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http://www.cs.ucr.edu/~tanaseio/metaphyl.htm

Software implementing a supervised classification method for metagenomic samples that takes advantage of the natural structure of microbial community data encoded by phylogenetic trees.

Proper citation: MetaPhyl (RRID:SCR_001169) Copy   

•   Source: SciCrunch Registry

http://www.ohri.ca/FacilitiesAndServices/

Portal to research facilities and services within the Ottawa Hospital Research Institute. Facilities and services include access to their bioinformatics facility, flow cytometry facility, human pluripotent stem cell facility, and their clinical research lab.

Proper citation: Ottawa Hospital Research Institute Labs and Facilities (RRID:SCR_001045) Copy   

•   Source: SciCrunch Registry

http://download.cnet.com/icyou-Health-Video/3000-2129_4-75046330.html

THIS RESOURCE IS NO LONGER IN SERVICE, documented on August 18, 2016. icyou is an internet resource of health-related video clips submitted by users. Health topics covered in videos can range anywhere from infectious diseases to fitness and exercise, with videos generally being shorter than 10 minutes in length. Videos also contain information on treatment and procedures, medical fields, and health politics and policy. These videos may or may not be authored by licensed medical personnel. All videos are searchable, and users can also choose to upload their own healthcare-related videos. In addition to gathering healthcare video from the best sources on the Web and beyond, icyou.com can call on its own award-winning health reporting team to cover the latest issues and trends. Through its parent company Benefitfocus, icyou.com has full access to the Benefitfocus Media Studio, a state-of-the-art HD facility located in Charleston, South Carolina. This studio is the only one of its kind devoted solely to creating healthcare-oriented video content. In it, the Benefitfocus Media team creates up-to-the-minute reports, tutorials, features and more that help illuminate its users about the complexities of the many facets of healthcare.

Proper citation: icyou Health Videos (RRID:SCR_001167) Copy   

•   Source: SciCrunch Registry

https://github.com/akiomiyao/tif

A search program to detect insertions of transposable element from short reads of next generation sequencer.

Proper citation: Transposon Insertion Finder (RRID:SCR_001159) Copy   

•   Source: SciCrunch Registry

http://www.mcw.edu/

Private and freestanding medical school and graduate school of sciences in Milwaukee, Wisconsin. The institution offers medical degrees as well as masters and PhD-level studies in areas such as biochemistry, cell biology, and community and public health.

Proper citation: Medical College of Wisconsin; Wisconsin; USA (RRID:SCR_001077) Copy   

•   Source: SciCrunch Registry

http://www.ndsu.edu/

Public research university in North Dakota, USA. It is a land-grant university that focuses on agriculture and the applied sciences. In addition, it offers undergraduate and graduate degrees in a wide variety of areas including engineering, science and mathematics, health professions, business, and agriculture and food systems studies.

Proper citation: North Dakota State University; North Dakota; USA (RRID:SCR_001110) Copy   

•   Source: SciCrunch Registry

http://www.ou.edu/

A coeducational public research university located in Oklahoma, USA. The institution confers undergraduate and graduate degrees in fields such as law, medicine, aviation, energy management, history of science, and Native American studies.

Proper citation: University of Oklahoma; Oklahoma; USA (RRID:SCR_001074) Copy   

•   Source: SciCrunch Registry

http://www.adelaide.edu.au/

Public research university in Adelaide, South Australia. It is known for its focus on research and emphasis on moving towards commercialization of research.

Proper citation: University of Adelaide; Adelaide; Australia (RRID:SCR_001075) Copy   

•   Source: SciCrunch Registry

http://www.cognitiveatlas.org/concept/Auditory_stream_segregation

An entry of the Cognitive Atlas which defines the term speech perception.

Proper citation: Speech Perception (RRID:SCR_001114) Copy   

•   Source: SciCrunch Registry

https://www.athensresearch.com/

Commercial supplier of bioproducts for studies of inflammation, autoimmune disease, cancer, coronary disease, Alzheimer's Disease and more. These include antibodies, enzymes, coagulation factors, and assay kits.

Proper citation: Athens Research and Technology (RRID:SCR_001079) Copy   

•   Source: SciCrunch Registry

http://www.bioconductor.org/packages/2.13/bioc/html/bsseq.html

R package with tools for analyzing and visualizing bisulfite sequencing data.

Proper citation: bsseq (RRID:SCR_001072) Copy   

•   Source: SciCrunch Registry

http://www.bioconductor.org/packages/release/bioc/html/MmPalateMiRNA.html

THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 23,2022. Software R package written for analysis of murine palate miRNA two-color expression data.

Proper citation: MmPalateMiRNA (RRID:SCR_001070) Copy   

•   Source: SciCrunch Registry

http://www.bioconductor.org/packages/2.10/bioc/html/R453Plus1Toolbox.html

R software toolbox of functions for the analysis of data generated by Roche's 454 sequencing platform. Additional functions are included for quality assurance, annotation and visualization of detected variants, complementing the software tools shipped by Roche with their product. A pipeline for the detection of structural variants is provided.

Proper citation: R453Plus1Toolbox (RRID:SCR_001105) Copy   

•   Source: SciCrunch Registry

http://www.academybiomed.com/

Commercial antibody supply company that focuses on providing antibodies for research in cardiovascular and atherosclerosis.

Proper citation: Academy Biomedical Company (RRID:SCR_001108) Copy   

•   Source: SciCrunch Registry

http://www.bioconductor.org/packages/release/bioc/html/RmiR.html

R package that contains functions to merge microRNA and respective targets using different databases.

Proper citation: RmiR (RRID:SCR_001069) Copy   

•   Source: SciCrunch Registry

http://bioinformatics.mdanderson.org/main/BreakFusion

Software package written in Perl and C++ that provides a computational pipeline for identifying gene fusions from RNA-seq data.

Proper citation: BreakFusion (RRID:SCR_001102) Copy   

•   Source: SciCrunch Registry

http://www.medschool.vcu.edu/

Medical school division of Virginia Commonwealth University.

Proper citation: Virginia Commonwealth University School of Medicine; Virginia; USA (RRID:SCR_001061) Copy   

•   Source: SciCrunch Registry

http://www.ed.gov/

The United States federal government Department of Education, which oversees policies on federal financial aid for education, collecting data and disseminating research, and working to promote key educational discussions and equal access to education.

Proper citation: U.S. Department of Education (RRID:SCR_001060) Copy   

•   Source: SciCrunch Registry

https://omictools.com/npebseq-tool

A method for non-parametric, empirical Bayesian-based analysis of RNA-seq count data.

Proper citation: NPEBseq (RRID:SCR_001014) Copy   

•   Source: SciCrunch Registry

https://omictools.com/splitseek-tool

THIS RESOURCE IS NO LONGER IN SERVICE, documented September 20, 2016. A program for de novo prediction of splice junctions in RNA-seq data.

Proper citation: SplitSeek (RRID:SCR_001012) Copy   

•   Source: SciCrunch Registry