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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Sol Genomics Network - Bulk download Resource Report Resource Website |
Sol Genomics Network - Bulk download (RRID:SCR_007161) | data or information resource, data set | Allows users to download Unigene or BAC information using a list of identifiers or complete datasets with FTP., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025. | database, dataset, unigene, gene, bac, genomics, clone, array spot, unigene id, bac ends |
is related to: SGN has parent organization: Boyce Thompson Institute for Plant Research |
NSF 0820612; USDA CSREES |
THIS RESOURCE IS NO LONGER IN SERVICE | nif-0000-30227 | SCR_007161 | SciCrunch Registry | SGN bulk download | 2026-10-24 12:52:10 | 0 | |||||||
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University of Notre Dame; Indiana; USA Resource Report Resource Website 1+ mentions |
University of Notre Dame; Indiana; USA (RRID:SCR_006191) | institution, university |
is parent organization of: VectorBase is parent organization of: %MinMax is parent organization of: University of Notre Dame Integrated Imaging Core Facility is parent organization of: University of Notre Dame ND Biophysics Instrumentation Core Facility is parent organization of: Notre Dame Genomics and Bioinformatics Core Facility is parent organization of: Notre Dame Freimann Life Science Center Core Facility is parent organization of: University of Notre Dame Keck Center for Transgene Research Core Facility is parent organization of: Notre Dame University Magnetic Resonance Research Center Core Facility is parent organization of: Notre Dame University Mass Spectrometry and Proteomics Core Facility |
SCR_006191 | SciCrunch Registry | ND | 2026-10-24 12:52:08 | 7 | ||||||||||||
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Virtual NeuroMorphology Electronic Database Resource Report Resource Website 1+ mentions |
Virtual NeuroMorphology Electronic Database (RRID:SCR_007118) | data or information resource, data set | A database of virtually generated anatomically plausible neurons for several morphological classes, including cerebellar Purkinje cells, hippocampal pyramidal and granule cells, and spinal cord motoneurons. It presently contains 542 cells. In the trade neurons collection the database contains an amaral cell archive, neuron morpho reconstructions, and mouse alpha motoneurons. Their collection of generated neurons include motoneurons, Purkinje cells, and hippocampal pyramidal cells. | neuron, morphology, computational neuroanatomy, neuroanatomy, neuronal reconstruction, neuron model, purkinje cell, motor neuron, ca1, ca3, hippocampal pyramidal cell, axon, hippocampus, triceps surae | has parent organization: George Mason University; Virginia; USA | Human Brain Project ; NINDS R01-NS39600-01 |
Acknowledgement requested | nif-0000-10546 | http://krasnow.gmu.edu/cn3/L-Neuron/database/ http://krasnow1.gmu.edu/L-Neuron/L-Neuron/database/ | SCR_007118 | SciCrunch Registry | LN Database, L-Neuron Database | 2026-10-24 12:52:10 | 1 | ||||||
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University of Saskatchewan; Saskatchewan; Canada Resource Report Resource Website 1+ mentions |
University of Saskatchewan; Saskatchewan; Canada (RRID:SCR_007998) | institution, university | SCR_007998 | SciCrunch Registry | 2026-10-24 12:52:10 | 7 | ||||||||||||||
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OWL API Resource Report Resource Website 10+ mentions |
OWL API (RRID:SCR_005734) | OWL API | software resource, source code | The OWL API is a Java API and reference implementation for creating, manipulating and serializing OWL Ontologies. The latest version of the API is focused towards OWL 2. The OWLAPI underpins ontology browsing and editing tools and platforms such as SWOOP and Protege4. Note that this API, or any other OWL-based API, can be used without an integrated OWL parser if you download a pre-converted OWL file generated from OBO. See OBO Ontologies List for all OBO ontologies converted to OWL (we do not list the full complement of OWL-based APIs here, only those of direct relevance to GO). The OWL API includes the following components: * An API for OWL 2 and an efficient in-memory reference implementation * RDF/XML parser and writer * OWL/XML parser and writer * OWL Functional Syntax parser and writer * Turtle parser and writer * KRSS parser * OBO Flat file format parser * Reasoner interfaces for working with reasoners such as FaCT++, HermiT, Pellet and Racer Platform: Windows compatible, Mac OS X compatible, Linux compatible, Unix compatible | ontology, owl, api, java, software library, parser, writer |
is listed by: Gene Ontology Tools is related to: Gene Ontology has parent organization: University of Manchester; Manchester; United Kingdom has parent organization: SourceForge |
Open unspecified license - Free for academic use; available under either the LGPL or Apache Licenses | nlx_149195 | SCR_005734 | SciCrunch Registry | The OWL API, OWLAPI | 2026-10-24 12:52:08 | 15 | |||||||
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Vanderbilt Energy Balance Core Laboratory Resource Report Resource Website |
Vanderbilt Energy Balance Core Laboratory (RRID:SCR_006665) | access service resource, core facility, service resource | Core facility that provides the following services: Energy Expenditure Assessment, Body Composition Assessment, Physical Activity Assessment. This component of the core utilizes existing institutional resources for measurement of energy balance and provides personnel support that permit assessment of research in energy balance and nutrition assessment. | performing a clinical assessment |
is listed by: Eagle I has parent organization: Vanderbilt University; Tennessee; USA |
nlx_156655 | SCR_006665 | SciCrunch Registry | 2026-10-24 12:52:09 | 0 | ||||||||||
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SpliceDB Resource Report Resource Website 1+ mentions |
SpliceDB (RRID:SCR_006262) | SpliceDB | data or information resource, data set | Database of canonical and non-canonical mammalian splice sites. The information about verified splice site sequences for canonical and non-canonical sites is presented with the supporting evidence. Weight matrices were built for the major splice groups, which can be incorporated into gene prediction programs. | gene, expressed sequence tag, splice, canonical, non-canonical, splice site, sequence, data set, splice site sequence |
is listed by: OMICtools is listed by: 3DVC is related to: GenBank has parent organization: Wellcome Trust Sanger Institute; Hinxton; United Kingdom |
PMID:11125105 PMID:11058137 |
nlx_151853, OMICS_01892 | http://linux1.softberry.com/berry.phtml?topic=splicedb | http://genomic.sanger.ac.uk/spldb/SpliceDB.htm | SCR_006262 | SciCrunch Registry | SpliceDB: canonical and non-canonical splice site sequences in mammalian genes | 2026-10-24 12:52:09 | 2 | |||||
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Neurofitter Resource Report Resource Website 1+ mentions |
Neurofitter (RRID:SCR_005843) | Neurofitter | software resource, source code | Neurofitter is software for parameter tuning of electrophysiological neuron models. It automatically searches for sets of parameters of neuron models that best fit available experimental data, and therefore acts as an interface between neuron simulators, like Neuron or Genesis, and optimization algorithms, like Particle Swarm Optimization, Evolutionary Strategies, etc. | neuron, parameter, tuning, electrophysiology, model, neuron simulator, neuron model |
has parent organization: SourceForge has parent organization: University of Antwerp; Antwerp; Belgium has parent organization: Brandeis University; Massachusetts; USA has parent organization: Okinawa Institute of Science and Technology |
Okinawa Institute of Science and Technology | PMID:18974796 | GNU General Public License, v2 | nlx_149366 | SCR_005843 | SciCrunch Registry | 2026-10-24 12:52:08 | 1 | ||||||
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Dartmouth Shared Instruments Core Laboratory Resource Report Resource Website |
Dartmouth Shared Instruments Core Laboratory (RRID:SCR_006415) | access service resource, core facility, service resource |
Core facility that provides the following services: 7500 fast Q-PCR service, MALDI MS service, Agilent 2100 bioanalyzer service, NanoDrop 1000 service. |
real-time pcr, mass spectrometry assay, dna sequencing, spectrophotometry, rna quality analysis, dna quality analysis |
is listed by: Eagle I has parent organization: Dartmouth College; New Hampshire; USA |
nlx_156243 | http://cancer.dartmouth.edu/molecular_biology/shared_instruments.html | SCR_006415 | SciCrunch Registry | 2026-10-24 12:52:10 | 0 | |||||||||
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BWH Cell Culture and Microscopy Core Resource Report Resource Website |
BWH Cell Culture and Microscopy Core (RRID:SCR_005562) | access service resource, core facility, service resource |
Core facility that provides the following services: Cell immortalization through retroviral or lentiviral vectors service, Microscopy training, User-based microscopy service. |
targeted homologous recombination, microscopy | is listed by: Eagle I | nlx_156138 | http://rheinwaldlab.bwh.harvard.edu/core.html | SCR_005562 | SciCrunch Registry | 2026-10-24 12:52:08 | 0 | |||||||||
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High-dose Ursodiol Therapy of Primary Sclerosing Cholangitis Resource Report Resource Website |
High-dose Ursodiol Therapy of Primary Sclerosing Cholangitis (RRID:SCR_006772) | HUSC | clinical trial, resource | Multi-center, placebo-controlled trial of ursodiol in primary sclerosing cholangitis (PSC). A total of 150 patients with previously untreated PSC without cirrhosis were randomly assigned to receive high doses of ursodiol (20-25 mg/kg/day) or placebo for two years. Patients underwent medical evaluation, endoscopic retrograde cholangiography, and liver biopsy before randomization and again at two-year intervals. The endpoints of therapy were progression of hepatic fibrosis, liver decompensation, liver transplantation, or death. The treatment phase of the study was stopped for futility in June 2008; however, patients continue to be followed. Ongoing mechanistic studies are underway. | treatment, placebo, ursodeoxycholic acid, intervention, randomized, adult human, male, female |
is listed by: NIDDK Information Network (dkNET) is listed by: NIDDK Research Resources has parent organization: ClinicalTrials.gov |
Primary Sclerosing Cholangitis | NIDDK | PMID:19585548 | nlx_152836 | SCR_006772 | SciCrunch Registry | Trial of High-dose Urso in Primary Sclerosing Cholangitis, High-dose Ursodiol Therapy of Primary Sclerosing Cholangitis (HUSC), Multicentered Randomized Trial of High-dose Urso in Primary Sclerosing Cholangitis | 2026-10-24 12:52:09 | 0 | |||||
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University of New South Wales; New South Wales; Australia Resource Report Resource Website 50+ mentions |
University of New South Wales; New South Wales; Australia (RRID:SCR_006094) | UNSW | institution, university |
is parent organization of: UNSW Embryology is parent organization of: University of New South Wales School of Psychology |
SCR_006094 | SciCrunch Registry | UNSW | 2026-10-24 12:52:10 | 57 | |||||||||||
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Efficacy and Mechanisms of Glutamine Dipeptide in the Surgical Intensive Care Unit Resource Report Resource Website |
Efficacy and Mechanisms of Glutamine Dipeptide in the Surgical Intensive Care Unit (RRID:SCR_006806) | GLND | clinical trial, resource | Multi-center, double-blind, placebo-controlled, intent-to-treat Phase III trial, designed to determine the effect of parenteral glutamine (GLN) dipeptide on important clinical outcomes in patients requiring surgical intensive care unit (SICU) care and parenteral nutrition (PN) after cardiac, vascular, or intestinal surgery. Patients who required PN and SICU care will receive either standard glutamine (GLN)-free PN (STD-PN) or isocaloric, isonitrogenous alanyl-glutamine dipeptide (AG)-PN until enteral feedings are established. The study will determine whether AG-PN decreases hospital mortality, nosocomial infection and other important indices of morbidity and will obtain mechanistically relevant observational data in the subjects on whether AG-PN a) increases serial blood concentrations of glutathione (GSH), heat shock proteins (HSP)-70 and -27, and glutamine; b) decreases the serum presence of the bacterial products flagellin and lipopolysaccharide (LPS) and the adaptive immune response to these mediators; and c) improves key indices of innate and adaptive immunity. | parenteral nutrition, glutamine, glutamine dipeptide, clinical, outcome, adult human, mortality, nosocomial infection, immune cell function, hospital morbidity, morbidity, intensive care |
is listed by: ClinicalTrials.gov is listed by: NIDDK Information Network (dkNET) is listed by: NIDDK Research Resources has parent organization: Emory University; Georgia; USA |
Critical illness | NIDDK U01DK069322 | PMID:18596310 | nlx_152823 | http://www.sph.emory.edu/GLND | SCR_006806 | SciCrunch Registry | Phase III Study on the Efficacy of Glutamine Dipeptide-Supplemented Parenteral Nutrition in Surgical ICU Patients, Efficacy and Mechanisms of GLN Dipeptide in the SICU, Efficacy and Mechanisms of GLN Dipeptide in the SICU (GLND), GLND trial | 2026-10-24 12:52:11 | 0 | ||||
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Diabetes Control and Complications Trial Resource Report Resource Website |
Diabetes Control and Complications Trial (RRID:SCR_006805) | DCCT | clinical trial, data or information resource, database, resource | Clinical study that showed that keeping blood glucose levels as close to normal as possible slows the onset and progression of eye, kidney, and nerve diseases caused by diabetes. EDIC is a follow-up study of people who participated in DCCT. The DCCT involved 1,441 volunteers, ages 13 to 39, with type 1 diabetes and 29 medical centers in the United States and Canada. Volunteers had to have had diabetes for at least 1 year but no longer than 15 years. They also were required to have no, or only early signs of, diabetic eye disease. The study compared the effects of standard control of blood glucose versus intensive control on the complications of diabetes. Intensive control meant keeping hemoglobin A1C levels as close as possible to the normal value of 6 percent or less. The A1C blood test reflects a person''''s average blood glucose over the last 2 to 3 months. Volunteers were randomly assigned to each treatment group. DCCT Study Findings * Intensive blood glucose control reduces risk of ** eye disease: 76% reduced risk ** kidney disease: 50% reduced risk ** nerve disease: 60% reduced risk When the DCCT ended, researchers continued to study more than 90 percent of participants. The follow-up study, called Epidemiology of Diabetes Interventions and Complications (EDIC), is assessing the incidence and predictors of cardiovascular disease events such as heart attack, stroke, or needed heart surgery, as well as diabetic complications related to the eye, kidney, and nerves. The EDIC study is also examining the impact of intensive control versus standard control on quality of life. Another objective is to look at the cost-effectiveness of intensive control. EDIC Study Findings * Intensive blood glucose control reduces risk of ** any cardiovascular disease event: 42% reduced risk ** nonfatal heart attack, stroke, or death from cardiovascular causes: 57% reduced risk | blood glucose, adolescent, young human, middle adult human, longitudinal, eye disease, kidney disease, nerve disease, cardiovascular disease, heart attack, stroke, blood pressure, blood lipid, complication |
is listed by: ClinicalTrials.gov is listed by: NIDDK Information Network (dkNET) is listed by: NIDDK Central Repository is related to: Epidemiology of Diabetes Interventions and Complications is related to: Epidemiology of Diabetes Interventions and Complications is related to: NIDDK Information Network (dkNET) has parent organization: National Diabetes Information Clearinghouse |
Type 1 diabetes, Diabetes | NIDDK | nlx_152798 | SCR_006805 | SciCrunch Registry | DCCT and EDIC: The Diabetes Control and Complications Trial and Follow-up Study | 2026-10-24 12:52:09 | 0 | ||||||
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National Biomedical Electron Paramagnetic Resonance Center Resource Report Resource Website |
National Biomedical Electron Paramagnetic Resonance Center (RRID:SCR_006601) | National Biomedical EPR Center, EPR Center | biomedical technology research center, training resource | Biomedical technology research center focusing on technological innovation and application of new techniques to biological problems. The main areas of research are free radicals, spin labeling, metal complexes, and metallo proteins. Spectrometers are available for S-, X-, L-, Q- , and W-band EPR, many with ENDOR, ELDOR, saturation-transfer, saturation-recovery, and multiquantum capabilities. * Development of multiquantum Q- and W-band spectrometers, including multiquantum ELDOR, development of time-locked sub-sampling (TLSS) for broadband detection of periodically modulated signals * Development of loop-gap resonators using finite element modeling of Maxwell''s equations * Application of multifrequency (1 to 100 GHz) electron paramagnetic resonance (EPR) to characterize paramagnetic centers * Study of relaxation processes using multifrequency pulse saturation recovery * Use of nitroxide radical spin labels to measure translational and rotational diffusion in biological systems, site-directed spin labeling (SDSL), and use of EPR for the detection of nitric oxide and oxy radicals | spectrometer, electron paramagnetic resonance, free radical, spin labeling, metal complex, metallo protein | has parent organization: Medical College of Wisconsin; Wisconsin; USA | NIBIB | nlx_152655 | SCR_006601 | SciCrunch Registry | National Biomedical EPR | 2026-10-24 12:52:09 | 0 | |||||||
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PathXL TMA Resource Report Resource Website |
PathXL TMA (RRID:SCR_005596) | PathXL TMA | commercial organization, software resource | Tissue microarray (TMA) Software used for Biomarker Discovery that allows TMA experiments to be performed anytime, anywhere, reducing administrative costs and time. It is designed to support TMA scoring workflow and allows configuration of experiments in minutes. Access and view clinical metadata, the TMA core, scoring criteria and the TMA map all on a single interface. | tissue microarray, pathology, clinical | is listed by: OMICtools | OMICS_00817 | SCR_005596 | SciCrunch Registry | 2026-10-24 12:52:08 | 0 | |||||||||
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Frequent Hemodialysis Network Nocturnal Trial Resource Report Resource Website |
Frequent Hemodialysis Network Nocturnal Trial (RRID:SCR_007014) | FHN Nocturnal Trial | clinical trial, resource | Randomized controlled clinical trial where subjects will be randomized to conventional hemodialysis delivered three days per week home arm or to the six times per week nocturnal home hemodialysis arm which will follow any dialysis prescription provided their prescribed standardized Kt/V is at least 4.0 and treatment time is at least 6.0 hours, six times per week. Subjects were recruited from dialysis units associated with designated Clinical Centers in the U.S. and Canada and followed for 12 months. Primary Outcome Measures: * composite of 12 month mortality and the change over 12 months in left ventricular mass by cine-MRI, * a composite of 12 month mortality and the change over 12 months in the SF-36 RAND physical health composite Secondary Outcome Measures: * cardiovascular structure/funct (change in LV mass over 12 mos), health-related QoL/phys funct (change over 12 mos in PHC), * depression / dis burden (change over 12 mos in Beck Depression Inv.), nutrition (change over 12 mos in serum albumin, cognitive funct (change over 12 mos in TrailMaking Test B), mineral metabolism (change over 12 mos in aveg pre-dialysis serum phosphorus), * clin events (rate of non-access hospital or death * hypertension, anemia | hemodialysis, home, adult human, kidney, kidney disease |
is listed by: ClinicalTrials.gov is related to: Frequent Hemodialysis Network Daily Trial is related to: NIDDK Information Network (dkNET) has parent organization: NIDDK - National Institute of Diabetes and Digestive and Kidney Diseases |
End Stage Renal Disease, Hemodialysis | NIDDK | PMID:21775973 PMID:17164834 PMID:17699439 |
nlx_152829 | SCR_007014 | SciCrunch Registry | Frequent Hemodialysis Network (FHN) Nocturnal Trial, Frequent Hemodialysis Network: Nocturnal Trial | 2026-10-24 12:52:11 | 0 | |||||
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BCILAB Resource Report Resource Website 10+ mentions |
BCILAB (RRID:SCR_007013) | BCILAB | software resource, source code | Open Source MATLAB toolbox and EEGLAB plugin for the design, prototyping, testing, experimentation with, and evaluation of Brain-Computer Interfaces (BCIs), and other systems in the same computational framework. It facilitates the design and development of new methods for cognitive state estimation and their use in both offline data analysis and real-time applications. BCILAB includes an easily extensible collection of currently over 100 methods from the literature (covering signal processing, machine learning and BCI-specific methods). Aside from supporting advanced BCI research, a special aim of BCILAB is to facilitate the adoption of machine learning and advanced statistical modeling for functional neuroimaging purposes in tandem with the EEGLAB platform. The toolbox offers multiple different interfaces which link to the same backend functionality, including a GUI, scripting support (MATLAB-based), APIs for real-time processing, and a variety of extension component interfaces. MATLAB programming is not strictly necessary, as most BCILAB features can be accessed from the GUI, although it is required for batch scripting and custom extensions. The strength of MATLAB-based software lies in its resources for leading-edge scientific computing, as well as in the good support for rapid prototyping, but BCI systems developed in it can be used for real-time out-of-lab experimentation, and can in principle be deployed without the need for a MATLAB license. However, due to the complexity and overhead of the MATLAB environment, the system is best used as a research platform, and not as a product development environment -- end-user software is ideally re-implemented in a compiled language, after a suitable approach has been identified and extensively tested. The process of identifying and testing an approach involves more than just computation, but also data exploration and investigation - an area which is helped by the deep integration with the EEGLAB platform. In the future, this integration will be further strengthened, bringing rich statistical learning and signal processing into routine EEG analysis workflows. The toolbox has been developed by C. Kothe at the Swartz Center, inspired by the preceding PhyPA BCI toolbox created by C. Kothe and T. Zander at the Chair for Human-Machine Systems, Berlin Institute of Technology. | brain-computer interface, discriminant analysis, temporal integration, matlab, eeg, meg, electrocorticography, statistical operation, temporal transformation, signal processing, machine learning |
is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) is related to: EEGLAB is related to: Neural Maestro has parent organization: Swartz Center for Computational Neuroscience |
GNU General Public License | nlx_153810 | http://www.nitrc.org/projects/bcilab | SCR_007013 | SciCrunch Registry | 2026-10-24 12:52:09 | 22 | |||||||
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University of Waterloo; Ontario; Canada Resource Report Resource Website 1+ mentions |
University of Waterloo; Ontario; Canada (RRID:SCR_006166) | Waterloo | institution, university |
is related to: Federated Research Data Repository is parent organization of: Repository of neural and cognitive models is parent organization of: Center for Theoretical Neuroscience; University of Waterloo |
SCR_006166 | SciCrunch Registry | University of Waterloo | 2026-10-24 12:52:08 | 2 | |||||||||||
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University of Texas at Austin; Texas; USA Resource Report Resource Website 1+ mentions |
University of Texas at Austin; Texas; USA (RRID:SCR_005900) | UT Austin | institution, university | A major university |
is related to: LungMap is related to: RobotReviewer has parent organization: University of Texas System; Texas; USA is parent organization of: Academic Seismic Portal at UTIG is parent organization of: FUGOID: a Database for Functional Genomics of Organelle Introns is parent organization of: Aptamer Database - The Ellington Lab is parent organization of: Poldracklab Portal is parent organization of: Synapse Web Reconstruct is parent organization of: Cognitive Atlas is parent organization of: Synapse Web is parent organization of: DigiMorph is parent organization of: Amino Acid-Nucleotide Interaction Database is parent organization of: VolumeRover is parent organization of: Phenologs is parent organization of: NeuroSynth is parent organization of: Open Proteomics Database is parent organization of: University of Texas at Austin College of Pharmacy is parent organization of: University of Texas at Austin Labs and Facilities is parent organization of: Texas Advanced Computing Center is parent organization of: Aging Status and Sense of Control (ASOC) is parent organization of: HumanNet is parent organization of: Culture Collection of Algae at the University of Texas is parent organization of: CiteAs is parent organization of: University of Texas at Austin Genomic Sequencing and Analysis Core Facility is parent organization of: University of Texas at Austin Biological Mass Spectrometry Proteomics Core Facility is parent organization of: University of Texas at Austin Microscopy and Flow Cytometry Core Facility is parent organization of: University of Texas at Austin Biomedical Imaging Center Core Facility is parent organization of: University of Texas at Austin Mouse Genetic Engineering Core Facility is parent organization of: University of Texas at Austin Biomedical Research Computing Core Facility is parent organization of: University of Texas at Austin Computational Biology and Bioinformatics Core Facility is parent organization of: University of Texas at Austin Cryo Electron Microscopy Core Facility is parent organization of: University of Texas at Austin Advanced Protein Therapeutics Core Facility is parent organization of: SoftCite is parent organization of: University of Texas at Austin Shared Instrumentation Facility |
grid.89336.37 | https://ror.org/00hj54h04 | SCR_005900 | SciCrunch Registry | University of Texas at Austin | 2026-10-24 12:52:08 | 8 |
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