Tools   Select Another Resource Report Type

http://www.radiologyresearch.org/HippocampusSegmentation.aspx

This dataset contains T1-weighted MR images of 50 subjects, 40 of whom are patients with temporal lobe epilepsy and 10 are nonepileptic subjects. Hippocampus labels are provided for 25 subjects for training. The users may submit their segmentation outcomes for the remaining 25 testing images to get a table of segmentation metrics.

Proper citation: MRI Dataset for Hippocampus Segmentation (RRID:SCR_009597) Copy   

•   Source: SciCrunch Registry

http://www.nitrc.org/projects/me-icr/

Data set of an AFNI GroupInCorr session for multi-echo independent component regression (ME-ICR) for a cohort of 52 subjects. This dataset provides a high-quality atlas of seed-based functional connectivity with strong statistical conditioning.

Proper citation: Multi-Echo Independent Component Regression Group-Level Connectivity Dataset (RRID:SCR_009508) Copy   

•   Source: SciCrunch Registry

http://fcon_1000.projects.nitrc.org/indi/pro/nki.html

A phenotypically rich neuroimaging sample, consisting of data obtained from individuals between the ages of 4 and 85 years-old. All individuals included in the sample undergo semi-structured diagnostic psychiatric interviews, and complete a battery of psychiatric, cognitive and behavioral assessments in order to provide comprehensive phenotypic information for the purpose of exploring brain / behavior relationships.

Proper citation: NKI/Rockland Sample (RRID:SCR_009435) Copy   

•   Source: SciCrunch Registry

http://www.umassmed.edu/psychiatry/candi/

A series of structural brain images, as well as their anatomic segmentations, demographic and behavioral data and a set of related morphometric resources (static and dynamic atlases) made avaialble from the Child and Adolescent NeuroDevelopment Initiative (CANDI) at UMass Medical School. Schiz Bull 2008 data is now available on NITRC-IR. Please register for access: http://www.nitrc.org/project/request.php?group_id=377

Proper citation: CANDI Neuroimaging Access Point (RRID:SCR_009542) Copy   

•   Source: SciCrunch Registry

http://www.nitrc.org/projects/cmind_2014/

A database that contains brain imaging data collected on 3T MRI scanners from over 200 normally developing healthy children from birth to 18 years. The imaging data stored in the C-MIND database are DTI, HARDI, 3DT1W, 3DT2W, concurrent ASL-BOLD scans during two language tasks (Stories and Sentence-Picture Matching), Resting State fMRI and Baseline ASL scans.

Proper citation: C-MIND Database (RRID:SCR_014094) Copy   

•   Source: SciCrunch Registry

http://www.nitrc.org/projects/imeka_tracto

A diffusion MRI service that handles the processing of diffusion data from raw data to structural connectivity. They provide high angular resolution (HARDI) reconstruction from DTI data with at least 20 gradient directions acquisitions.

Proper citation: Imeka Tractography Service (RRID:SCR_014124) Copy   

•   Source: SciCrunch Registry

http://www.nitrc.org/projects/jhucis_pedatlas/

Anatomical atlases constructed by Computational Anatomy of Johns Hopkins University for analysis of shape vectors. The atlases were generated from segmented hippocampal and amygdala structures in acquired populations of children, adolescents and young adults in neuroimaging studies of major depression disorder (MDD) at Washington University at St Louis.

Proper citation: Atlases of amygdala and hippocampus for pediatric populations (RRID:SCR_014085) Copy   

•   Source: SciCrunch Registry

http://www.nitrc.org/projects/crl_fetal_atlas

An atlas of of the fetal brain from MRI of normal fetuses scanned prenatally generated using a mathematical framework. The atlas shows the inter-subject anatomic variability of the fetal brain over the fetal brain growth period and is currently available between 27 weeks gestational age to 35 weeks. It has been constructed following an unbiased minimum distance template estimation approach which utilizes symmetric diffeomorphic deformation and the cross-correlation (CC) similarity metric integrated with kernel regression in age.

Proper citation: CRL Unbiased and Deformable Spatiotemporal Atlas of the Fetal Brain (RRID:SCR_014176) Copy   

•   Source: SciCrunch Registry

http://www.nitrc.org/projects/brainarteries/

Stereotactic atlases with probabilistic values describing the location of the main cerebral arteries. The data collected are from the COBRA study as described in "COBRA: A prospective multimodal imaging study of dopamine, brain structure and function, and cognition" by Nevalainen et al.

Proper citation: Umea Brain Arteries (RRID:SCR_014752) Copy   

•   Source: SciCrunch Registry

http://www.nitrc.org/projects/whs-sd-atlas/

Open access volumetric atlas of anatomical delineations of rat brain based on structural contrast in isotropic magnetic resonance and diffusion tensor images acquired ex vivo from 80 day old male Sprague Dawley rat at Duke Center for In Vivo Microscopy. Spatial reference is provided by Waxholm Space coordinate system. Location of bregma and lambda are identified as anchors towards stereotaxic space. Application areas include localization of signal in non structural images. Atlas, MRI and DTI volumes, and diffusion tensor data are shared in NIfTI format.

Proper citation: Waxholm Space Atlas of the Sprague Dawley Rat Brain (RRID:SCR_017124) Copy   

•   Source: SciCrunch Registry

http://www.nitrc.org/projects/reliability/

Data collected from subjects scanned 3 times (V1, V2, V3), with V1 and V2 on a scanner, V3 on another scanner in another site. Resting state blood oxygenation level dependent functional MRI (BOLD fMRI), pseudo continuous arterial spin labeling (pCASL), and high resolution 3D T1 imaging were performed under eyes open (EO) and eyes closed (EC) conditions.

Proper citation: Intra- and inter-scanner reliability of RS-fMRI BOLD and ASL with eyes closed vs. eyes open (RRID:SCR_016935) Copy   

•   Source: SciCrunch Registry

http://www.nitrc.org/projects/miitra/

Atlas for studies of older adult brain. Includes T1-weighted template of older adult brain and tissue probability maps. Exhibits high image sharpness, provides higher inter-subject spatial normalization accuracy compared to other standardized templates and similar normalization accuracy to well-constructed study-specific templates.

Proper citation: MIITRA atlas (RRID:SCR_017566) Copy   

•   Source: SciCrunch Registry

http://www.nitrc.org/projects/onprc18_atlas/

Atlas includes co-registered templates constructed from MR images frequently used to characterize macroscopic brain structure T2/SPACE and T1/MP-RAGE, and diffusion tensor imaging template.

Proper citation: ONPRC18 Multimodal MRI Atlas (RRID:SCR_019073) Copy   

•   Source: SciCrunch Registry

http://www.nitrc.org/projects/dicomuploadgui/

A Java tool that takes an unorganized collection of DICOM scans, sorts and categorizes them according to user-customizable rules, gathers metadata about the scans, and saves out this information to help facilitate data uploads. Batch pr

Proper citation: DICOM UploadGUI (RRID:SCR_009458) Copy   

•   Source: SciCrunch Registry

http://www.nitrc.org/projects/createdwiatlas/

This package is a set of three slicer modules which together are able to compute a DWI Atlas given a set of DWI''s. The modules included are: # A Groupwise Registration module -> compute''s a deformation field for each DWI, using, for example, FA maps as input # Warp DWI module -> used to warp each DWI using the deformation from (1) # DWI Averager -> used to average the set of warped DWI''s producing the final DWI Atlas

Proper citation: Create DWI Atlas (RRID:SCR_009455) Copy   

•   Source: SciCrunch Registry

http://fmripower.org

An easy to use matlab-based graphical user interface that calculates power for future studies based on older analyses or pilot data.

Proper citation: FMRIpower (RRID:SCR_009576) Copy   

•   Source: SciCrunch Registry

http://www.nitrc.org/projects/camino-trackvis/

Software package that allows interoperability between CAMINO and TRACKVIS. CAMINO is a leading software package in DTI processing. The package is from University of College London. TRACKVIS is a tract visualizing utility with capability of visualizing up to and over a million white matter tracts seamlessly. The package is from Massachusetts General Hospital. With increasing efforts on brain connectivity analyses it becomes important to have tools that can allow increased interoperability among different tractography tools. The tools in this package allow conversion of tracts from one format to another in a very effective way with ability to handle over a million tracts.

Proper citation: CAMINO-TRACKVIS (RRID:SCR_009450) Copy   

•   Source: SciCrunch Registry

http://www.ant-neuro.com/products/eeprobe

A complete software package for the study of event-related brain activity with high-resolution EEG/MEG. This package has been designed to suit the high standards of neuroscience research. The software has been developed originally at the Max Planck Institute for Cognitive Neuroscience in Leipzig, Germany, and is available for other institutions through ANT Neuro B.V., The Netherlands, enhanced with the EEProbe Databrowser. ERP investigations, both in psychophysiology research and clinical applications require a multitude of processing steps. Analysis of large data sets is made efficient through advanced scripting possibilities. All different aspects of data handling are efficiently available in the EEProbe Databrowser. Alternatively, external data can be imported from a multitude of formats. Processing in EEProbe makes use of open file formats (see LIBEEP) and is designed to integrate with ASA for advanced source analysis. EEProbe is available for Linux and Mac OS X.

Proper citation: EEProbe (RRID:SCR_009570) Copy   

•   Source: SciCrunch Registry

http://www.pstnet.com/software.cfm?ID=101

Software designed to optimize E-Prime experiments for fMRI research. EEfMRI allows you to synchronize the start of your experiment with the first scanner trigger pulse along with several valuable features to enhance the control you have over your experiment. Implementing EEfMRI into your current experiments is achieved by simply dragging and dropping the correct EEfMRI package calls into the E-Prime experiment in the appropriate places. EEfMRI is designed to integrate with other PST hardware and software to increase usability for researchers while maintaining the millisecond accuracy of E-Prime.

Proper citation: E-Prime Extensions for fMRI (RRID:SCR_009568) Copy   

•   Source: SciCrunch Registry

http://www.nitrc.org/projects/cppi_toolbox/

A Matlab toolbox that allows computation of task-related functional connectivity between multiple pairs of regions. Task-related functional connectivity is computed using the correlational psychophysiological interaction (cPPI) methodology described in Fornito et al. (2012) PNAS, 109: 12788-12793. The toolbox assumes that first-level design matrices have been specified and estimated using SPM5 or later. It takes as input these design matrices as well as user-extracted regional time courses and returns a matrix of pair-wise, task-related functional connectivity for each participant. The method is scalable to large networks comprising hundreds of regions and is well-suited to graph theoretic analyses and functional connectomics. One modifiable script, cPPI_master.m, can be used to run the analysis for an entire sample of participants.

Proper citation: cPPI Toolbox for fMRI (RRID:SCR_009518) Copy   

•   Source: SciCrunch Registry