Searching the RRID Resource Information Network
Are you sure you want to leave this community? Leaving the community will revoke any permissions you have been granted in this community.
SciCrunch Registry is a curated repository of scientific resources, with a focus on biomedical resources, including tools, databases, and core facilities - visit SciCrunch to register your resource.
| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Arrowsmith Resource Report Resource Website 1+ mentions |
Arrowsmith (RRID:SCR_002523) | data or information resource, portal, project portal, software application, software resource, text-mining software | Portal for documenting the Arrowsmith project and developing text mining tools for scientific, and specifically neuroscience, literature. It also contains a search functions that identifies similar concepts between two articles. | data mining software, neuroscience literature, text mining, project portal | has parent organization: University of Illinois at Chicago; Illinois; USA | National Library of Medicine ; National Institute of Mental Health |
PMID:19185946 | Free, Freely available | nif-0000-00126 | SCR_002523 | SciCrunch Registry | Arrowsmith Project | 2026-10-17 01:32:11 | 3 | ||||||
|
Mass Spectrometry Ontology Resource Report Resource Website |
Mass Spectrometry Ontology (RRID:SCR_003579) | MS | controlled vocabulary, data or information resource, ontology | A structured controlled vocabulary for the annotation of mass spectrometry experiments. | obo |
is listed by: BioPortal has parent organization: HUPO Proteomics Standards Initiative |
nlx_157465 | SCR_003579 | SciCrunch Registry | 2026-10-17 01:31:32 | 0 | |||||||||
|
Predictions for Entire Proteomes Resource Report Resource Website 500+ mentions |
Predictions for Entire Proteomes (RRID:SCR_002803) | data analysis software, data processing software, sequence analysis software, software application, software resource, web application | Web application for sequence analysis and the prediction of protein structure and function. The user interface intakes protein sequences or alignments and returned multiple sequence alignments, motifs, and nuclear localization signals., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on January 15,2026. | sequence analysis database, protein structure prediction, protein structure, protein function, bio.tools, FASEB list |
is listed by: Debian is listed by: bio.tools has parent organization: Columbia University; New York; USA |
BMBF | PMID:24799431 DOI:10.1093/nar/gkh377 |
THIS RESOURCE IS NO LONGER IN SERVICE | nif-0000-00136, OMICS_07135, biotools:predictprotein | https://bio.tools/predictprotein, https://sources.debian.org/src/predictprotein/ | http://cubic.bioc.columbia.edu/pep/ | SCR_002803 | SciCrunch Registry | PredictProtein | 2026-10-17 01:32:11 | 643 | ||||
|
OpenSim Resource Report Resource Website 500+ mentions |
OpenSim (RRID:SCR_002683) | simulation software, software application, software resource | OpenSim is an open-source software system that lets users develop models of musculoskeletal structures and create dynamic simulations of movement. The software provides a platform on which the biomechanics community can build a library of simulations that can be exchanged, tested, analyzed, and improved through multi-institutional collaboration. The underlying software is written in ANSI C++, and the graphical user interface (GUI) is written in Java. OpenSim technology makes it possible to develop customized controllers, analyses, contact models, and muscle models among other things. These plugins can be shared without the need to alter or compile source code. Users can analyze existing models and simulations and develop new models and simulations from within the GUI. | muscle-driven simulation, musculoskeletal biomechanics, neuromuscular simulation, modeling software, simulation software |
is related to: Simtk.org is related to: Neuromuscular Models Library has parent organization: Stanford University; Stanford; California |
Simbios ; NIGMS U54 GM072970; DARPA |
Public, Free, Acknowledgement requested | nif-0000-23308 | https://simtk.org/home/opensim, http://opensim.stanford.edu/support/index.html | SCR_002683 | SciCrunch Registry | 2026-10-17 01:31:07 | 612 | |||||||
|
RegulonDB Resource Report Resource Website 100+ mentions |
RegulonDB (RRID:SCR_003499) | RegulonDB | data or information resource, database | Database on transcriptional regulation in Escherichia coli K-12 containing knowledge manually curated from original scientific publications, complemented with high throughput datasets and comprehensive computational predictions. Graphic and text-integrated environment with friendly navigation where regulatory information is always at hand. They provide integrated views to understand as well as organized knowledge in computable form. Users may submit data to make it publicly available. | transcription, gene regulation, operon, bacteria, evolutionary conservation, regulatory phrase, transcriptional regulation, transcriptional regulatory network, bio.tools, FASEB list |
is listed by: OMICtools is listed by: 3DVC is listed by: bio.tools is listed by: Debian has parent organization: National Autonomous University of Mexico; Mexico City; Mexico |
NIGMS GM071962; NIGMS GM077678; Consejo Nacional de Ciencia y Tecnologia 103686; Consejo Nacional de Ciencia y Tecnologia 179997; Programa de Apoyo a Proyectos de Investigacion e Innovacion Tecnologica IN210810; Programa de Apoyo a Proyectos de Investigacion e Innovacion Tecnologica IN209312 |
PMID:23203884 | OMICS_01868, nif-0000-03399, biotools:regulondb | https://bio.tools/regulondb | SCR_003499 | SciCrunch Registry | 2026-10-17 01:32:12 | 153 | ||||||
|
Gene Weaver Resource Report Resource Website 10+ mentions |
Gene Weaver (RRID:SCR_003009) | analysis service resource, data analysis service, data or information resource, data repository, database, production service resource, service resource, storage service resource | Freely accessible phenotype-centered database with integrated analysis and visualization tools. It combines diverse data sets from multiple species and experiment types, and allows data sharing across collaborative groups or to public users. It was conceived of as a tool for the integration of biological functions based on the molecular processes that subserved them. From these data, an empirically derived ontology may one day be inferred. Users have found the system valuable for a wide range of applications in the arena of functional genomic data integration. | phenotype, microarray, gene, genome, functional genomics, process, pathway, function, gene set, genomic data integration, analysis, visualization |
is used by: NIF Data Federation is used by: Integrated Datasets is listed by: OMICtools is related to: Integrated Manually Extracted Annotation has parent organization: Jackson Laboratory |
Integrative Neuroscience Initiative on Alcoholism ; NIAAA R01 AA18776; NIAAA U01 AA13499; NIAAA U24 AA13513 |
PMID:22080549 PMID:19733230 |
Free, Freely available | r3d100012464, OMICS_02232, nif-0000-00517 | http://ontologicaldiscovery.org/, https://doi.org/10.17616/R3248T | SCR_003009 | SciCrunch Registry | GeneWeaver, GeneWeaver - A system for the integration of functional genomics experiments, Ontological Discovery Environment, GeneWeaver.org | 2026-10-17 01:31:08 | 39 | |||||
|
ProteomeXchange Resource Report Resource Website 5000+ mentions |
ProteomeXchange (RRID:SCR_004055) | catalog, consortium, data or information resource, data repository, database, organization portal, portal, service resource, storage service resource | A data repository for proteomic data sets. The ProteomeExchange consortium, as a whole, aims to provide a coordinated submission of MS proteomics data to the main existing proteomics repositories, as well as to encourage optimal data dissemination. ProteomeXchange provides access to a number of public databases, and users can access and submit data sets to the consortium's PRIDE database and PASSEL/PeptideAtlas. | consortium, database, proteomics, MS proteomics, protein, mass spectrometry, bio.tools, FASEB list |
uses: Proteomics Identifications (PRIDE) uses: PeptideAtlas is recommended by: NIDDK Information Network (dkNET) is recommended by: NIDDK - National Institute of Diabetes and Digestive and Kidney Diseases is listed by: bio.tools is listed by: Debian is affiliated with: Omics Discovery Index is related to: Proteomics Identifications (PRIDE) is related to: PeptideAtlas is related to: SIB Swiss Institute of Bioinformatics is related to: Mass spectrometry Interactive Virtual Environment (MassIVE) is related to: European Bioinformatics Institute is related to: ProteomeTools is related to: Integrated Proteome Resources has parent organization: European Bioinformatics Institute |
European Union 260558 | Public, The community can contribute to this resource | r3d100012122, nlx_158620, biotools:proteomexchange | http://proteomecentral.proteomexchange.org, https://bio.tools/proteomexchange, https://doi.org/10.17616/R32D29 | SCR_004055 | SciCrunch Registry | , ProteomeXchange, Proteome Exchange | 2026-10-17 01:31:06 | 6107 | ||||||
|
Code Analysis Repository and Modelling for e-Neuroscience Resource Report Resource Website 10+ mentions |
Code Analysis Repository and Modelling for e-Neuroscience (RRID:SCR_002795) | CARMEN | data or information resource, data repository, database, service resource, software repository, software resource, storage service resource | THIS RESOURCE IS NO LONGER IN SERVICE.Documented on January 14, 2023. Infrastructure for sharing data, tools and services, this virtual research environment (VRE) supports e-Neuroscience and is designed to provide services for data and processing of that data. While the system is initially focused on electrophysiology data (neural activity recordings are the primary data types), it is equally applicable to many domains outside neuroscience. The Portal Provides: * User login and customization. * Data upload/download. * Data handling including custom permissions for public, shared or private data. * The ability to invoke custom public, shared or private services that consume and produce data. For example, it would allow spike series to be run through a sorter, producing new data representing the sorted spikes. * The ability to host services written in a number of languages including, but not limited to Matlab, R, Python, Perl, Java. * A system to support metadata for data objects, which provides extensive support for entering metadata at the point of upload, and allows the generation of metadata from services to provide provenance information. * The ability to invoke additional visualization for the data, for example, via the Signal Data Explorer. A core part is the development of: (i) minimum reporting guidelines for annotation of data and other computational resources for the purpose of sharing, and; (ii) intermediate formats and APIs for translation between proprietary and bespoke data types. These recommendations are being implemented and the global community is encouraged both to engage in their specification and make use of them for their own data sharing systems. * MINI: Minimum Information about a Neuroscience Investigation - This framework represents the formalized opinion of the CARMEN consortium and its associates, and identifies the minimum reporting information required to support the use of electrophysiology in a neuroscience study, for submission to the CARMEN system. * NDTF: Neurophysiology Data Translation Format - This framework provides a vendor-independent mechanism for translating between raw and processed neurphysiology data in the form of time and image series. They are implementing NDTF in CARMEN but it may also be useful for third party applications. | neural activity recording, signal, image series, neurophysiology, data sharing, metadata standard, collaboration, electrophysiology, FASEB list |
has parent organization: Newcastle University; Newcastle upon Tyne; United Kingdom is parent organization of: Retinal wave repository |
EPSRC EP/E002331/1 | PMID:20679128 PMID:18674883 |
THIS RESOURCE IS NO LONGER IN SERVICE | r3d100012284, nif-0000-00442 | https://doi.org/10.17616/R3W94G | SCR_002795 | SciCrunch Registry | Code Analysis Repository & Modelling for E-Neuroscience | 2026-10-17 01:31:08 | 29 | ||||
|
Sequence Tag Alignment and Consensus Knowledgebase Database Resource Report Resource Website |
Sequence Tag Alignment and Consensus Knowledgebase Database (RRID:SCR_002156) | data or information resource, data processing software, data visualization software, database, software application, software resource | THIS RESOURCE IS NO LONGER IN SERVICE, documented August 23, 2016. The STACKdb is knowledgebase generated by processing EST and mRNA sequences obtained from GenBank through a pipeline consisting of masking, clustering, alignment and variation analysis steps. The STACK project aims to generate a comprehensive representation of the sequence of each of the expressed genes in the human genome by extensive processing of gene fragments to make accurate alignments, highlight diversity and provide a carefully joined set of consensus sequences for each gene. The STACK project is comprised of the STACKdb human gene index, a database of virtual human transcripts, as well as stackPACK, the tools used to create the database. STACKdb is organized into 15 tissue-based categories and one disease category. STACK is a tool for detection and visualization of expressed transcript variation in the context of developmental and pathological states. The data system organizes and reconstructs human transcripts from available public data in the context of expression state. The expression state of a transcript can include developmental state, pathological association, site of expression and isoform of expressed transcript. STACK consensus transcripts are reconstructed from clusters that capture and reflect the growing evidence of transcript diversity. The comprehensive capture of transcript variants is achieved by the use of a novel clustering approach that is tolerant of sub-sequence diversity and does not rely on pairwise alignment. This is in contrast with other gene indexing projects. STACK is generated at least four times a year and represents the exhaustive processing of all publicly available human EST data extracted from GenBank. This processed information can be explored through 15 tissue-specific categories, a disease-related category and a whole-body index | exonic, expressed, expressed sequence tag (est), expression, fragment, gene, alignment, alternative gene, cdna, clone, cluster, developmental, disease, diversity, genome, homo sapiens, human, isoform, knowledgebase, meta-cluster, mrna, pathological, sequence, tissue, transcript, variant, visualization | PMID:11125101 | THIS RESOURCE IS NO LONGER IN SERVICE | nif-0000-20946 | SCR_002156 | SciCrunch Registry | STACKdb | 2026-10-17 01:31:31 | 0 | ||||||||
|
Seg3D Resource Report Resource Website 100+ mentions |
Seg3D (RRID:SCR_002552) | Seg3D | data processing software, data visualization software, image analysis software, image processing software, rendering software, segmentation software, software application, software resource | A free volume processing segmenting tool that combines a flexible manual interface with powerful image processing and segmentation algorithms. Users can explore and label image volumes using slice windows and 3D volume rendering. | analyze, c++, dicom, image display, linux, macos, microsoft, magnetic resonance, nrrd, posix/unix-like, rendering, segmentation, three dimensional display, visualization, volume rendering, win32 (ms windows), windows |
is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) has parent organization: University of Utah; Utah; USA |
NIGMS 8 P41 GM103545-15 | PMID:29083867 | Free, Available for download, Freely available | nlx_155959 | http://www.nitrc.org/projects/seg3d | SCR_002552 | SciCrunch Registry | 2026-10-17 01:32:11 | 106 | |||||
|
UK Sheep Genome Mapping Project Resource Report Resource Website 1+ mentions |
UK Sheep Genome Mapping Project (RRID:SCR_002272) | data or information resource, database, portal, topical portal | THIS RESOURCE IS NO LONGER IN SERVICE, documented August 23, 2016. The project aims to apply genome mapping research to sheep, utilizing previous research in sheep (in other countries) and in other species (in the UK and abroad) to the benefit of the UK sheep industry. The project itself uses existing breeding structures, knowledge of the sheep genome and experimental resources. It has three main aims: i) To use the Suffolk, Texel and Charollais Sire Referencing Schemes to detect and verify quantitative trait loci (QTLs) for growth and carcass composition traits ii) To investigate candidate genes and/or chromosomal regions for associations with production traits. iii) To investigate approaches for optimizing future genotyping strategies within the sire referencing schemes for practical and cost effective application of marker-assisted selection By using commercial breeding populations for the research, immediate application of beneficial results is possible. Potential benefits include increased genetic progress through marker assisted selection which utilizes the genotype information, correction of possible parentage errors (ultimately leading to additional genetic progress) and opportunities for using marker information for product certification. The project will benefit the UK sheep industry by the use of Marker Assisted Selection (MAS) utilizing QTL or gene variants identified in the project. Additional benefits may arise from parentage verification and correction of errors e.g. misallocation of lamb to ewe. In the longer term, opportunities may exist to use markers for quality control, tracing products to their source. The major advantage of the design of this project is that the results are immediately applicable to the breeding schemes within which the QTLs and/or genes are detected. The time lag in the application of the results that is often seen with experimental populations is minimized. The project requires close involvement with the Sire Reference Schemes, in return for their assistance the results have immediate benefit to animals within these groups. | gene, animal, breed, breeding, chromosomal, chromosome, genome, genotype, genotyping, lamb, map, mapping, marker, population, production, region, sheep, specie, structure, trait | THIS RESOURCE IS NO LONGER IN SERVICE | nif-0000-20995 | SCR_002272 | SciCrunch Registry | UKSGMP | 2026-10-17 01:31:31 | 1 | |||||||||
|
FrontalCortex.com Resource Report Resource Website |
FrontalCortex.com (RRID:SCR_002667) | curriculum material, data or information resource, narrative resource, short course material, slide, training material, video resource | A free website for for neurologists, neurology residents, and medical students. Contains thousands of images, hundreds of multiple-choice review questions, dozens of educational videos, several user forums, and a couple of online courses. Created by a neurology resident, it is currently maintained by a neurologist and a neuropathologist, with contributions from people from around the world. FrontalCortex.com is a free resource for neurology education. The target audience is neurology residents and medical students. It features a bank of hundreds of boards-type review questions, all of which contain feedback and references to relevant articles or texts. It also has an image gallery with thousands of images, including EEGs, radiographs, illustrations, and over a thousand unique neuropathology images. Online courses in neuropathology and electrodiagnostic testing have been created on the site, and continue to be refined. These include dozens of educational videos. FrontalCortex.com was created by a neurology resident. That resident is now a neurologist, and the neurology program director at Marshall University, and continues to run the page, with the help of other physicians volunteering their time. All the content contributions are donated by volunteers, and are reviewed by physicians. Financial support for the page comes from advertisements on the page, and the occasional donation. No login is required, unless you want to contribute to the growing bank of educational resources, in which case you can create a free account. : :education, neurology, resident, neuropathology, board review, RITE exam : : | education, board review, neurology, neuropathology, resident, rite exam | Free, Freely available | nif-0000-22726 | SCR_002667 | SciCrunch Registry | FrontalCortex | 2026-10-17 01:31:32 | 0 | |||||||||
|
Neal's DNA Mutation Site Resource Report Resource Website 1+ mentions |
Neal's DNA Mutation Site (RRID:SCR_002947) | Neal's DNA Mutation Site | data analysis software, data or information resource, data processing software, database, portal, software application, software resource, topical portal | This site provides access to mutation databases and software including the human hprt database, Human p53 database, Transgenic lacZ database, and Transgenic lacI database. Other avaialble programs include Mutational spectra comparison and relational database data entry. The most recent hprt database contains information on over 2,300 mutations found in vivo and in vitro in the human hprt gene and runs under Windows. The version for evaluation on this homepage has fewer mutations and is a DOS program. The database contains information on the mutagen, dose, spontaneous and induced mutant fraction, base position, amino acid position, amino acid change, local DNA sequence, cell type, citation, and other items. In addition, information regarding the cause and effect of mutations affecting splicing is given. Routines have been developed for the analysis of single base substitutions. The p53 database contains information on nearly 5,867 mutations found in the human p53 gene. The database itself has been updated in April of 1997. The database contains information on the cancer type, loss of heterozygosity, base position, amino acid position, amino acid change, local DNA sequence,citation, and other items. Routines have been developed for the analysis of single base substitutions. The Transgenic lacZ database contains information on 405 mutations found in vivo in the transgenic lacZ gene. It has last been updated in January of 1998. It provides information on the mutagen, dose, organ, mutant fraction, base position, amino acid position, amino acid change, local DNA sequence, citation, and other items. The Transgenic lacI database contains information on over 1700 mutations found in vivo in the transgenic lacI gene and on nearly 8000 mutations in the lacI gene in native E. coli. The database was updated in January 1998. The database contains information on the mutagen, dose, organ, mutant fraction, base position, amino acid position, amino acid change, local DNA sequence, citation, and other items. Routines have been developed for the analysis of single base substitutions for each of the databases. The software runs only on IBM-compatible PCs. | human, mouse | has parent organization: University of North Carolina at Chapel Hill; North Carolina; USA | Free, Available for download, Freely available | nif-0000-02995 | SCR_002947 | SciCrunch Registry | Human p53 Human hprt Rodent lacI and Rodent lacZ Databases and Software, Human p53 Human hprt Rodent lacI and Rodent lacZ Databases, Human p53 Human hprt Rodent lacI Rodent lacZ Databases | 2026-10-17 01:31:32 | 4 | |||||||
|
Pathway Analysis Tool for Integration and Knowledge Acquisition Resource Report Resource Website 1+ mentions |
Pathway Analysis Tool for Integration and Knowledge Acquisition (RRID:SCR_002100) | PATIKA | data or information resource, database, pathway analysis software | The human pathway database which contains different biological entities and reactions and software tools for analysis. PATIKA Database integrates data from several sources, including Entrez Gene, UniProt, PubChem, GO, IntAct, HPRD, and Reactome. Users can query and access this data using the PATIKAweb query interface. Users can also save their results in XML or export to common picture formats. The BioPAX and SBML exporters can be used as part of this Web service. | human, pathway, reaction, database, pathway analysis software, web service, biological entity, biological reaction |
uses: Entrez Gene uses: UniProt uses: PubChem uses: Gene Ontology uses: IntAct uses: HPRD - Human Protein Reference Database uses: Reactome |
PMID:12117798 PMID:14960461 |
THIS RESOURCE IS NO LONGER IS SERVICE. | nif-0000-20882 | http://www.cs.bilkent.edu.tr/~patikaweb/ | SCR_002100 | SciCrunch Registry | Pathway Analysis Tool for Integration and Knowledge Acquisition (PATIKA), PATIKA - Pathway Analysis Tools for Integration and Knowledge Acquisition | 2026-10-17 01:31:06 | 2 | |||||
|
Asian Cancer Research Group Resource Report Resource Website 1+ mentions |
Asian Cancer Research Group (RRID:SCR_004001) | ACRG | consortium, data or information resource, data set, organization portal, portal | An independent, not-for-profit consortium to accelerate research, and improve treatment for patients affected with the most commonly-diagnosed cancers in Asia by generating a genomic data resource for the most prevalent cancers in Asia. ACRG is focusing its initial efforts on Asian liver, gastric and lung cancers. Goals * Generate comprehensive genomics data sets for Asia-prevalent cancers * Conduct all research under good clinical practices and in accordance with local laws * Uncover key mutations and pathways for developing targeted therapies * Discover molecular tumor classifiers for patient stratification * Discover prognostic markers to identify high-risk patients * Freely share resulting raw data with scientific community to empower researchers globally and enable development of new diagnostics and medicines * Publish data analysis results jointly in prominent scientific journals Over the next two years, Lilly, Merck and Pfizer have committed to create an extensive pharmacogenomic cancer database that will be composed of data from approximately 2,000 tissue samples from patients with lung and gastric cancer that will be made publicly available to researchers and, over time, further populated with clinical data from a longitudinal analysis of patients. Comparison of the contrasting genomic signatures of these cancers could inform new approaches to treatment. Lilly has assumed responsibility for ultimately providing the data to the research public through an open-source concept managed by Lilly''''s Singapore research site. Moreover, Lilly, Merck and Pfizer will each provide technical and intellectual expertise. One dataset can be found at http://gigadb.org/dataset/100034 | asia, genomics, drug discovery, liver, gastric, lung, database, whole genome-wide study, drug development, basic research, data sharing, drug, oncology, pharmacogenomic, tissue, clinical, longitudinal |
uses: Gene Expression Omnibus uses: GigaDB is listed by: Consortia-pedia is related to: Merck is related to: Pfizer Animal Genetics is related to: BGI; Shenzhen; China has parent organization: Merck |
Eli Lilly and Company ; Merck ; Pfizer |
nlx_158412 | SCR_004001 | SciCrunch Registry | 2026-10-17 01:31:32 | 1 | ||||||||
|
Monte Carlo Simulation Software: tMCimg Resource Report Resource Website 1+ mentions |
Monte Carlo Simulation Software: tMCimg (RRID:SCR_002588) | tMCimg | simulation software, software application, software resource | Software application that uses a Monte Carlo algorithm to model the transport of photons through 3D volumes with spatially varying optical properties. Both highly-scattering tissues (e.g. white matter) and weakly scattering tissues (e.g. cerebral spinal fluid) are supported. Using the anatomical information provided by MRI, X-ray CT, or ultrasound, accurate solutions to the photon migration forward problems are computed in times ranging from minutes to hours, depending on the optical properties and the computing resources available. | c, computed tomography, macos, microsoft, modeling, monte carlo, magnetic resonance, optical imaging, posix/unix-like, windows, mri, x-ray ct, ultrasound, photon | is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) | PMID:19424345 | Free, Available for download, Freely available | nlx_155993 | http://www.nitrc.org/projects/tmcimg | SCR_002588 | SciCrunch Registry | Monte Carlo Photon Transport | 2026-10-17 01:31:31 | 1 | |||||
|
HCV Databases Resource Report Resource Website 50+ mentions |
HCV Databases (RRID:SCR_002863) | HCV Databases | data or information resource, disease-related portal, portal, topical portal | The Hepatitis C Virus (HCV) Database Project strives to present HCV-associated genetic and immunologic data in a user-friendly way, by providing access to the central database via web-accessible search interfaces and supplying a number of analysis tools. | hcv, hepatitis c virus, hepatitis c, database, data analysis service, sequence, immunology, annotation, FASEB list |
has parent organization: HIV Databases is parent organization of: HCV Sequence Database is parent organization of: HCV Immunology Database |
Hepatitis C | NIAID | Free, Freely available | nif-0000-02944 | SCR_002863 | SciCrunch Registry | Hepatitis C Virus Database, Hepatitis C Virus Database Project, HCV Database, Hepatitis C Virus Databases, Hepatitis C Virus (HCV) Database Project | 2026-10-17 01:31:08 | 71 | |||||
|
Annotation Ontology Resource Report Resource Website 1+ mentions |
Annotation Ontology (RRID:SCR_002862) | AO | controlled vocabulary, data or information resource, ontology | Provides vocabulary for performing several types of annotation - comment, entities annotation (or semantic tags), textual annotation (classic tags), notes, examples, erratum... - on any kind of electronic document (text, images, audio, tables...) and document parts. AO is not providing any domain ontology but it is fostering the reuse of the existing ones for not breaking the principle of scalability of the Semantic Web. | annotation, semantic tag, text mining, semantic web, standard |
is listed by: FORCE11 is related to: Annotea is related to: W3C Open Annotation Community Group is related to: DOMEO has parent organization: Harvard Medical School; Massachusetts; USA |
EMD Serono ; Inc. ; Eli Lilly and Company |
PMID:21624159 | Free, Freely available, Available for download | nif-0000-02943 | https://www.force11.org/node/4718 | SCR_002862 | SciCrunch Registry | AO - Annotation Ontology, annotation-ontology | 2026-10-17 01:31:32 | 1 | ||||
|
System for Earth Sample Registration Resource Report Resource Website 10+ mentions |
System for Earth Sample Registration (RRID:SCR_002222) | SESAR | catalog, data or information resource, database | Sample Catalog and Registry for the International Geo Sample Number. SESAR catalogs and preserves sample metadata profiles, and provides access to the sample catalog via the Global Sample Search. | international geo sample number, metadata, sample, biology, gas, liquid, mineral, particulate, rock, sediment, soil, register |
is listed by: CINERGI has parent organization: EarthChem |
NSF | Free, Freely available | nlx_154747, r3d100010420 | https://doi.org/10.17616/R3H89M | SCR_002222 | SciCrunch Registry | 2026-10-17 01:31:06 | 14 | ||||||
|
YLoc Resource Report Resource Website 10+ mentions |
YLoc (RRID:SCR_002464) | YLoc | analysis service resource, data access protocol, data analysis service, production service resource, service resource, software resource, web service | An interpretable web server for predicting subcellular localization. In addition to the predicted location, YLoc gives a reasoning why this prediction was made and which biological properties of the protein sequence lead to this prediction. Moreover, a confidence estimate helps users to rate predictions as trustworthy. YLoc+ is able to predict the location of multiple-targeted proteins with high accuracy. The YLoc webserver is also accessible via SOAP. | subcellular localization, protein |
is listed by: OMICtools has parent organization: University of Tubingen; Tubingen; Germany |
PMID:20507917 PMID:20299325 |
Acknowledgement requested | OMICS_01638 | SCR_002464 | SciCrunch Registry | Yloc - Interpretable Subcellular Localization Prediction | 2026-10-17 01:32:11 | 36 |
Can't find your Tool?
We recommend that you click next to the search bar to check some helpful tips on searches and refine your search firstly. Alternatively, please register your tool with the SciCrunch Registry by adding a little information to a web form, logging in will enable users to create a provisional RRID, but it not required to submit.
Welcome to the dkNET Resources search. From here you can search through a compilation of resources used by dkNET and see how data is organized within our community.
You are currently on the Community Resources tab looking through categories and sources that dkNET has compiled. You can navigate through those categories from here or change to a different tab to execute your search through. Each tab gives a different perspective on data.
If you have an account on dkNET then you can log in from here to get additional features in dkNET such as Collections, Saved Searches, and managing Resources.
Here is the search term that is being executed, you can type in anything you want to search for. Some tips to help searching:
If you are logged into dkNET you can add data records to your collections to create custom spreadsheets across multiple sources of data.
Here are the facets that you can filter the data by.
If you have any further questions please check out our FAQs Page to ask questions and see our tutorials. Click this button to view this tutorial again.
The NIDDK Information Network (dkNET) serves the needs of basic and clinical investigators by providing seamless access to large pools of data and research resources relevant to the mission of The National Institute of Diabetes Digestive and Kidney Diseases (NIDDK). dkNET is hosted at University of California San Diego, and is supported by NIH NIDDK grant U24DK097771.
Email: info_at_ dknet.org
