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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Gene Expression Ontology Resource Report Resource Website 1+ mentions |
Gene Expression Ontology (RRID:SCR_010326) | GEXO | controlled vocabulary, data or information resource, ontology | An application ontology for the domain of gene expression. The ontology integrates fragments of GO and MI with data from GOA, IntAct, UniProt, NCBI, KEGG and orthology relations. | obo | is listed by: BioPortal | nlx_157413 | SCR_010326 | 2026-09-12 12:57:17 | 6 | |||||||||
|
General Formal Ontology Resource Report Resource Website |
General Formal Ontology (RRID:SCR_010328) | GFO | controlled vocabulary, data or information resource, ontology | A top-level ontology integrating objects and processes. | owl | is listed by: BioPortal | nlx_157416 | http://www.onto-med.de/ontologies/gfo/ | SCR_010328 | 2026-09-12 12:57:17 | 0 | ||||||||
|
General Formal Ontology for Biology Resource Report Resource Website |
General Formal Ontology for Biology (RRID:SCR_010329) | GFO-BIO | controlled vocabulary, data or information resource, ontology | A biological core ontology built on the General Formal Ontology. | owl | is listed by: BioPortal | nlx_157417 | http://www.onto-med.de/ontologies/gfo-bio/ | SCR_010329 | 2026-09-12 12:57:17 | 0 | ||||||||
|
AllSeq Resource Report Resource Website |
AllSeq (RRID:SCR_010053) | AllSeq | service resource | Free online tools to find the best Sequencing Service provider for your project. | is listed by: OMICtools | Free | OMICS_01726 | SCR_010053 | 2026-09-12 12:57:15 | 0 | |||||||||
|
Cognitive Atlas Ontology Resource Report Resource Website |
Cognitive Atlas Ontology (RRID:SCR_010295) | COGAT | controlled vocabulary, data or information resource, ontology | Ontology that characterizes the state of current thought in cognitive science. It defines a set of mental concepts along with a set of mental tasks, and the measurement relations between those classes. | owl |
is listed by: BioPortal has parent organization: Cognitive Atlas |
nlx_157368 | SCR_010295 | 2026-09-12 12:57:16 | 0 | |||||||||
|
Common Terminology Criteria for Adverse Events Resource Report Resource Website 10+ mentions |
Common Terminology Criteria for Adverse Events (RRID:SCR_010296) | CTCAE | controlled vocabulary, data or information resource, ontology | A coding system for reporting adverse events that occur in the course of cancer therapy. It was derived from the Common Toxicity Criteria (CTC) v2.0 and is maintained by the Cancer Therapy Evaluation Program (CTEP) at the National Cancer Institution (NCI). | owl |
is listed by: BioPortal has parent organization: National Cancer Institute |
Cancer | nlx_157370 | SCR_010296 | 2026-09-12 12:57:16 | 14 | ||||||||
|
Comparative Data Analysis Ontology Resource Report Resource Website |
Comparative Data Analysis Ontology (RRID:SCR_010297) | CDAO | controlled vocabulary, data or information resource, ontology | A formalization of concepts and relations relevant to evolutionary comparative analysis, such as phylogenetic trees, OTUs (operational taxonomic units) and compared characters (including molecular characters as well as other types). CDAO is being developed by scientists in biology, evolution, and computer science | owl, biology, evolution, computer science, comparative analysis, phylogenetic tree, operational taxonomic unit, compared character, molecular |
is listed by: BioPortal is listed by: OBO is listed by: SourceForge |
Public domain | nlx_157371 | http://purl.bioontology.org/ontology/CDAO, http://purl.obolibrary.org/obo/cdao.owl | SCR_010297 | 2026-09-12 12:57:16 | 0 | |||||||
|
Genome Component Ontology Resource Report Resource Website 1+ mentions |
Genome Component Ontology (RRID:SCR_010330) | GCO | controlled vocabulary, data or information resource, ontology | Ontology to define the abstract division of the total genetic information of an organism by its physical separation into different components, thereby providing a high level reference point to which more specific descriptions of the characteristics of these components can be linked. | owl | is listed by: BioPortal | nlx_157418 | SCR_010330 | 2026-09-12 12:57:17 | 1 | |||||||||
|
Content Archive Resource Exchange Lexicon Resource Report Resource Website |
Content Archive Resource Exchange Lexicon (RRID:SCR_010298) | CARELEX | controlled vocabulary, data or information resource, ontology | Categories and terms used to classify content (documents, images, etc) in electronic content repositories for life science / BioPharma. Initial version contains content model for use with clinical trial electronic Trial Master Files or eTMF archives. A Content model contains content classification categories (classes) and metadata properties (data properties). Data properties should be assigned to each Content Type. Recent changes include: addition of electronic signature support, medical imaging classifications. | owl | is listed by: BioPortal | nlx_157377 | http://www.carelex.org | SCR_010298 | 2026-09-12 12:57:16 | 0 | ||||||||
|
University of Lyon; France Resource Report Resource Website 1+ mentions |
University of Lyon; France (RRID:SCR_010178) | university | University of Lyon, located in Lyon and Saint-Étienne, France, is a center for higher education and research comprising 11 members and 24 associated institutions. | is parent organization of: I3-CRB: Interoperable IT Infrastructure for Biological Resources Centres / Biobanks - France | nlx_30442 | http://www.univ-lyon2.fr/international-/ | SCR_010178 | 2026-09-12 12:57:15 | 1 | ||||||||||
|
Amphibian Gross Anatomy Ontology Resource Report Resource Website 1+ mentions |
Amphibian Gross Anatomy Ontology (RRID:SCR_010291) | AAO | controlled vocabulary, data or information resource, ontology | A structured controlled vocabulary of the anatomy of Amphibians. Note that AAO is currently being integrated into Uberon. | obo | is listed by: BioPortal | nlx_157316 | SCR_010291 | 2026-09-12 12:57:16 | 1 | |||||||||
|
Disease core ontology applied to Rare Diseases Resource Report Resource Website |
Disease core ontology applied to Rare Diseases (RRID:SCR_010308) | HRDO | controlled vocabulary, data or information resource, ontology | A core ontology consistent with a metamodel (disorders and groups of disorders, genes, clinical signs and their relations) and an instantiation of this metamodel with Orphanet Data (available on http://orphadata.org). Research experiments demonstrated (i) efficient classifications generation based on SPARQL Construct, (ii) perspectives in semantic audit of a knowledge base, (iii) semantic comparison with OMIM (www.omim.org) using proximity measurements and (iv) opened perspectives in knowledge sharing (LORD, http://lord.bndmr.fr). Current production services of Orphanet developed ORDO, released in 2014, an ontology synchronized with their production database. | owl |
is listed by: BioPortal is related to: Orphanet |
INSERM | nlx_157388 | SCR_010308 | 2026-09-12 12:57:17 | 0 | ||||||||
|
San Diego State University; California; USA Resource Report Resource Website 1+ mentions |
San Diego State University; California; USA (RRID:SCR_009874) | SDSU | university | Public research university in San Diego, California. Founded in 1897 as San Diego Normal School, it is the third-oldest university in the 23-member California State University system. |
is parent organization of: PRINSEQ is parent organization of: San Diego State University Flow Cytometry and Live Imaging Core Facility |
nlx_156724, Wikidata:Q913861, ISNI:0000 0001 0790 1491, Crossref funder ID:100007099, grid.263081.e | https://ror.org/0264fdx42 | SCR_009874 | San Diego State University | 2026-09-12 12:57:15 | 1 | ||||||||
|
IsoEM Resource Report Resource Website 10+ mentions |
IsoEM (RRID:SCR_009993) | IsoEM | software resource | Software package that can be used to infer isoform and gene expression levels from high-throughput transcriptome sequencing (RNA-Seq) data. | bio.tools |
is listed by: OMICtools is listed by: bio.tools is listed by: Debian has parent organization: University of Connecticut; Connecticut; USA |
biotools:isoem, OMICS_01278 | https://bio.tools/isoem | SCR_009993 | 2026-09-12 12:57:15 | 10 | ||||||||
|
Centre for Reviews and Dissemination Resource Report Resource Website 10+ mentions |
Centre for Reviews and Dissemination (RRID:SCR_010267) | CRD | institution | A research department of the University of York provides research-based information about the effects of health and social care interventions via their databases. The institute undertakes systematic reviews evaluating research evidence on health and public health questions of national and international importance. | evidence review, research review, public health, evidence synthesis, FASEB list | is related to: PROSPERO | National Institute for Health Research UK | Public, Available to the research community | nlx_156926 | http://www.york.ac.uk/ | SCR_010267 | University of York Centre for Reviews and Dissemination | 2026-09-12 12:57:16 | 40 | |||||
|
Current Procedural Terminalogy Hierarchy Resource Report Resource Website |
Current Procedural Terminalogy Hierarchy (RRID:SCR_010300) | CPTH | controlled vocabulary, data or information resource, ontology | Metathesaurus of current procedural terminalogy (CPT). | umls | is listed by: BioPortal | nlx_157379 | SCR_010300 | 2026-09-12 12:57:17 | 0 | |||||||||
|
Dengue Fever Ontology Resource Report Resource Website |
Dengue Fever Ontology (RRID:SCR_010304) | IDODEN | controlled vocabulary, data or information resource, ontology | An ontology for dengue fever. | owl | is listed by: BioPortal | Dengue fever | nlx_157383 | http://code.google.com/p/dengue-fever-ontology/ | SCR_010304 | 2026-09-12 12:57:17 | 0 | |||||||
|
Dermatology Lexicon Resource Report Resource Website |
Dermatology Lexicon (RRID:SCR_010305) | DERMLEX | controlled vocabulary, data or information resource, ontology | A standardized terminology of dermatologic diagnoses, therapies, procedures, and laboratory tests. | owl | is listed by: BioPortal | nlx_157384 | SCR_010305 | 2026-09-12 12:57:17 | 0 | |||||||||
|
Diagnosis Ontology of Clinical Care Classification Resource Report Resource Website |
Diagnosis Ontology of Clinical Care Classification (RRID:SCR_010306) | DOCCC | controlled vocabulary, data or information resource, ontology | Diagnosis ontology of clinical care classification. | owl | is listed by: BioPortal | nlx_157385 | SCR_010306 | 2026-09-12 12:57:17 | 0 | |||||||||
|
Phyre Resource Report Resource Website 500+ mentions |
Phyre (RRID:SCR_010270) | algorithm | A structure prediction system to reliably detect remote homologies. | has parent organization: Imperial College London; London; United Kingdom | PMID:19247286 | nlx_156932 | SCR_010270 | Protein Homology/Anology Recognition Engine | 2026-09-12 12:57:16 | 758 |
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