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https://www.microbialtec.com/aerobic-cultivation.html

Aerobic cultivation services to culture various microorganisms that can be isolated from readily available sources.

Proper citation: Creative Biogene Aerobic Cultivation Service Resource (RRID:SCR_022099) Copy   

•   Source: SciCrunch Registry
  

https://www.bcgsc.ca/resources/software/ntcard

Software tool for estimating k-mer coverage histogram of genomics data. Streaming algorithm for estimating frequencies of k-mers in genomics datasets.

Proper citation: ntCard (RRID:SCR_022010) Copy   

•   Source: SciCrunch Registry
  

https://www.microbialtec.com/strain-anaerobic-culture.html

Service for anaerobic bacteria cultivation and culture using variety of culture media and culture conditions. Includes collection, strain cultivation, isolation, identification and strain preservation.

Proper citation: Creative Biogene Strain Anaerobic Culture Service Resource (RRID:SCR_022097) Copy   

•   Source: SciCrunch Registry
  

https://plueckthun.bioc.uzh.ch/antibody

AAAAA aims to become the ultimate tool for antibody structural analysis, modelling and engineering.

Proper citation: AHo’s Amazing Atlas of Antibody Anatomy (RRID:SCR_022095) Copy   

•   Source: SciCrunch Registry
  

http://connect-tbi.med.upenn.edu/

Portal for traumatic brain injury data. Common Data Elements (CDEs) and Unique Data Elements (UDEs) for digital neuropathological data and clinical data that will be collected in all CONNECT-TBI center projects. Goal is to establish multi-center, digital neuropathological data and clinical data reporting network with case accrual from each center project. Collected neuropathological data and clinical data available by sharing with center site investigators approved by Administrative Core and by submitting into FITBIR. Central TBI data repository by collecting digital neuropathological data and clinical data from TBI cases and normal controls at each center and posting library of their holdings.

Proper citation: Connect TBI (RRID:SCR_022009) Copy   

•   Source: SciCrunch Registry
  

https://github.com/neuronanalyser/neuronanalyser

Software analysis toolkit for tracking blobs and extracting intensity values from imaging data, designed for use with ratiometric fluorescent sensors.

Proper citation: Neuronanalyser (RRID:SCR_022007) Copy   

•   Source: SciCrunch Registry
  

https://www.plumed.org/

Open source, community developed library that provides range of different methods, which include enhanced sampling algorithms, free energy methods, tools to analyze vast amounts of data produced by molecular dynamics simulations. PLUMED 2 is complete rewrite of the code in object oriented programming language C plus plus. This new version introduces greater flexibility and greater modularity, which both extends its core capabilities and makes it far easier to add new methods and CVs. It also has simpler interface with the MD engines and provides single software library containing both tools and core facilities.

Proper citation: PLUMED 2 (RRID:SCR_021952) Copy   

•   Source: SciCrunch Registry
  

https://cran.r-project.org/package=StAMPP

Software R package for statistical analysis of mixed ploidy populations.Used for calculation of population structure and differentiation based on single nucleotide polymorphism genotype data from populations of any ploidy level, and/or mixed ploidy levels.

Proper citation: StAMPP (RRID:SCR_022022) Copy   

•   Source: SciCrunch Registry
  

https://cran.r-project.org/package=hierfstat

Software R package for estimation and tests of hierarchical F statistics.Used to estimate hierarchical F-statistics from haploid or diploid genetic data with any numbers of levels in hierarchy.Intended for analysis of population structure using genetic markers.

Proper citation: hierfstat (RRID:SCR_022021) Copy   

•   Source: SciCrunch Registry
  

http://cmpg.unibe.ch/software/BayeScan/index.html

Software tool to identify candidate loci under natural selection from genetic data, using differences in allele frequencies between populations.

Proper citation: BayeScan (RRID:SCR_022018) Copy   

•   Source: SciCrunch Registry
  

https://github.com/deeptools/HiCExplorer

Software tool to analyse Hi-C and capture Hi-C data. Command line suite of tools to process, normalize and visualize Hi-C data.

Proper citation: HiCExplorer (RRID:SCR_022111) Copy   

•   Source: SciCrunch Registry
  

https://www.mirion.com/products/genie-2000-basic-spectroscopy-software

Software tool as comprehensive environment for data acquisition, display and analysis of gamma and alpha spectrometry data.

Proper citation: Genie 2000 Basic (RRID:SCR_021933) Copy   

•   Source: SciCrunch Registry
  

https://www.creative-peptides.com/services/cosmetic-peptides.html

Service to synthesize cosmetic peptides. Provides any level of cosmetic peptides, including GMP grades, using advanced peptide synthesis equipment. Used for development and production of cosmetic peptides.

Proper citation: Creative Peptides Cosmetic Peptides Service Resource (RRID:SCR_022108) Copy   

•   Source: SciCrunch Registry
  

https://www.creative-peptides.com/services/backbone-cyclized-peptides.html

Service for chemical synthesis and biosynthesis. Scientists will tailor the most appropriate methods. Every step of peptide synthesis is subject to quality control. Typical delivery specifications include HPLC chromatogram, Mass spec analysis, Synthesis report, Certificate of Analyses.

Proper citation: Creative Peptides Backbone Cyclized Peptides Service Resource (RRID:SCR_022106) Copy   

•   Source: SciCrunch Registry
  

https://www.ibm.com/products/spss-statistics

Software package for statistics. Used to analyze and visualize data. Extensions can be used, Python and R programming language code, to integrate with open source software. Available for Windows and Mac operating systems.Versions that were produced by SPSS Inc. before the IBM acquisition (Versions 18 and earlier) would be given origin or publisher of SPSS Inc. in Chicago. Versions that were released after the acquisition would be given origin or publisher of IBM Corp. in Armonk, NY.

Proper citation: IBM SPSS Statistics (RRID:SCR_016479) Copy   

•   Source: SciCrunch Registry
  

https://www.med-associates.com/product/deluxe-behavioral-test-package/

Operant behavior test package for rat built to meet needs of research studies requiring additional reward and stimulus flexibility. One of Med Associates, Inc. operant conditioning and general behavior product.

Proper citation: Med Associates: Deluxe Behavioral Test Package with Rat Modular Chamber (RRID:SCR_021938) Copy   

•   Source: SciCrunch Registry
  

http://computproteomics.bmb.sdu.dk:8192/app/PolySTest

Web service for statistical testing, data browsing and interactive visualization. Contains multiple statistical tests and new method to incorporate missing values. Robust statistical testing of proteomics data with missing values to improve detection of biologically relevant features., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025.

Proper citation: PolySTest (RRID:SCR_021942) Copy   

•   Source: SciCrunch Registry
  

https://www.sdu.dk/en

University has campuses located in Southern Denmark and on Zealand with main campus in Odense and regional campuses in Slagelse, Kolding, Esbjerg and Sønderborg. University offers joint programes in co-operation with University of Flensburg and University of Kiel.

Proper citation: University of Southern Denmark; Denmark (RRID:SCR_021943) Copy   

•   Source: SciCrunch Registry
  

https://www.alveolelab.com/our-products/leonardo-photopatterning-software/

Photopatterning software to control PRIMO system including UV illumination module, microscope, camera and stage, and to precisely define experimental conditions.Used to design your own micropatterning manipulations.

Proper citation: Alveole Leonardo (RRID:SCR_021940) Copy   

•   Source: SciCrunch Registry
  

https://www.alveolelab.com/our-products/primo-micropatterning/

Photopatterning device for performing micropatterning, microfabrication and hydrogel polymerization.Part of PRIMO system.

Proper citation: Alveole: PRIMO photopatterning module (RRID:SCR_021941) Copy   

•   Source: SciCrunch Registry