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http://www.angelo.edu/

Public university in San Angelo, Texas. It was founded in 1928 as San Angelo College. It gained university status and awarded its first baccalaureate degrees in 1967 and graduate degrees in 1969, the same year it took on its current name.

Proper citation: Angelo State University; Texas; USA (RRID:SCR_011093) Copy   

•   Source: SciCrunch Registry
  

http://www.cs.ubc.ca/~sshah/acgh/

A software for detection of DNA copy number alterations (CNAs) from array comparative genomic hybridization (aCGH) data.

Proper citation: CNA-HMMer (RRID:SCR_010924) Copy   

•   Source: SciCrunch Registry
  

http://www.zbh.uni-hamburg.de/?id=292

A web-based software tool for the integrative analysis of cancer genomics data. It stores different kinds of downstream processed data from multiple samples in a single database. A powerful search interface allows to dynamically filter the data to be displayed with respect to different criteria. The combination of AJAX technology and a fast visualization engine facilitates a highly dynamic visualization for large amounts of data. FISH Oracle 2 is able to simultaneously display different data sets, thus simplifying their comparison. Filter and display options can be changed on the fly. High quality image export enables the life scientist to easily communicate the results, e.g. in presentations or publications. A comprehensive data administration assures to keep track of the data stored in the database.

Proper citation: FISH Oracle (RRID:SCR_010927) Copy   

•   Source: SciCrunch Registry
  

http://www.softgenetics.com/CGHExplorer.html

An easy-to-use software tool for analyzing two color copy number alteration arrays from multiple platforms, including Agilent Technologies, Illumina, AffyMetrix, NimbleGen and others.

Proper citation: CGH Explorer (RRID:SCR_010920) Copy   

•   Source: SciCrunch Registry
  

http://owww.molgen.mpg.de/~abt_rop/molecular_cytogenetics/GenomeCAT.html

A software for the analysis and visualization of array CGH data.

Proper citation: CGHPRO (RRID:SCR_010921) Copy   

•   Source: SciCrunch Registry
  

http://cran.r-project.org/web/packages/cghseg/index.html

THIS RESOURCE IS NO LONGER IN SERVICE. Documented on January 9, 2023. Software R package dedicated to the analysis of CGH profiles using segmentation models.

Proper citation: CGHseg (RRID:SCR_010922) Copy   

•   Source: SciCrunch Registry
  

http://www.bumc.bu.edu/busm/

Boston University School of Medicine (BUSM) is a major research institution, providing an exceptional environment for students interested in basic science, clinical investigation, or public health and health services oriented research. BUSM has 660 medical students, and a similar number of graduate students in the medical school actively engaged in the study of medicine and the biomedical sciences.

Proper citation: Boston University School of Medicine; Massachusetts; USA (RRID:SCR_011100) Copy   

•   Source: SciCrunch Registry
  

http://pharmacy.auburn.edu/

The James I. Harrison, Sr. School of Pharmacy, established in 1885, is the oldest professional school at Auburn University. It is the only public pharmacy school in Alabama and is also the only institution in the State that offers a graduate program in Pharmaceutical Sciences. Post-graduate education and continuing education are provided to practitioners across Alabama. Each year, the School receives two to three applications for every admission seat in the professional program. The Harrison School of Pharmacy faculty is a highly qualified group of educators who are nationally recognized for teaching, research and scholarship. The three departments of faculty within the Harrison School of Pharmacy are specialized for Pharmaceutical Sciences, Pharmacy Care Systems, and Pharmacy Practice.

Proper citation: Auburn University; Harrison School of Pharmacy (RRID:SCR_011101) Copy   

•   Source: SciCrunch Registry
  

http://www.atr.jp/index_e.html

ATR is a unique private Company established in Kansai region March 1986through the broad support of industrygovernment and academiawith the aim of promoting fundamental and innovative RD activities as well as contributing to society in a wide range of telecommunication fields For the last quarter century since our foundation outstanding research outcomes have been steadily achieved in such fields as neuro/knowledge science intelligent roboticslanguage translation and wireless communication through original and innovative research activities and collaboration work with various universities research institutesand companies within and outside of Japan. Research and development for information and communication technology is indispensable to the formation of safe and secure society as well as a true communication societywhich will provide people with a more satisfying living environment by facilitating human communicationIn addition to continuous efforts in highquality advanced research and developmentwe are determined to focus on the feasibility of broadly applying our research results in society and making them more useful and accessible to a variety of people New Mission * To promote pioneering and innovative research on information and communication-related fields with global collaboration among industry, academia and government * To contribute to a wide variety of welfare of society and humanity by outstanding achievements, and to develop highly-professional human resources * To lead growth of Kansai Science City as a center of excellence in the world

Proper citation: ATR; Kyoto; Japan (RRID:SCR_011102) Copy   

•   Source: SciCrunch Registry
  

http://base.thep.lu.se/

A comprehensive management application for information, data, and analysis of microarray experiments, available as free open source software.

Proper citation: BASE (RRID:SCR_010937) Copy   

•   Source: SciCrunch Registry
  

http://linus.nci.nih.gov/BRB-ArrayTools.html

An integrated software package for the visualization and statistical analysis of DNA microarray gene expression data., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025.

Proper citation: BRB-ArrayTools (RRID:SCR_010938) Copy   

•   Source: SciCrunch Registry
  

http://genovar.sourceforge.net/

A Detection and Visualization software tool for Genomic Variants.

Proper citation: Genovar (RRID:SCR_010930) Copy   

•   Source: SciCrunch Registry
  

http://www.babraham.ac.uk/

Life sciences Institute within University of Cambridge, England. Focuses on the BBSRC strategic objective of research into healthy ageing by understanding basic molecular processes. Benefits from provision of core facilities like imaging, flow cytometry, next generation sequencing, mass spectrometry and small animal facilities. Has tradition of sustained innovation in areas of lipid and calcium signalling, in immunology and in genetics.

Proper citation: Babraham Institute (RRID:SCR_011106) Copy   

•   Source: SciCrunch Registry
  

http://www.arrayanalysis.org/

Tools for microarray quality control and pre-processing.

Proper citation: ArrayAnalysis.org (RRID:SCR_010932) Copy   

•   Source: SciCrunch Registry
  

http://www.bradley.edu/

Founded by Lydia Moss Bradley in 1897, Bradley University is a private, independent university offering undergraduate, graduate, and continuing education programs in the liberal and fine arts, the sciences, business administration, communications, education, engineering, and the health sciences. Our residential campus of 6,000 students blends large school opportunities with a small school personality where there is a commitment to excellent teaching and personal attention to students. Bradley''s comprehensive programs offer an effective integration of liberal education, professional preparation, and personal and social development.

Proper citation: Bradley University; Illinois; USA (RRID:SCR_011109) Copy   

•   Source: SciCrunch Registry
  

http://www1.biu.ac.il/indexE.php

Public research university in the city of Ramat Gan the Tel Aviv District, Israel. Established in 1955, Bar Ilan is Israel's second-largest academic institution.

Proper citation: Bar-Ilan University; Ramat Gan; Isreal (RRID:SCR_011111) Copy   

•   Source: SciCrunch Registry
  

http://www.battelle.org/

A private nonprofit applied science and technology development company that conducts research and development, designs and manufactures products, and delivers critical services for government and commercial customers. It serves the national security, health and life sciences, and energy and environmental industries.

Proper citation: Battelle Memorial Institute; Ohio; USA (RRID:SCR_011112) Copy   

•   Source: SciCrunch Registry
  

http://zhanglab.c2b2.columbia.edu/index.php/MCarts

A hidden Markov model (HMM)-based software to predict clusters RNA motif sites.

Proper citation: mCarts (RRID:SCR_010902) Copy   

•   Source: SciCrunch Registry
  

http://software.big.ac.cn/MeRIP-PF.html

A high-efficiency and easy-to-use analysis pipeline for MeRIP-Seq peak-finding at high resolution, which compares distributions of reads between immunoprecipitation sample and control sample.

Proper citation: MeRIP-PF (RRID:SCR_010904) Copy   

•   Source: SciCrunch Registry
  

https://code.google.com/p/bsolana/

An approach for the analysis of two-base encoding bisulfite sequencing data.

Proper citation: B-SOLANA (RRID:SCR_010905) Copy   

•   Source: SciCrunch Registry