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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Integrated Auto-Extracted Annotation Resource Report Resource Website |
Integrated Auto-Extracted Annotation (RRID:SCR_005892) | Integrated AEA, Auto-Extracted Annotation | data or information resource, data set | A virtual database that indexes both BioNOT for negation data, and the Resource Discovery Pipeline: an automated resource discovery and semi-automated type characterization with text-mining scripts that facilitate curation team efforts to discover, integrate and display new content. This virtual database currently indexes the following resources: * BioNOT, http://snake.ims.uwm.edu/bionot/index.php?searchterm=mecp2+autism&submit=Search * Resource Discovery Pipeline, http://lucene1.neuinfo.org/nif_resource/current/ | annotation, negative data |
is used by: NIF Data Federation is related to: BioNOT is related to: NIF Registry Automated Crawl Data is related to: PubMed has parent organization: Integrated |
NIH Blueprint for Neuroscience Research ; NIDA Contract HHSN271200577531C |
PMID:22434839 | Data are licensed by their respective owners. Use and distribution is subject to the Terms of Use by the original resource as well as the, Creative Commons Attribution License | nlx_149462 | http://neuinfo.org/nif/nifgwt.html?query=nlx_149462 | SCR_005892 | SciCrunch Registry | NIF Integrated Automatically Extracted Annotation, NIF Integrated Auto. Extracted Annotation, NIF Integrated Auto-Extracted Annotation, Integrated Automatically Extracted Annotation, Integrated Auto Extracted Annotation, NIF Auto-Extracted Annotation | 2026-10-24 12:52:09 | 0 | ||||
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Type 1 Diabetes Preclinical Testing Program Resource Report Resource Website |
Type 1 Diabetes Preclinical Testing Program (RRID:SCR_006861) | T1D-PTP, NIDDKT1D-PTP | resource, service resource | THIS RESOURCE IS NO LONGER IN SERVICE, documented August 22, 2016. Investigator access is provided to the established facilities and expertise needed to extend, enhance and validate preclinical studies of promising new therapeutics in cases where additional preclinical testing is needed to validate potential therapies under disease-specific conditions and in multiple animal models before therapeutics can enter the Type 1 Diabetes Rapid Access to Intervention Development (T1D-RAID) development pipeline. The T1D-RAID program provides resources for pre-clinical development of drugs, natural products, and biologics that will be tested as new therapeutics in type 1 diabetes clinical trials. The T1D-RAID program is not currently accepting applications. The T1D-PTP program currently supports two contracts, which are separate from each other and from the T1D-RAID NCI contract resources, to assist in preclinical development of therapeutics for T1D: * Agents to be tested for Preclinical Efficacy in Prevention or Reversal of Type 1 Diabetes in Rodent Models. Type 1 Diabetes Preclinical Testing Program (T1D-PTP) (NOT-DK-09-006) * Needs for Preclinical Efficacy Testing of Promising Agents to Prevent or Reverse Diabetic Complications (NOT-DK-09-009) The T1D-RAID and T1D-PTP are programs intended to remove the most common barriers to progress in identification and development of new therapies for Type 1 Diabetes. The common goal of these programs is to support and provide for the preclinical work necessary to obtain proof of principle establishing that a new molecule or novel approach will be a viable candidate for expanded clinical evaluation. | testing, therapeutic, clinical, drug, preclinical, therapy, drug development, high-throughput screening, animal model, formulation, pharmacology, toxicology |
is related to: Type 1 Diabetes - Rapid Access to Intervention Development is related to: NIDDK Information Network (dkNET) has parent organization: NIDDK - National Institute of Diabetes and Digestive and Kidney Diseases |
Type 1 diabetes, Diabetes | NIDDK | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_152741 | SCR_006861 | SciCrunch Registry | Type 1 Diabetes Preclinical Testing Program (T1D-PtP), NIDDKType 1 Diabetes Preclinical Testing Program | 2026-10-24 12:52:10 | 0 | |||||
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Network-based Prediction of Human Tissue-specific Metabolism Resource Report Resource Website 1+ mentions |
Network-based Prediction of Human Tissue-specific Metabolism (RRID:SCR_007392) | data or information resource, data set | THIS RESOURCE IS NO LONGER IN SERVICE, documented August 23, 2016. Network visualizations in which the expression and predicted flux data are projected over the global human network. These network visualizations are accessible through the supplemental website using the publicly available Cytoscape software (Cline, Smoot et al. 2007). Since many high degree nodes exist in the network, special layouts are required to produce network visualizations that are readily interpretable. To this end we produced network visualizations in which hub nodes are repeated multiple times and hence layouts with a small number of edge crossings can be generated. Contains entries for brain compartments and brain pathways. | molecular neuroanatomy resource, brain, pathway, tissue-specific metabolism, human, network-based prediction, cytoscape 2.5, tissue-specific metabolic behavior, network visualization, high degree nodes, hub nodes, currency metabolites, cellular-compartments, cellular compartment, metabolite, cytoplasm, extracellular, lysosome, mitochondrion, nucleus, endoplasmic, peroxisome, metabolic flux |
is related to: Cytoscape has parent organization: Tel Aviv University; Ramat Aviv; Israel |
THIS RESOURCE IS NO LONGER IN SERVICE | nif-0000-00431 | SCR_007392 | SciCrunch Registry | Network-based Prediction of Human Tissue-specific Metabolism | 2026-10-24 12:52:11 | 1 | ||||||||
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University of Siena; Tuscany; Italy Resource Report Resource Website |
University of Siena; Tuscany; Italy (RRID:SCR_008080) | UNISI | institution, university | is parent organization of: Italian Rett Syndrome database | SCR_008080 | SciCrunch Registry | UNISI | 2026-10-24 12:52:10 | 0 | |||||||||||
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University of Pisa; Pisa; Italy Resource Report Resource Website |
University of Pisa; Pisa; Italy (RRID:SCR_006616) | institution, university |
is related to: IMIDIA is related to: EMIF is parent organization of: NEuronMOrphological analysis tool |
SCR_006616 | SciCrunch Registry | Universita di Pisa, Università degli Studi di Pisa, Universita degli Studi di Pisa, University of Pisa, Università di Pisa | 2026-10-24 12:52:09 | 0 | ||||||||||||
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Yeast Resource Center Resource Report Resource Website 1+ mentions |
Yeast Resource Center (RRID:SCR_007942) | YRC | biomedical technology research center, training resource | Biomedical technology research center that (1) exploits the budding yeast Saccharomyces cerevisiae to develop novel technologies for investigating and characterizing protein function and protein structure (2) facilitates research and extension of new technologies through collaboration, and (3) actively disseminates data and technology to the research community. Through collaboration, the YRC freely provides resources and expertise in six core technology areas: Protein Tandem Mass Spectrometry, Protein Sequence-Function Relationships, Quantitative Phenotyping, Protein Structure Prediction and Design, Fluorescence Microscopy, Computational Biology. | systems biology technology center, protein function, protein structure, mass spectrometry, protein, structure prediction, fluorescence microscopy, computational biology, sequence, function, phenotyping | has parent organization: University of Washington; Seattle; USA | NCRR ; NIGMS P41 GM103533 |
nif-0000-03650 | SCR_007942 | SciCrunch Registry | YRC | 2026-10-24 12:52:10 | 6 | |||||||
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Yale School of Medicine; Connecticut; USA Resource Report Resource Website 1+ mentions |
Yale School of Medicine; Connecticut; USA (RRID:SCR_006339) | YSM | institution, university |
has parent organization: Yale University; Connecticut; USA is parent organization of: iFad is parent organization of: YPED is parent organization of: NIDDK Inflammatory Bowel Disease Genetics Consortium is parent organization of: ALFRED is parent organization of: pairedBayes is parent organization of: RNASeqBias is parent organization of: MSClust is parent organization of: pRESTO is parent organization of: Models of SHM Targeting and Substitution is parent organization of: GOArray is parent organization of: Olfactory Receptor DataBase is parent organization of: Yale School of Medicine Pharmacology is parent organization of: Btrim is parent organization of: Yale Pathology Tissue Services is parent organization of: DISCO is parent organization of: Neuroscience Gateway is parent organization of: National Mouse Metabolic Phenotyping Centers is parent organization of: Yale Cooperative Center of Excellence in Hematology is parent organization of: Yale Cooperative Center of Excellence in Hematology Animal Modeling Core is parent organization of: Yale Cooperative Center of Excellence in Hematology Imaging Core is parent organization of: Yale Cooperative Center of Excellence in Hematology Cell Preparation and Analysis Core is parent organization of: George M. O'Brien Kidney Center at Yale Mouse Genetics and Cell Line Core is parent organization of: George M. O'Brien Kidney Center at Yale Human Genetics and Clinical Research Core is parent organization of: George M. O'Brien Kidney Center at Yale Renal Physiology Core is parent organization of: George M. O'Brien Kidney Center at Yale is parent organization of: Yale Liver Center Morphology Core is parent organization of: Yale Liver Center Clinical and Translational Core is parent organization of: Yale Liver Center Cellular and Molecular Physiology Core is parent organization of: Yale Liver Center Administrative Core is parent organization of: Yale Liver Center is parent organization of: Yale School of Medicine Flow Cytometry Core Facility is parent organization of: Yale Keck Mass Spectrometry and Proteomics Resource Core Facility |
SCR_006339 | SciCrunch Registry | Yale School of Medicine, Yale University School of Medicine | 2026-10-24 12:52:09 | 1 | |||||||||||
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Sleep-EDF Database Resource Report Resource Website 1+ mentions |
Sleep-EDF Database (RRID:SCR_006976) | Sleep-EDF Database | data or information resource, data set | Sleep EEG dataset from 8 subjects in European Data Format (EDF) including original recordings and their hypnograms as described in B Kemp, AH Zwinderman, B Tuk, HAC Kamphuisen, JJL Obery��. Analysis of a sleep-dependent neuronal feedback loop: the slow-wave microcontinuity of the EEG. IEEE-BME 47(9):1185-1194 (2000). The recordings were obtained from Caucasian males and females (21 - 35 years old) without any medication; they contain horizontal EOG, FpzCz and PzOz EEG, each sampled at 100 Hz. The sc* recordings also contain the submental-EMG envelope, oro-nasal airflow, rectal body temperature and an event marker, all sampled at 1 Hz. The st* recordings contain submental EMG sampled at 100 Hz and an event marker sampled at 1 Hz. The 4 sc* recordings were obtained in 1989 from ambulatory healthy volunteers during 24 hours in their normal daily life, using a modified cassette tape recorder. The 4 st* recordings were obtained in 1994 from subjects who had mild difficulty falling asleep but were otherwise healthy, during a night in the hospital, using a miniature telemetry system with very good signal quality. | eeg, sleep, male, female, hypnogram, european data format, early adult human, caucasian, recording | has parent organization: PhysioNet | Difficulty falling asleep, Healthy | PMID:11008419 | Acknowledgement requested | nlx_153823 | SCR_006976 | SciCrunch Registry | Sleep Recordings and Hypnograms in European Data Format (EDF), Sleep Recordings and Hypnograms in European Data Format | 2026-10-24 12:52:09 | 1 | |||||
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ALCHEMY Resource Report Resource Website 1+ mentions |
ALCHEMY (RRID:SCR_005761) | ALCHEMY | software resource, source code | ALCHEMY is a genotype calling algorithm for Affymetrix and Illumina products which is not based on clustering methods. Features include explicit handling of reduced heterozygosity due to inbreeding and accurate results with small sample sizes. ALCHEMY is a method for automated calling of diploid genotypes from raw intensity data produced by various high-throughput multiplexed SNP genotyping methods. It has been developed for and tested on Affymetrix GeneChip Arrays, Illumina GoldenGate, and Illumina Infinium based assays. Primary motivations for ALCHEMY''s development was the lack of available genotype calling methods which can perform well in the absence of heterozygous samples (due to panels of inbred lines being genotyped) or provide accurate calls with small sample batches. ALCHEMY differs from other genotype calling methods in that genotype inference is based on a parametric Bayesian model of the raw intensity data rather than a generalized clustering approach and the model incorporates population genetic principles such as Hardy-Weinberg equilibrium adjusted for inbreeding levels. ALCHEMY can simultaneously estimate individual sample inbreeding coefficients from the data and use them to improve statistical inference of diploid genotypes at individual SNPs. The main documentation for ALCHEMY is maintained on the sourceforge-hosted MediaWiki system. Features * Population genetic model based SNP genotype calling * Simultaneous estimation of per-sample inbreeding coefficients, allele frequencies, and genotypes * Bayesian model provides posterior probabilities of genotype correctness as quality measures * Growing number of scripts and supporting programs for validation of genotypes against control data and output reformating needs * Multithreaded program for parallel execution on multi-CPU/core systems * Non-clustering based methods can handle small sample sets for empirical optimization of sample preparation techniques and accurate calling of SNPs missing genotype classes ALCHEMY is written in C and developed on the GNU/Linux platform. It should compile on any current GNU/Linux distribution with the development packages for the GNU Scientific Library (gsl) and other development packages for standard system libraries. It may also compile and run on Mac OS X if gsl is installed. | diploid, genotype, snp, bio.tools |
is listed by: bio.tools is listed by: Debian has parent organization: SourceForge has parent organization: Cornell University; New York; USA |
NSF 0606461 | PMID:20926420 | GNU General Public License | biotools:alchemy, nlx_149227 | https://bio.tools/alchemy | SCR_005761 | SciCrunch Registry | ALCHEMY - An automated population genetic model driven SNP genotype calling method | 2026-10-24 12:52:09 | 5 | ||||
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Functional Dyspepsia Treatment Trial Resource Report Resource Website |
Functional Dyspepsia Treatment Trial (RRID:SCR_006691) | FDTT | clinical trial, resource | Multi-center, randomized, placebo-controlled trial evaluating the tricyclic antidepressant, amitriptyline and the selective serotonin reuptake inhibitor (SSRI), escitalopram to placebo in patients with functional dyspepsia. The purpose of this study is to determine whether amitriptyline and escitalopram are more efficacious than placebo in relief of the symptoms of functional dyspepsia, adjusting for psychological and psychiatric co-morbidities. | antidepressant, amitriptyline, selective serotonin reuptake inhibitor, escitalopram, placebo |
is listed by: NIDDK Information Network (dkNET) is listed by: NIDDK Research Resources has parent organization: ClinicalTrials.gov |
Functional dyspepsia | NIDDK | PMID:22343090 | nlx_152830 | SCR_006691 | SciCrunch Registry | Antidepressant Therapy for Functional Dyspepsia, Functional Dyspepsia Treatment Trial (FDTT) | 2026-10-24 12:52:10 | 0 | |||||
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English Longitudinal Study of Ageing Resource Report Resource Website 10+ mentions |
English Longitudinal Study of Ageing (RRID:SCR_006727) | ELSA | data or information resource, data set | An interdisciplinary data resource on health, economic position and quality of life as people age. Longitudinal multidisciplinary data from a representative sample of the English population aged 50 and older have been collected. Both objective and subjective data are collected relating to health and disability, biological markers of disease, economic circumstance, social participation, networks and well-being. Participants are surveyed every two years to see how people''s health, economic and social circumstances may change over time. One of the study''s aims is to determine the relationships between functioning and health, social networks, resources and economic position as people plan for, move into and progress beyond retirement. It is patterned after the Health and Retirement Study, a similar study based in the United States. ELSA''s method of data collection includes face-to-face interview with respondents aged 50+; self-completion; and clinical, physical, and performance measurements (e.g., timed walk). Wave 2 added questions about quality of health care, literacy, and household consumption, and a visit by a nurse to obtain anthropometric, blood pressure, and lung function measurements, as well as saliva and blood samples, and to record results from tests of balance and muscle strength. Another new aspect of Wave 2 is the ''Exit Interview'' carried out with proxy informants to collect data about respondents who have died since Wave 1. This interview includes questions about the respondents'' physical and psychological health, the care and support they received, their memory and mood in the last year of their life, and details of what has happened to their finances after their death. Wave 3 data added questions related to mortgages and pensions. The intention is to conduct interviews every 2 years, and to have a nurse visit every 4 years. It also is envisioned that the ELSA data will ultimately be linked to available administrative data, such as death registry data, a cancer register, NHS hospital episodes data, National Insurance contributions, benefits, and tax credit records. The survey data are designed to be used for the investigation of a broad set of topics relevant to understanding the aging process. These include: * health trajectories, disability and healthy life expectancy; * the determinants of economic position in older age; * the links between economic position, physical health, cognition and mental health; * the nature and timing of retirement and post-retirement labour market activity; * household and family structure, social networks and social supports; * patterns, determinants and consequences of social, civic and cultural participation; * predictors of well-being. Current funding for ELSA will extend the panel to 12 years of study, giving significant potential for longitudinal analyses to examine causal processes. * Dates of Study: 2002-2007 * Study Features: Longitudinal, International, Anthropometric Measures * Sample Size: ** 2000-2003 (Wave 1): 12,100 ** 2004-2005 (Wave 2): 9,433 ** 2006-2007 (Wave 3): 9,771 ** 2008-2009 (Wave 4): underway Links * Economic and Social Data Service (ESDS): http://www.esds.ac.uk/longitudinal/about/overview.asp * ICPSR: http://www.icpsr.umich.edu/icpsrweb/ICPSR/studies/00139#scope-of-study | middle adult human, late adult human, adult human, biological marker, direct assessment, physical impairment, interview, clinical, physical, performance, health care, literacy, household consumption, anthropometric, blood pressure, lung function, measurement, saliva, blood, balance, muscle strength, psychological health, care, support, memory, mood, longitudinal, international, health, disability, economic circumstance, social participation, well-being, behavior, family life, health care, health status, household income, income, marriage, retirement, social network |
is listed by: Inter-university Consortium for Political and Social Research (ICPSR) has parent organization: University College London; London; United Kingdom |
Aging | NIA ; UK Department of Health ; UK Department of Social Security ; other UK government departments |
Public for the first 3 waves through the University of Essex Economic and Social Data Service (ESDS) website. Greater restrictions may apply for researchers seeking to access more sensitive data (e.g., Geographical classificatory variables and DNA). | nlx_151823 | SCR_006727 | SciCrunch Registry | English Longitudinal Study of Ageing (ELSA), ELSA - English Longitudinal Study of Ageing, English Longitudinal Study of Aging | 2026-10-24 12:52:10 | 16 | |||||
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University of Salerno; Salerno; Italy Resource Report Resource Website |
University of Salerno; Salerno; Italy (RRID:SCR_007853) | UNISA | institution, university | is parent organization of: University of Salerno Laboratory of Molecular Medicine and Genomics | SCR_007853 | SciCrunch Registry | University of Salerno, Universita degli Studi di Salerno, Università degli Studi di Salerno | 2026-10-24 12:52:10 | 0 | |||||||||||
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Florida State University Program in Neuroscience Resource Report Resource Website |
Florida State University Program in Neuroscience (RRID:SCR_007451) | FSU Neuroscience | graduate program resource, postdoctoral program resource, training resource | The Program in Neuroscience is an independent research and graduate training program at Florida State University, which is a Carnegie Research I university. The Program includes faculty from the departments of Biological Science, Biomedical Science, Mathematics, and Psychology. Its objective is to promote interdisciplinary basic research into neural processes, including the biological mechanisms underlying behavior, and to provide advanced graduate training leading to the Ph.D. degree in Neuroscience. The program maintains specialized research support services and personnel, and provides special courses and symposia on contemporary neuroscience issues. Each semester the program brings to Florida State prominent neuroscientists who give colloquia and hold informal discussions with graduate students and faculty. Neuroscience, the study of brain and nervous system function, encompasses many of the unanswered questions about the nature of humans and other species. It stakes out a territory along the frontier of human knowledge where research can make a real difference to understanding. Traditionally, the primary emphasis of the FSU program has been on sensory processes. This focus is now supplemented by research and instruction in the biophysics and electrophysiology of excitable cells, neurotransmitter and hormone action, neural development and plasticity, circadian rhythms, feeding and regulatory processes, and the genetic bases of neurobiology and behavior. Broad interdisciplinary training is emphasized in the early years so that students develop skills in approaching research problems with multiple levels of analysis, from molecular to behavioral. | has parent organization: Florida State University; Florida; USA | nif-0000-01948 | SCR_007451 | SciCrunch Registry | FSU Program in Neuroscience | 2026-10-24 12:52:10 | 0 | |||||||||
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University of Sciences in Philadelphia; Pennsylvania; USA Resource Report Resource Website |
University of Sciences in Philadelphia; Pennsylvania; USA (RRID:SCR_008023) | institution, university | is parent organization of: University of the Sciences in Philadelphia College of Pharmacy | SCR_008023 | SciCrunch Registry | 2026-10-24 12:52:11 | 0 | |||||||||||||
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Omicsoft Sequence Aligner Resource Report Resource Website 1+ mentions |
Omicsoft Sequence Aligner (RRID:SCR_005270) | OSA | commercial organization, software resource | A fast and accurate alignment tool for RNA-Seq data. | alignment, rna-seq | is listed by: OMICtools | Free for academic use, Commercial use requires license | OMICS_01262 | SCR_005270 | SciCrunch Registry | OSA: a super-fast and accurate alignment tool for RNA-Seq data | 2026-10-24 12:52:08 | 4 | |||||||
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Hunter College; New York; USA Resource Report Resource Website |
Hunter College; New York; USA (RRID:SCR_005707) | Hunter | institution, university |
is related to: Clinical and Translational Science Awards Consortium has parent organization: City University of New York; New York; USA is parent organization of: Hunter NMR Spectroscopy Facility is parent organization of: Hunter Genomic Facility is parent organization of: Hunter Nanoscale Analytical Facility is parent organization of: Hunter Bio-Imaging Facility is parent organization of: Hunter Flow Cytometry Facility is parent organization of: Hunter X-ray Diffraction Facility |
SCR_005707 | SciCrunch Registry | Hunter College | 2026-10-24 12:52:09 | 0 | |||||||||||
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Gene Ontology Browsing Utility (GOBU) Resource Report Resource Website |
Gene Ontology Browsing Utility (GOBU) (RRID:SCR_005662) | GOBU | software resource, source code | Gene Ontology Browsing Utility (GOBU) (GOBU) is a Java-based software program for integrating biological annotation catalogs under an extendable software architecture. Users may interact with the Gene Ontology and user-defined hierarchy data of genes, and then use its plugins to (and not limited to) (1) browse the GO hierarchy with user defined data, (2) browse GO-oriented expression levels in the user data, (3) compute GO enrichment, and/or (4) customize data reporting. A set of classes and utility functions has been established so that a customized program can be made as a plugin or a command-line tool that programmically manipulate the Gene Ontology and specified user data. See the source code repository for examples. Reference Lin WD, Chen YC, Ho JM, Hsiao CD. GOBU: Toward an Integration Interface for Biological Objects. Journal of Information Science and Engineering. 2006 22(1):19-29. Platform: Windows compatible, Mac OS X compatible, Linux compatible, Unix compatible | annotation, gene, browser, computation, visualization, software library, statistical analysis, term enrichment, ontology or annotation browser, ontology or annotation visualization |
is listed by: Gene Ontology Tools is related to: Gene Ontology has parent organization: Academia Sinica; Taipei; Taiwan |
Open unspecified license - Free for academic use | nlx_149098 | SCR_005662 | SciCrunch Registry | Gene Ontology Browsing Utility | 2026-10-24 12:52:09 | 0 | |||||||
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Maryland Genetics of Interstitial Cystitis Resource Report Resource Website |
Maryland Genetics of Interstitial Cystitis (RRID:SCR_006992) | MaGIC | clinical trial, resource | Clinical study that investigated several hundred families with two or more blood relatives with interstitial cystitis in order to understand the molecular genetic basis of this condition. The study sought to find changes in genes that are found far more commonly in family members who have interstitial cystitis than in those who do not have the disease. Identifying these genes should lead to a better understanding of the cause of interstitial cystitis. This is a national study which is conducted by telephone and mail, and in which participants could participate entirely from their home. | male, female, adolescent, adult human, genetics, risk factor, family history, bladder, pain, observational |
is related to: NIDDK Information Network (dkNET) has parent organization: ClinicalTrials.gov has parent organization: University of Maryland School of Medicine; Maryland; USA |
Interstitial cystitis | NIDDK | nlx_152843 | http://icresearch.umaryland.edu/magic.aspx | SCR_006992 | SciCrunch Registry | Maryland Genetics of Interstitial Cystitis (MaGIC) | 2026-10-24 12:52:10 | 0 | |||||
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University of Delaware Skate Genome Project Resource Report Resource Website 1+ mentions |
University of Delaware Skate Genome Project (RRID:SCR_005300) | Skate Genome Project | access service resource, core facility, service resource | Core facility provides a model for collaborative approaches to use specialized resources and expertise in an integrated process. Core builds on the expertise and resources provided by the Bioinformatics Cores of the five northeastern states that form NECC. The Skate Genome Annotation Workshops and Jamborees offer training and opportunities for faculty and students to work with and annotate genome sequences. Workshops include lectures, tutorials and exercises annotating the genome of the little skate, Leucoraja erinacea. | skate, genome, genomics, bioinformatics, sequencing, annotate, sequence, workshop |
has parent organization: North East Cyberinfrastructure Consortium has parent organization: University of Delaware; Delaware; USA is parent organization of: SkateBase |
Available to external user | nlx_144349 | SCR_005300 | SciCrunch Registry | , University of Delaware, Genome Project, Skate | 2026-10-24 12:52:08 | 1 | |||||||
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VelociMapper Resource Report Resource Website |
VelociMapper (RRID:SCR_005262) | VelociMapper???? | commercial organization, software resource | Accelerated alignment tool for mapping data from next-generation DNA sequencing systems. It runs on TimeLogic''s newest FPGA-based DeCypher J-Series Similarity Search Engine Accelerator to provide fast and reliable results that significantly outperform software-only or GPU-accelerated alternatives. | next-generation sequencing | is listed by: OMICtools | Commercial license | OMICS_00696 | SCR_005262 | SciCrunch Registry | VelociMapper - Accelerated Reference Alignment Mapping Tool | 2026-10-24 12:52:08 | 0 |
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The NIDDK Information Network (dkNET) serves the needs of basic and clinical investigators by providing seamless access to large pools of data and research resources relevant to the mission of The National Institute of Diabetes Digestive and Kidney Diseases (NIDDK). dkNET is hosted at University of California San Diego, and is supported by NIH NIDDK grant U24DK097771.
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