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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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PhotometryBox Resource Report Resource Website |
PhotometryBox (RRID:SCR_021571) | data or information resource, instrument resource, portal, project portal | Portal provides open source control system for in vivo fluorescence measurements from deep brain structures developed by University of California, San Francisco scientists. Microcontroller based solution for controlling optical components in intracranial photometry system and processing resulting signal. | Instrument, fluorescence measurements, deep brain structures, optical fibers, intracranial photometry system, OpenBehavior |
is listed by: OpenBehavior has parent organization: University of California at San Francisco; California; USA |
DOI:10.1016/j.jneumeth.2018.10.022 | Free, Freely available | SCR_021571 | SciCrunch Registry | 2026-10-17 01:30:47 | 0 | |||||||||
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Hybrid-drive combining Optogenetics, Pharmacology, and Electrophysiology project Resource Report Resource Website |
Hybrid-drive combining Optogenetics, Pharmacology, and Electrophysiology project (RRID:SCR_021572) | HOPE | data or information resource, instrument resource, portal, project portal | Portal provides brain implant developed by MIT scientists. Implant carries 16 movable tetrodes along with two optic fibers or two injection cannulas. Designed with help of 3D CAD software, allowing modifications for various experimental needs, such as targeting different brain regions and use in other animal species (e.g., rats and non-human primates). Implant can be designed to shape of skull of individual monkeys based on pre-implantation magnetic resonance imaging, thus optimizing fit with skull surface and making recording from deep brain regions more reliable. | Instrument, neural implant, brain implant, manipulate neuronal activity, OpenBehavior |
is listed by: OpenBehavior is related to: Hybrid-drive combining Optogenetics, Pharmacology, and Electrophysiology has parent organization: Massachusetts Institute of Technology; Massachusetts; USA; |
DOI:10.3389/fncir.2018.00041 | Free, Freely available | SCR_021572 | SciCrunch Registry | Pharmacology, and Electrophysiology, Hybrid-drive combining Optogenetics, Hybrid drive combining Optogenetics | 2026-10-17 01:32:05 | 0 | |||||||
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CerebraLux Resource Report Resource Website |
CerebraLux (RRID:SCR_021570) | data or information resource, instrument resource, portal, project portal | Portal provides low cost, open source, wireless probe for optogenetic stimulation. This wireless system for optogenetic stimulation was developed by UCLA scientists. Device consists of two parts. Optical component is mounted on head permanently, whereas electronic component is removable and is applied for each experiment. Device is controlled via custom GUI (built with the TkInter Python 2.7 library) which sends pulses to device via Arduino Uno. | Instrument, optogenetic stimulation, wireless system, OpenBehavior |
is listed by: OpenBehavior has parent organization: University of California at Los Angeles; California; USA |
DOI:10.1117/1.nph.4.4.045001 | Free, Freely available | SCR_021570 | SciCrunch Registry | 2026-10-17 01:31:25 | 0 | |||||||||
|
Nose Poke Device Resource Report Resource Website |
Nose Poke Device (RRID:SCR_021568) | data or information resource, instrument resource, portal, project portal | Portal provides arduino based, 3D-printed nose poke device for rats. Includes set of instructions on how to build this device using arduino, some 3D printed parts and some off-the-shelf electronic components. | Instrument, nose poke device, device for rats, arduino, 3D printed parts, electronic components, OpenBehavior |
is listed by: OpenBehavior is related to: poke device arduino |
Free, Freely available | SCR_021568 | SciCrunch Registry | 2026-10-17 01:30:57 | 0 | ||||||||||
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FreemoVR Resource Report Resource Website |
FreemoVR (RRID:SCR_021601) | software resource | Software tool as virtual reality engine built on ROS and OpenSceneGraph.Perspective correct Virtual Reality for freely moving animals engine. Used for multicomputer realtime tracking and display with goal of being useful for scientific studies of vision and behavior.Part of FreemoVR system. | Virtual reality engine, ROS, OpenSceneGraph, OpenBehavior |
is listed by: OpenBehavior is related to: FreemoVR project |
DOI:10.1038/nmeth.4399 | Free, Available for download, Freely Available | https://edspace.american.edu/openbehavior/project/freemovr/ | SCR_021601 | SciCrunch Registry | freemovr_engine | 2026-10-17 01:30:49 | 0 | |||||||
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Teensy-Based Interface Resource Report Resource Website |
Teensy-Based Interface (RRID:SCR_021602) | data acquisition software, data processing software, software application, software resource | Teensy microcontroller based interface for optical imaging camera control during behavioral experiments. | Camera control, Teensy 3.2, Teensy microcontroller based interface, sCMOS camera control, OpenBehavior |
is listed by: OpenBehavior is related to: Teensy-Based Interface project |
DOI:10.1016/j.jneumeth.2019.03.019 | Free, Available for download, Freely Available | https://edspace.american.edu/openbehavior/project/teensy-based-interface/ | SCR_021602 | SciCrunch Registry | 2026-10-17 01:32:05 | 0 | ||||||||
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Pearce Lab Syringe Pump project Resource Report Resource Website |
Pearce Lab Syringe Pump project (RRID:SCR_021566) | data or information resource, instrument resource, portal, project portal | Open source syringe pump apparatus developed by scientists from Michigan Technological University. Syringe pump is designed using freely available open source computer aided design (CAD) software and manufactured using open source RepRap 3-D printer and readily available parts. | Instrument, syringe pump apparatus, OpenBehavior |
is listed by: OpenBehavior is related to: linear actuator has parent organization: Michigan Technological University; Houghton; USA |
DOI:10.1371/journal.pone.0107216 | Free, Freely available | SCR_021566 | SciCrunch Registry | Pearce Lab Syringe Pump | 2026-10-17 01:30:47 | 0 | ||||||||
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Modular Automated Platform for Large Scale Experiments Resource Report Resource Website |
Modular Automated Platform for Large Scale Experiments (RRID:SCR_021600) | software resource | Software tool to automate various fly handling tasks.Control software for Drosophila handling robot MAPLE. | Control Drosophila handling robot MAPLE, FlySorter fly manipulation platform control, OpenBehavior |
is listed by: OpenBehavior is related to: Modular Automated Platform for Large Scale Experiments project |
DOI:10.1101/239459 | Free, Available for download, Freely Available | https://edspace.american.edu/openbehavior/project/maple/ | SCR_021600 | SciCrunch Registry | MAPLEControlSoftware, MAPLE v2 Control Software | 2026-10-17 01:31:25 | 0 | |||||||
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Operant Box for Auditory Tasks project Resource Report Resource Website |
Operant Box for Auditory Tasks project (RRID:SCR_021564) | data or information resource, instrument resource, portal, project portal | Portal provides operant box designed to train small primates in auditory tasks.Device is based on computer and Arduino Mega 2560 board, named OBAT (Operant Box for Auditory Tasks), designed to present two different auditory stimuli to small primates.All schematics and software source code are available. | Instrument, operant box, train small primates, auditory tasks, OpenBehavior |
is listed by: OpenBehavior is related to: Operant Box for Auditory Tasks |
DOI:10.3758/s13428-017-0906-6 | Free, Freely available | SCR_021564 | SciCrunch Registry | Operant Box for Auditory Tasks | 2026-10-17 01:30:57 | 0 | ||||||||
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Rodent Operant Bucket project Resource Report Resource Website |
Rodent Operant Bucket project (RRID:SCR_021565) | data or information resource, instrument resource, portal, project portal | Portal for open source operant chamber, based on Arduino microcontroller platform, that can be used to train mice to respond for reward. Designed by NIDDK scientists.Apparatus contains two nose pokes, drinking well, and solenoid controlled sucrose delivery system. Chamber can run magazine training, fixed ratio and progressive ratio training schedules, and can be programmed to run more complicated behavioral paradigms. | Instrument, operant chamber, Arduino microcontroller platform, train mice, reward respond, OpenBehavior |
is listed by: OpenBehavior is related to: NIDDK- National Institute of Diabetes and Digestive and Kidney Diseases Obesity Resources is related to: Rodent Operant Bucket |
DOI:10.3758/s13428-015-0603-2 | Free, Freely available | SCR_021565 | SciCrunch Registry | Rodent Operant Bucket, ROBucket | 2026-10-17 01:31:25 | 0 | ||||||||
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poke device arduino Resource Report Resource Website |
poke device arduino (RRID:SCR_021608) | software resource | Software tool as script to test if IR led, IR photodiode, arduino and 3D printed nose poke device work properly. Part of Nose Poke Device system. | OpenBehavior, nose poke device, microcontroller code, electronic parts conrol |
is listed by: OpenBehavior is related to: Nose Poke Device |
Free, Available for download, Freely Available | https://edspace.american.edu/openbehavior/project/nose-poke-device/ | SCR_021608 | SciCrunch Registry | poke_device_arduino | 2026-10-17 01:31:25 | 0 | ||||||||
|
Hybrid-drive combining Optogenetics, Pharmacology, and Electrophysiology Resource Report Resource Website |
Hybrid-drive combining Optogenetics, Pharmacology, and Electrophysiology (RRID:SCR_021606) | software resource | Softwre tool as part of Hybrid-drive combining Optogenetics, Pharmacology, and Electrophysiology project for brain implant. | Software resource, OpenBehavior |
is listed by: OpenBehavior is related to: Hybrid-drive combining Optogenetics, Pharmacology, and Electrophysiology project |
DOI:10.3389/fncir.2018.00041 | Free, Available for download, Freely Available | https://edspace.american.edu/openbehavior/project/hope/ | SCR_021606 | SciCrunch Registry | hope | 2026-10-17 01:30:58 | 0 | |||||||
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CIRIquant Resource Report Resource Website 1+ mentions |
CIRIquant (RRID:SCR_021661) | data analysis software, data processing software, software application, software resource, software toolkit | Software Python package for accurate circRNA quantification and differential expression analysis. Comprehensive analysis pipeline for circRNA detection and quantification in RNA-Seq data. Accurate quantification of circular RNAs identifies extensive circular isoform switching events. | circRNA quantification, differential expression analysis, RNA-Seq data, circular RNA, circular isoform switching events | National Natural Science Foundation of China | DOI:10.1038/s41467-019-13840-9 | Free, Available for download, Freely available | https://sourceforge.net/projects/ciri/files/, https://ciri-cookbook.readthedocs.io/en/latest/CIRIquant_0_home.html# | SCR_021661 | SciCrunch Registry | 2026-10-17 01:31:26 | 4 | ||||||||
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Single Cell Doublet Scoring Resource Report Resource Website 1+ mentions |
Single Cell Doublet Scoring (RRID:SCR_021541) | SCDS | data analysis software, data processing software, software application, software resource | Software R package for computational doublet annotation of single cell RNA sequencing data. Software tool for in silico identification of doublets in scRNA-seq data. | Doublet annotation, single cell RNA sequencing data, in silico doublet annotation, single cell RNA sequencing data | Free, Available for download, Freely available | SCR_021541 | SciCrunch Registry | 2026-10-17 01:31:24 | 9 | ||||||||||
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NanoString: GeoMx Digital Spatial Profiler Resource Report Resource Website 10+ mentions |
NanoString: GeoMx Digital Spatial Profiler (RRID:SCR_021660) | GeoMx DSP | instrument resource | Integrated commercial system comprising hardware, software and nCounter chemistry that enables simultaneous, highly multiplex spatial profiling of proteins or RNA in FFPE tissues. DSP platform quantifies abundance of protein or RNA by counting unique indexing oligonucleotides assigned to each target of interest. Used to rapidly and quantitatively assess biological implications of heterogeneity within tissue samples. | Spatial profiling, proteins spatial profiling, RNA spatial profiling, NanoString, counting unique indexing oligonucleotides, tissue heterogeneity, Digital Spatial Profiler, instrument, equipment, USEDit | is listed by: USEDit | PMID:32393914 | Restricted | SCR_021660 | SciCrunch Registry | GeoMx Digital Spatial Profiler | 2026-10-17 01:30:58 | 34 | |||||||
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Hamamatsu: NanoZoomer 2.0-HT Resource Report Resource Website 10+ mentions |
Hamamatsu: NanoZoomer 2.0-HT (RRID:SCR_021658) | instrument resource | High speed, high resolution digital scanner with network features. User friendly full slide scanner designed to process up to 210 slides automatically. | Hamamatsu, digital scanner, full slide scanner, 210 slides process, automatic scanner, instrument, equipment, USEDit | is listed by: USEDit | https://raw.githubusercontent.com/SciCrunch/RRID-Instruments/refs/heads/main/PDF/SCR_021658.pdf | Model_Number_NanoZoomer_2.0-HT | SCR_021658 | SciCrunch Registry | Hamamatsu NanoZoomer 2.0-HT System | 2026-10-17 01:30:50 | 26 | ||||||||
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ontquery Resource Report Resource Website 1+ mentions |
ontquery (RRID:SCR_021659) | software resource | Software tool as framework querying ontology terms within SciCrunch and SciCrunch SciGraph endpoints. | Querying ontology terms, ontology terms, SciCrunch SciGraph endpoints, querying ontology | Free | https://github.com/tgbugs/ontquery | SCR_021659 | SciCrunch Registry | 2026-10-17 01:32:06 | 1 | ||||||||||
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Federal University of Santa Catarina; Santa Catarina; Brazil Resource Report Resource Website 1+ mentions |
Federal University of Santa Catarina; Santa Catarina; Brazil (RRID:SCR_021535) | data or information resource, portal, topical portal | Public university in Florianópolis, the capital city of Santa Catarina in southern Brazil. | University | is parent organization of: EthoWatcher project | SCR_021535 | SciCrunch Registry | 2026-10-17 01:31:24 | 3 | |||||||||||
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McKinley: Cellometer Auto T4 Resource Report Resource Website 1+ mentions |
McKinley: Cellometer Auto T4 (RRID:SCR_021656) | instrument resource | System includes automated cell counter for trypan blue viability for cell lines and bright field imaging and pattern recognition software to quickly and accurately identify and count individual cells. Cell count, concentration, diameter, and % viability are automatically calculated and reported. | Automated cell counter, trypan blue cell viability, bright field imaging, pattern recognition, count individual cells, cell concentration count, cell diameter count, instrument, equipment, USEDit | is listed by: USEDit | Commercially available | Model_Number_Auto_T4 | SCR_021656 | SciCrunch Registry | Auto T4, Nexcellom Bioscience Cellometer Auto T4 Bright Field Cell Counter, Cellometer Auto T4 Bright Field Cell Counter | 2026-10-17 01:30:58 | 3 | ||||||||
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Calcium Imaging data Analysis Resource Report Resource Website 10+ mentions |
Calcium Imaging data Analysis (RRID:SCR_021533) | CaImAn | data processing software, image analysis software, software application, software library, software resource, software toolkit | Open source software tool for scalable calcium imaging data analysis. Used for large scale calcium imaging analysis, including movie handling, motion correction, source extraction, spike deconvolution and result visualization. | calcium imaging analysis, movie handling, motion correction, source extraction, spike deconvolution, result visualization, OpenBehavior |
is listed by: OpenBehavior is related to: Calcium Imaging data Analysis project |
DOI:10.7554/elife.38173 | Free, Available for download, Freely Available | https://edspace.american.edu/openbehavior/project/caiman/ | SCR_021533 | SciCrunch Registry | 2026-10-17 01:30:57 | 44 |
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