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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Closed Loop Automated Reaching Apparatus Resource Report Resource Website 1+ mentions |
Closed Loop Automated Reaching Apparatus (RRID:SCR_022365) | CLARA | data or information resource, instrument resource, portal, project portal | Closed loop automated reaching apparatus for interrogating complex motor behaviors.Mechanical components include behavior box, series of cameras, and food pellet dispenser. Single workstation computer manages cameras, communicates with microcontroller, and analyzes mouse behavior in real time using modules extracted from DeepLabCut. Integrates fully automated, markerless kinematic tracking of multiple features to classify animal behavior and delivers neural stimulation based on behavioral outcomes. CLARA is compatible with advanced neurophysiological tools, enabling testing of neurostimulation devices and identification of novel neurological biomarkers.System fully automates trial initiation and pellet delivery and is capable of accurately delivering stimulation in response to trial outcome with short latency. | OpenBehavior, Instrument, interrogating complex motor behaviors apparatus, mouse behavior apparatus, markerless kinematic tracking, kinematic data, animal behavior, neural stimulation |
is listed by: OpenBehavior is related to: Behavioral Segmentation of Open-field in DeepLabCut has parent organization: University of Colorado School of Medicine; Colorado; USA |
DOI:10.1088/1741-2552/ac1ed1 | Free, Freely available | https://github.com/wryanw/CLARA_DLC | SCR_022365 | Closed Loop Automated Reaching Apparatus Project | 2026-09-19 12:55:22 | 1 | ||||||
|
COMPASS Resource Report Resource Website 100+ mentions |
COMPASS (RRID:SCR_022329) | data or information resource, instrument resource, portal, project portal | Non invasive, infrared activity and sleep measurement system that uses passive infrared sensors and Arduino microprocessor. Publication provides protocol for assembling COMPASS as well as provides support protocols and python scripts for data analysis, best practices for optimum results, troubleshooting, and alternative protocols for different use scenarios. | OpenBehavior, Instrument, behavior apparatus, behavior measurement, sleep tracking, infrared sensors, Arduino microprocessor | is listed by: OpenBehavior | DOI:10.1002/cpmo.81 | https://github.com/MRC-Harwell/sleep-tracking | SCR_022329 | Continuous Open Mouse Phenotyping of Activity and Sleep Status | 2026-09-19 12:55:21 | 265 | ||||||||
|
TetrODrive Resource Report Resource Website |
TetrODrive (RRID:SCR_022326) | data or information resource, instrument resource, portal, project portal | 3D printed microdrive for electrophysiology and optophysiology. Consists of main body and head. Used for in vivo tetrode recording, optical imaging, and optogenetic manipulation in freely moving mice.Design files and build instructions for this device can be found on TetrODrive GitHub.Microdrive can be assembled in 15 min and price for all materials, including 3D printer, is lower than single commercial microdrive. | OpenBehavior, Instrument, microdrive, behavior measurement, freely moving, neural recording, electrical recording, optical imaging, neural modulation, optogenetics | is listed by: OpenBehavior | DOI:10.1088/1741-2552/abf608 | Free, Freely available | https://github.com/MarcelMB/TetrODrive | SCR_022326 | 2026-09-19 12:55:21 | 0 | ||||||||
|
Florida research open source synchronization tool Resource Report Resource Website |
Florida research open source synchronization tool (RRID:SCR_022344) | FROST | data or information resource, instrument resource, portal, project portal | Open source system built around Arduino based microcontroller for analog and digital input and synchronization combined with custom printed circuit board. Hardware and Arduino-based firmware used to synchronize experimental and electrophysiological data. | OpenBehavior, Instrument, device, synchronization tool, electrophysiology experiments, neural signal analysis, neural recording, electrical recording, synchronizing experimental and electrophysiological data. |
is listed by: OpenBehavior has parent organization: University of Florida; Florida; USA |
DOI:10.1016/j.jneumeth.2020.108800 | Free, Freely available | https://github.com/Brain-Mapping-Lab/FROST | SCR_022344 | FROST project | 2026-09-19 12:55:21 | 0 | ||||||
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pyOS-5 project Resource Report Resource Website |
pyOS-5 project (RRID:SCR_022335) | data or information resource, instrument resource, portal, project portal | Open source operant box system optimized for use with tethered animals. System includes hardware and software. Control electronics are build on pyControl, controlling custom PCB integrating 5 infra-red break-beam sensors and 5 stimulus LEDs, single nose-poke for reward receptacle, stepper motor for control of custom peristaltic pump for reward delivery, audio board for tone generation through attached speaker, house light and fan, LED driver for optogenetic stimulation, and bidirectional communication with external devices via TTL pulses. | OpenBehavior, Instrument, operant box system, tethered animals, behavior apparatus, neurophysiology |
is listed by: OpenBehavior is related to: pyOS-5 |
DOI:10.1038/s41598-021-01717-1 | Free, Freely available | SCR_022335 | Python based operant box system in 5-choice design, pyOS-5 | 2026-09-19 12:55:21 | 0 | ||||||||
|
LED Zappelin’ Resource Report Resource Website 1+ mentions |
LED Zappelin’ (RRID:SCR_022560) | data or information resource, portal, topical portal | Open source LED controller for arbitrary spectrum visual stimulation and optogenetics during 2 photon imaging. Device that rapidly time interleaves stimulation and detection epochs during two photon imaging. | Instrument, OpenBehavior, LED controller, arbitrary spectrum visual stimulation, optogenetics, two photon imaging, stimulation and detection, behavioral neuroscience |
is listed by: OpenBehavior has parent organization: University of Sussex; Brighton; United Kingdom |
PMID:35498254 | Free, Freely available | https://edspace.american.edu/openbehavior/project/led-zappelin/ | SCR_022560 | 2026-09-19 12:55:23 | 1 | ||||||||
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BD Biosciences: FACSymphony A5 Cell Analyzer Resource Report Resource Website 10+ mentions |
BD Biosciences: FACSymphony A5 Cell Analyzer (RRID:SCR_022538) | instrument resource | Flow cytometer as novel cell analyzer that leverages inherent benefits of flow cytometry and enables simultaneous measurement of up to 50 different characteristics of single cell. | Flow cytometer, cell analyzer, simultaneous measurement, instrument, equipment, USEDit | Restricted | https://raw.githubusercontent.com/SciCrunch/RRID-Instruments/refs/heads/main/PDF/SCR_022538.pdf | Model_Number_FACSymphony_A5 | SCR_022538 | BD FACSymphony A5 | 2026-09-19 12:55:23 | 15 | ||||||||
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Hamamatsu: NanoZoomer S60 Digital slide scanner Resource Report Resource Website 10+ mentions |
Hamamatsu: NanoZoomer S60 Digital slide scanner (RRID:SCR_022537) | instrument resource | Whole slide scanner that scan glass slides to convert them to digital data. NanoZoomer S60 supports both brightfield imaging, fluorescence imaging and double size slides. | Whole slide scanner, scan glass slides, convertion to digital data, instrument, equipment, USEDit | is listed by: USEDit | Restricted | Model_Number_NanoZoomer_S60 | SCR_022537 | NanoZoomer S60 Digital slide scanner | 2026-09-19 12:55:23 | 15 | ||||||||
|
USVCAM Resource Report Resource Website |
USVCAM (RRID:SCR_022747) | data or information resource, instrument resource, portal, project portal | Open source acoustic camera system for measuring ultrasound communication in rodents. System includes small phased microphone array combined with camera and comprises USV segmentation algorithms with modification for overlapping vocalizations that results in high accuracy. Enables simpler and faster USV localization and assignment. | OpenBehavior, instrument, acoustic camera system, measuring ultrasound communication in rodents |
is listed by: OpenBehavior has parent organization: University of Toyama; Toyama; Japan |
PMID:35982786 | Free, Freely available | https://edspace.american.edu/openbehavior/?s=USVCAM | SCR_022747 | USVCAM project, ultrasonic vocalizations camera | 2026-09-19 12:55:24 | 0 | |||||||
|
Artec 3D: Leo Resource Report Resource Website |
Artec 3D: Leo (RRID:SCR_022587) | instrument resource | Wireless and fully standalone professional 3D scanner with new NVIDIA Jetson TX2 processor onboard. 3D scanning solution for data capture. | Artec3D, 3D scanner, NVIDIA Jetson TX2 processor, data capture, instrument, equipment, USEDit |
is listed by: USEDit is listed by: MfN Berlin Micro-CT Laboratory Core Facility |
Restricted | https://raw.githubusercontent.com/SciCrunch/RRID-Instruments/refs/heads/main/PDF/SCR_022587.pdf | SCR_022587 | 2026-09-19 12:55:23 | 0 | |||||||||
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Olympus: BX53 Upright Microscope Resource Report Resource Website 10+ mentions |
Olympus: BX53 Upright Microscope (RRID:SCR_022568) | instrument resource | LED illuminator for BX53 is equivalent to or better than 100 W halogen lamp, delivering brightness appropriate for teaching or contrast methods. Can be customized for different observation methods, such as phase contrast and fluorescence, with modular components. | Olympus, LED illuminator, phase contrast and fluorescence, light microscopy, Instrument, Equipment, USEDit | is listed by: USEDit | Restricted | Model_Number_BX53 | SCR_022568 | 2026-09-19 12:55:23 | 16 | |||||||||
|
Thermo Fisher: Applied Biosystems: QuantStudio 1 RealTime PCR System Resource Report Resource Website 1+ mentions |
Thermo Fisher: Applied Biosystems: QuantStudio 1 RealTime PCR System (RRID:SCR_023003) | instrument resource | qPCR instrument with basic features ideal for those new to qPCR or those who have limited budget. System offers quality, reliability, and advanced user experience of QuantStudio family of instruments. | Instrument, Equipment, USEDit, qPCR instrument, Applied Biosystems | is listed by: USEDit | SCR_023003 | QuantStudio™ 1 Real-Time PCR | 2026-09-19 12:55:27 | 6 | ||||||||||
|
pyPhotometry Resource Report Resource Website 1+ mentions |
pyPhotometry (RRID:SCR_022940) | data or information resource, instrument resource, portal, project portal | Open source Python based hardware and software for fiber photometry data acquisition. System includes compact, low cost, data acquisition board built around Micropython microcontroller, and cross platform graphical user interface for controlling acquisition and visualising signals. Can acquire two analog and two digital signals, and control two external LEDs via built in LED drivers. Time division multiplexed illumination allows independent readout of fluorescence evoked by different excitation wavelengths from single photoreceiver signal. | OpenBehavior, instrument, fiber photometry, Micropython microcontroller, analog control signals, data acquisition and analysis | is listed by: OpenBehavior | PMID:30837543 | Free, Available for download, Freely available | https://github.com/pyPhotometry | SCR_022940 | 2026-09-19 12:55:26 | 4 | ||||||||
|
Thermo Fisher: NanoDrop One/OneC Microvolume UV Vis Spectrophotometer Resource Report Resource Website 10+ mentions |
Thermo Fisher: NanoDrop One/OneC Microvolume UV Vis Spectrophotometer (RRID:SCR_023005) | instrument resource | Benchtop spectrophotometer designed for DNA, RNA, and protein quantification, one sample at time using only 1–2 uL of sample without dilution, even for highly concentrated samples. | Instrument, Equipment, USEDit, NanoDrop, Spectrophotometer, Thermo Scientific, 1 ul sample, 2 uL sample | is listed by: USEDit | SCR_023005 | NanoDrop™ One/OneC Microvolume UV-Vis Spectrophotometer, NanoDrop One OneC Microvolume UV Vis Spectrophotometer | 2026-09-19 12:55:27 | 28 | ||||||||||
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Stoelting: Tissue Slicer Resource Report Resource Website 1+ mentions |
Stoelting: Tissue Slicer (RRID:SCR_022902) | instrument resource | Tissue Slicer with conventional vernier micrometer, resolution 10 micron. Designed to prepare thin slices of living brain, slicing other tissues, blocking fixed tissue for histology, and slicing electrophoretic gels. Sections as thin as 150 microns can be prepared. | USEDit, instrument, equipment, thin slices, living brain, tissue slicer, blocking fixed tissue, histology, slicing electrophoretic gels | is listed by: USEDit | Restricted | SCR_022902 | Stoelting 51425 Tissue Slicer | 2026-09-19 12:55:26 | 1 | |||||||||
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2Biol: BP-2000 Blood Pressure Analysis System for Mice and Rats Resource Report Resource Website 1+ mentions |
2Biol: BP-2000 Blood Pressure Analysis System for Mice and Rats (RRID:SCR_022985) | instrument resource | Computerized, non invasive system for measuring mouse and rat blood pressure. Blood pressure analyzer is standard in transgenic and knockout mouse research. | 2Biological Instruments, VisiTech Systems, non-invasive blood pressure analyzer, USEDit, Instrument, Equipment | Restricted | https://raw.githubusercontent.com/SciCrunch/RRID-Instruments/refs/heads/main/PDF/SCR_022985.pdf | https://www.2biol.com/2biol_BP%20Blood%20Pressure%20Recorder.htm | SCR_022985 | BP-2000 Blood Pressure Analysis System™ for Mice and Rats, BP-2000 Blood Pressure Analysis System | 2026-09-19 12:55:27 | 2 | ||||||||
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FEI: Tecnai T12 electron microscope Resource Report Resource Website 1+ mentions |
FEI: Tecnai T12 electron microscope (RRID:SCR_022981) | instrument resource | Tecnai T12 microscope combines all imaging, diffraction, and analytical techniques at good spatial resolution and detection efficiency. Transmission electron microscope with operating voltage range of 20 to 120 kV. FEI Tecnai T12 120kV TEM and 2k TVIPS camera. | Transmission electron microscope, operating voltage range of 20 to 120 kV, 2k TVIPS camera, USEDit, Instrument, Equipment | SCR_022981 | Max Planck Institute of Molecular Cell Biology and Genetics Electron Microscopy Facillity FEI Tecnai T12 electron microscope | 2026-09-19 12:55:26 | 3 | |||||||||||
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Warner Instruments: Dual Channel Temperature Controller Model TC-344C Resource Report Resource Website 1+ mentions |
Warner Instruments: Dual Channel Temperature Controller Model TC-344C (RRID:SCR_023068) | instrument resource | Temperature controller. Each channel supplies up to 22 watts into load of 10 ohms. Heat set point is controlled automatically in Auto mode via thermistor feedback. Loop speed selector provides three feedback response times to optimize tp thermal stability of device being heated. Heat set-point may also be manually controlled in Manual mode. | Warner Instruments LLC, USEDit, instrument, equipment, temperature controller, dual channel | is listed by: USEDit | Restricted | Model_Number_TC_344C | SCR_023068 | Dual Channel Temperature Controller | 2026-09-19 12:55:28 | 1 | ||||||||
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Oxford: Optronix GelCount Resource Report Resource Website 10+ mentions |
Oxford: Optronix GelCount (RRID:SCR_023219) | instrument resource | Mammalian cell colony, spheroid and organoid counter. PC software operated colony counter that automates detection, counting and analysis of mammalian cell colonies in multi-well plates, Petri dishes and T25 flasks. | PC software operated colony counter, mammalian cell colony, spheroid and organoid counter, colony counter, instrument, equipment, USEDit | Restricted | SCR_023219 | GelCount | 2026-09-19 12:55:32 | 15 | ||||||||||
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Thermo Fisher: Ion OneTouch 2 System Resource Report Resource Website |
Thermo Fisher: Ion OneTouch 2 System (RRID:SCR_023289) | instrument resource | Automated system used for generation of template positive Ion Sphere Particles for semiconductor sequencing. Performs template amplification as part of manual workflow for Ion PGM, Ion Proton, Ion S5, and Ion S5 XL systems. Provides scalable template preparation for all Ion semiconductor chips. Instrument has small footprint and fits easily on any bench top. | Ion Torrent, ion semiconductor chips, template preparation, template positive Ion Sphere Particles, semiconductor sequencing, instrument, equipment, USEDit | works with: Ion Torrent: Ion OneTouch ES | https://raw.githubusercontent.com/SciCrunch/RRID-Instruments/main/PDF/SCR_023289.pdf | https://www.thermofisher.com/document-connect/document-connect.html?url=https://assets.thermofisher.com/TFS-Assets%2FLSG%2Fmanuals%2FMAN0014388_IonOneTouch2Sys_UG.pdf | SCR_023289 | Ion Torrent™ Ion OneTouch™ 2 Instrument, Ion Torrent OneTouch 2 system, Ion OneTouch 2 Instrument | 2026-09-19 12:55:33 | 0 |
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