinformatics Core Facility (RRID:SCR_009822) | access service resource, core facility, service resource | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on October 27,2023. Core provides intellectual guidance for quantitative aspects of the design and analysis of center studies and expertise in biostatistical methods, environmental risk assessment, Geographic Information System (GIS) , spatial statistics, molecular biology, bioinformatics and statistical genetics. Core runs a regular seminar series and often sponsors short courses on specialized topics of interest to the community. | core, design, analysis, guidance, biostatistical, methods, GIS, spatial, statistics, molecular, biology, genetics, seminar, course, sponsor |
is listed by: Eagle I is listed by: ScienceExchange has parent organization: Harvard T.H. Chan School of Public Health |
THIS RESOURCE IS NO LONGER IN SERVICE | nlx_156290 | https://apps.sph.harvard.edu/publisher/upload/research/niehs/facility-cores/environmental-statistics-and-bioinformatics-core/index.html | SCR_009822 | Bioinformatics Core, HSPH, Environmental Statistics, Harvard School of Public Health | 2026-09-12 01:03:22 | 31 | |||||||
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Tuskegee University Computational Biology and Bioinformatics - Biomedical Information Management Services Resource Report Resource Website |
Tuskegee University Computational Biology and Bioinformatics - Biomedical Information Management Services (RRID:SCR_010065) | TU BIMS | access service resource, core facility, service resource | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on October 30,2023. Core provides services and training in computational biology, bioinformatics, experimental design and statistical analysis to the RCMI researchers and the biomedical research community at Tuskegee University. | service, training, computational, biology, bioinformatics, experimental, design, statistical, analysis |
is listed by: Eagle I has parent organization: Tuskegee University; Alabama; USA |
THIS RESOURCE IS NO LONGER IN SERVICE | nlx_156535 | SCR_010065 | TU, Computational Biology, BIMS, Tuskegee University, Information Management Services, Bioinformatics, Biomedical | 2026-09-12 01:03:27 | 0 | |||||||
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Amino_acid_composition_and_hydrophobicity_analysis Resource Report Resource Website |
Amino_acid_composition_and_hydrophobicity_analysis (RRID:SCR_026281) | software resource, software toolkit, source code | Software package to analyze amino acid content and hydrophobicity profile of given set of protein sequences in fasta file. Used for analysis of amino acid composition and hydrophobicity of test sequences from fasta files. | Analysis, amino acid composition, hydrophobicity, test sequences, fasta files, | Free, Available for download, Freely available, | SCR_026281 | 2026-09-12 01:05:01 | 0 | |||||||||||
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Thermo Fisher: Ion Torrent Genexus Integrated Sequencer Resource Report Resource Website 1+ mentions |
Thermo Fisher: Ion Torrent Genexus Integrated Sequencer (RRID:SCR_026449) | instrument resource | Ion Torrent Genexus Integrated Sequencer is part of the Ion Torrent Genexus System. Instrument that can automate library construction, templating, and sequencing in single-instrument run. | sequencer, automate NGS library preparation, sequencing, analysis | https://raw.githubusercontent.com/SciCrunch/RRID-Instruments/main/PDF/SCR_026449.pdf | Model_Number_Genexus | SCR_026449 | Genexus Integrated Sequencer | 2026-09-12 01:05:04 | 1 | |||||||||
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FEI: Helios Nanolab 600i DualBeam Resource Report Resource Website |
FEI: Helios Nanolab 600i DualBeam (RRID:SCR_027033) | instrument resource | Scanning Electron Microscope advanced DualBeam for ultra-high resolution imaging, analysis and fabrication at the nanoscale. Helios NanoLab 600i builds on the success of FEI’s winning DualBeam series offering advances in ion beam, electron beam, patterning and range of features to make milling, imaging, analysis and sample preparation down to nanoscale. | Scanning Electron Microscope, imaging, analysis, nanoscale, microscope, electron microscope, | https://raw.githubusercontent.com/SciCrunch/RRID-Instruments/refs/heads/main/PDF/SCR_027033.pdf | Model_Number_Helios_NanoLab_600i | SCR_027033 | FEI Helios NanoLab 600i DuaBeam, , FEI Helios NanoLab 600i DuaBeam Scanning Electron Microscope, Helios NanoLab 600i | 2026-09-12 01:05:17 | 0 | |||||||||
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University of Florida ICBR Gene Expression and Genotyping Core Facility Resource Report Resource Website 50+ mentions |
University of Florida ICBR Gene Expression and Genotyping Core Facility (RRID:SCR_019145) | access service resource, core facility, service resource | Core provides services and consultation on Single Cell RNA-Seq, RNA-Seq, 16s metagenomics and Affymetrix gene expression arrays. High-throughput RNA-seq libraries, 16s libraries and sequencing capture libraries can be done by using Agilent Bravo robot. QuantiGene RNA Assays measure up to 80 gene targets directly with degraded and cross-linked RNA in FFPE tissues and blood, with no RNA purification required.BioRad QX200 AutoDG Droplet Digital PCR System provides absolute quantification of target DNA or RNA molecules with greater precision and sensitivity than qPCR, sensitivity off ddPCR System can facilitate expanded analysis of single cells. Genotyping services include fragment analysis using AB3730, 96 capillary technology, development of microsatellite libraries using Illumina sequence data, and genotyping using mouse tails or ear punches. | USEDit, gene expression, genotyping, single cell RNAseq, PCR, qPCR, analysis, ABRF |
is listed by: ABRF CoreMarketplace has parent organization: University of Florida; Florida; USA |
ABRF_647 | https://coremarketplace.org/?FacilityID=647 | SCR_019145 | University of Florida ICBR Gene Expression and Genotyping, UF ICBR Gene Expression & Genotyping | 2026-09-12 01:04:08 | 68 | ||||||||
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Louisiana State University Pennington Biomedical Research Center Genomics Core Facility Resource Report Resource Website |
Louisiana State University Pennington Biomedical Research Center Genomics Core Facility (RRID:SCR_018675) | GCF | access service resource, core facility, service resource | Provides services which include Sanger and next-generation DNA sequencing,DNA fragment analysis,qualitative and quantitative analysis of DNA, protein, and RNA samples, quantitative PCR, microarray RNA labeling, hybridization, and scanning robotics,bioinformatics.Individual and small group training and consultation services are offered for sequence analysis, real-time PCR, next-generation sequencing and microarray analysis. | USEDit, Sanger sequencing, next generation DNA sequencing, DNA fragment analysis, quality, quantity, analysis, DNA, protein, RAN, qPCR, microarray RNA labeling, hybridization, scanning robotics, training, ABRF | is listed by: ABRF CoreMarketplace | NIDDK 2P30DK072476; NIGMS 1P30GM118430 |
Open | ABRF_434 | https://coremarketplace.org/?FacilityID=434 | SCR_018675 | Pennington Genomics Core, Pennington Biomedical Research Center Genomics Core | 2026-09-12 01:04:07 | 0 | |||||
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University of Massachusetts Medical School Metabolic Disease Research Center Core Facility Resource Report Resource Website 1+ mentions |
University of Massachusetts Medical School Metabolic Disease Research Center Core Facility (RRID:SCR_018672) | MMPC, UMass MMPC, MDRC | access service resource, core facility, service resource | UMass Metabolic Disease Research Center (MDRC), formerly the National Mouse Metabolic Phenotyping Center, is a core facility that performs standardized experiments using state-of-the-art equipment for the purpose of investigating transgenic mouse models of diabetes, obesity, and metabolic liver disease. Provides metabolic and functional characterization of mouse models of human diseases that are developed by academic and industry researchers in joint efforts to understand metabolic diseases and to identify new therapies. | UMass Chan Medical School, mouse model, human disease, diabetes, obesity, diabetic complication, phenotyping, metabolism, analysis, islet, cardiovascular, microbiome, humanized mouse cell transplantation, assessment, ABRF |
is listed by: ABRF CoreMarketplace has parent organization: University of Massachusetts Medical School; Massachusetts; USA |
NIDDK U2C DK093000 | Open | SCR_015366, ABRF_390 | https://coremarketplace.org/?FacilityID=390 | SCR_018672 | Massachusetts University Medical School Mouse Phenotyping Center Core Facility, UMass Medical School Metabolic Disease Research Center, National Mouse Metabolic Phenotyping Center, University of Massachusetts Medical School Mouse Phenotyping Center Core Facility, Massachusetts University Medical School National Mouse Metabolic Phenotyping Center | 2026-09-12 01:04:07 | 1 | |||||
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South Carolina Medical University Mass Spectrometry Core Facility Resource Report Resource Website 1+ mentions |
South Carolina Medical University Mass Spectrometry Core Facility (RRID:SCR_017959) | access service resource, core facility, service resource | Core provides expertise, services, education, and instrumentation to enhance biomedical research through LC-MS/MS-based proteomics. Services are offered for protein identification; characterization of post-translational modifications; and quantitative proteomics to identify differentially expressed/degraded proteins, regulated sites of post-translational modification, protein-protein interactions, and protein targets of drugs identified in phenotypic screens. Analyses include sample preparation, LC-MS/MS, database searching, generation of reports, and assistance with data interpretation. Faculty and staff assist with experimental design and development/optimization of customized methodology for analysis of post-translationally modified peptides (e.g. phosphorylation and O-GlcNAc modification, N- and O-linked glycosylation, Cys modifications including S-glutathionylation, and glycation of Lys and Arg). Quantitative approaches including metabolic labeling (SILAC), isobaric tagging (iTRAQ/TMT), and label free proteomics (LFQ) are performed on Orbitrap Elite or Orbitrap Fusion Lumos Mass Spectrometers. Developes methodology to identify alterations in post-translational modifications that impact signal transduction, transcription, translation, and response to therapeutics with goal of enabling investigators to discover molecular mechanisms underlying disease progression and therapeutic response. | Mass, spectrometry, expertise, service, education, instrumentation, proteomics, protein, identification, characterization, post translational, modification, target, drug, identification, phenotypic, screen, analysis, disease, service, core, ABRF | is listed by: ABRF CoreMarketplace | NIGMS P20 GM103542; NIH Office of the Director S10 OD010731 |
ABRF_985 | SCR_017959 | MUSC Mass Spectrometry Facility | 2026-09-12 01:04:06 | 1 | ||||||||
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Virginia Tech Mass Spectrometry Incubator Core Facility Resource Report Resource Website |
Virginia Tech Mass Spectrometry Incubator Core Facility (RRID:SCR_017956) | VT-MSI | access service resource, core facility, service resource | Facility supports Virginia Tech's research infrastructure as mass spectrometry analysis and education center. Provides training in sample preparation, instrument operation and data analysis, with strong emphasis on metadata and analytical requirements for publication of metabolomic and proteomic results. | Mass, spectrometry, incubator, education, training, sample, preparation, instrument, operation, data, analysis, metadata, metabolomics, proteomics, service, core, ABRF, USEDit |
is listed by: ABRF CoreMarketplace is related to: USEDit |
Restricted | ABRF_990 | SCR_017956 | Virginia Tech Mass Spectrometry Incubator | 2026-09-12 01:04:06 | 0 | |||||||
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Johns Hopkins University School of Medicine Genetic Resources Core Facility Resource Report Resource Website 50+ mentions |
Johns Hopkins University School of Medicine Genetic Resources Core Facility (RRID:SCR_018669) | GRCF | access service resource, core facility, service resource | Established to produce immortalized cell lines from human blood (EBV transformations). Offers genomics applications for single cells, including RNA-seq, gene expression profiling by qPCR and DNA amplification for whole-genome or targeted (exome or PCR-based analysis) through 10x Genomics Chromium platform (similar to Drop Seq). Offers custom genotyping to analyze short tandem repeats, variable number tandem repeats and single nucleotide polymorphisms. | USEDit, immortalized cell line production, human blood, RNAseq, gene expression profiling, qPCR, DNA amplification, exome, genome, PCR, analysis, ABRF |
is listed by: ABRF CoreMarketplace is related to: USEDit has parent organization: Johns Hopkins University; Maryland; USA |
ABRF_344 | https://grcf.jhmi.edu/grcf-services/ | https://grcf.jhmi.edu/biorepository-cell-center/ | SCR_018669 | GRCF Cell Center, Genetic Resources Core Facility, JHU-NAT, GRCF Biorepository and Cell Center, GRCF DNA Services, Genetic Resources Core Facility (GRCF) BioRepository and Cell Center, JHU Nucleic Acid Technologies, JHU BioBank | 2026-09-12 01:04:07 | 60 | ||||||
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University of Alberta Faculty of Medicine and Dentistry Cell Imaging Centre Core Facility Resource Report Resource Website 10+ mentions |
University of Alberta Faculty of Medicine and Dentistry Cell Imaging Centre Core Facility (RRID:SCR_019200) | FoMD | access service resource, core facility, service resource | Cell Imaging Centre provides services and training for imaging and analysis of live or fixed cells and tissues.Image acquisition equipment and expert consultation for experimental design related to light and electron microscopy are offered, with full technical assistance, from sample processing through image analysis. | USEDit, imaging, analysis, live cells, fixed cells, live tissues, fixed tissues, ABRF, ABRF |
is listed by: ABRF CoreMarketplace has parent organization: University of Alberta; Alberta; Canada |
Canada Foundation for Innovation ; Faculty of Medicine and Dentistry |
ABRF_1081 | https://coremarketplace.org/?FacilityID=1081 | https://www.ualberta.ca/medicine/research/corefacilities/cell-imaging-centre/index.html | SCR_019200 | Faculty of Medicine and Dentistry Cell Imaging Centre | 2026-09-12 01:04:09 | 24 | |||||
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AltaiR Resource Report Resource Website 1+ mentions |
AltaiR (RRID:SCR_024752) | data analysis software, data compression software, data processing software, data visualization software, software application, software resource | Software C toolkit for alignment free and spatial temporal analysis of multi-FASTA data. Used for entangling presence of multiple sequences from epidemic and pandemic events. | alignment free, spatial temporal analysis, multi-FASTA data, sequence, analysis, multiple sequences entangling presence, , FASTA format, epidemic and pandemic events, | Genomic Data Infrastructure Fundação para a Ciência e a Tecnologia; CEECINST/00026/2018 Fundação para a Ciência e a Tecnologia; European Commision 101081813 |
Free, Available for download, Freely available | SCR_024752 | 2026-09-12 01:04:30 | 2 | ||||||||||
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PEPATAC Resource Report Resource Website 1+ mentions |
PEPATAC (RRID:SCR_024758) | software resource, software toolkit | Software standardized pipeline for ATAC-seq data analysis with serial alignments. Leverages unique features of ATAC-seq data to optimize for speed and accuracy, and provides several unique analytical approaches. Downstream analysis is simplified by standard definition format, modularity of components, and metadata APIs in R and Python. Restartable, fault-tolerant, and can be run on local hardware, using any cluster resource manager, or in provided Linux containers. We also emphasize the advantage of aligning to the mitochondrial genome serially, which improves alignment and quality control metrics. Includes quality control plots, summary statistics, and variety of data formats. | ATAC-seq analysis pipeline, ATAC-seq data, analysis, serial alignments, | American Society of Hematology ; Howard Hughes Medical Institute ; NHGRI RM1 HG007735; NIGMS R35 GM128636 |
PMID:34859208 | Free, Available for download, Freely available | https://github.com/databio/PEPATAC/releases | SCR_024758 | 2026-09-12 01:04:30 | 2 | ||||||||
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Sanford Burnham Prebys Medical Discovery Institute Medicinal Chemistry Facility Resource Report Resource Website |
Sanford Burnham Prebys Medical Discovery Institute Medicinal Chemistry Facility (RRID:SCR_014872) | instrument supplier, material resource | Core facility that provides general synthetic and medicinal chemistry resources and expertise to the biomedical research community. Services include chemistry consulting for projects, grant applications, synthetic chemistry, medicinal chemistry, and analytical chemistry, as well as access to equipment for synthesis, purification, and analysis. | facility, la jolla, medicinal chemistry, synthesis, analysis, grant application, consultation | Commercially available | SCR_014872 | SBP Medicinal Chemistry Facility, SBP Medical Discovery Institute Medicinal Chemistry Facility | 2026-09-12 01:03:48 | 0 | ||||||||||
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Michigan Center for Diabetes Translational Research Methods and Measurements Core Resource Report Resource Website |
Michigan Center for Diabetes Translational Research Methods and Measurements Core (RRID:SCR_015188) | access service resource, core facility, service resource | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on November 6,2024. Research core that works to assist investigators in designing studies, collecting data, and analyzing data to examine questions related to the causes, prevention, and control of diabetes, its complications, and comorbidities. | methodology, measurement technique, analysis, study design, diabetes research, translational research |
is listed by: NIDDK Information Network (dkNET) has parent organization: University of Michigan Medical School; Michigan; USA has parent organization: Michigan Center for Diabetes Translational Research is organization facet of: Michigan Center for Diabetes Translational Research |
Diabetes | NIDDK P30DK092926 | THIS RESOURCE IS NO LONGER IN SERVICE | SCR_015188 | 2026-09-12 01:03:52 | 0 | ||||||||
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National High Magnetic Field Laboratory Ion Cyclotron Resonance Core Facility Resource Report Resource Website 1+ mentions |
National High Magnetic Field Laboratory Ion Cyclotron Resonance Core Facility (RRID:SCR_017361) | ICR, FT-ICR | access service resource, core facility, service resource | Facility provides service operations for sample analysis that requires ultrahigh resolution and high mass accuracy of Fourier Transform Ion Cyclotron Resonance. Used for research in biomolecular analysis, hydrogen-deuterium exchange and environmental and petrochemical analysis. Four FT-ICR mass spectrometers feature high magnetic fields including the world-record 21 tesla and are compatible with multiple ionization and fragmentation techniques. | FT-ICR, ICR, Ion Cyclotron Resonance, Fourier Transform Ion Cyclotron Resonance, analysis, spectrometer, magnetic, field, tesla, ionization, fragmentation, technique | is related to: Florida State University; Florida; USA | Department of Defense ; Department of Energy ; Florida State ; NIH ; NSF |
Restricted | SCR_017361 | National High Magnetic Field Laboratory Ion Cyclotron Resonance Facility, Ion Cyclotron Resonance Facility, NHMF Laboratory Cyclotron Resonance Facility | 2026-09-12 01:03:59 | 1 |
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The NIDDK Information Network (dkNET) serves the needs of basic and clinical investigators by providing seamless access to large pools of data and research resources relevant to the mission of The National Institute of Diabetes Digestive and Kidney Diseases (NIDDK). dkNET is hosted at University of California San Diego, and is supported by NIH NIDDK grant U24DK097771.
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