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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | ||||||||||||||
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BrainSlices Resource Report Resource Website |
BrainSlices (RRID:SCR_010504) | BS | data repository, image repository, service resource, storage service resource | BrainSlices is a repository of annotated high-resolution images of brain tissue. | has parent organization: Nencki Institute of Experimental Biology; Warsaw; Poland | Polish Ministry of Science and Higher Education POIG.02.03.00-00-003/09 | nlx_158569 | SCR_010504 | SciCrunch Registry | 2026-10-24 12:49:56 | 0 | |||||||||
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Hunt Biobank Resource Report Resource Website 50+ mentions |
Hunt Biobank (RRID:SCR_010626) | HUNT Biobank | biomaterial supply resource, cell repository, material resource | International biobank storing whole blood and DNA from 200,000 individuals, serum and plasma samples from more than 100,000 individuals as well as urine, RNA tubes, cells, buffy coat and Na-heparin tubes for environmental analysis for as many as 50,000 individuals. All bio-specimens from the HUNT surveys are collected, processed and stored at the HUNT Biobank in Levanger. The National CONOR Biobank is located on the same site, where it serves as a central research repository for DNA samples from all the largest Norwegian health surveys. These make up the Cohorts of Norway (CONOR), which include samples from more than 200,000 individuals. * HUNT 1 was carried out in 1984-1986 to establish the health history of 75,000 people. * HUNT 2, carried out in 1995-1997, focused on the evolution of the health history of 74,000 people. This included blood sample collection from 65,000 people. The data that accompany biospecimens in the biobank are stored in secured computer systems that run complex database management and analysis software. * HUNT 3 was completed in June 2008. 93,210 people were invited to participate in the study, and as of the 6th of June, 2008, 48,289 people participated (52% participation rate). The data, collected by means of questionnaires, interviews, clinical examinations and collection of blood and urine samples, will be ready for analysis in January 2009. * Young-HUNT is the adolescent part of HUNT including participants aged 13-19 years. Young-HUNT1 (1995-97) was conducted as part of HUNT2, 9141 adolescents participated (90% response rate). Young-HUNT2 (2000-01) was a follow-up study of Young-HUNT1, 2400 students participated in both studies (77% of the invited). Young-HUNT3 (2006-08) was a new cross-sectional study as part of HUNT3. This time 8677 adolescents participated (87% response rate). Data collection included self-reported questionnaires, structured interviews, clinical measurements and, in Young-HUNT3, buccal smears. All institutions with research expertise can apply for access to analyze HUNT data. Projects must have recommendations from The Regional Committee for Medical Research in Norway (REK) and be registered with The Norwegian Social Science Data Services (NSD). | longitudinal study, population, health, environment, whole blood, dna, serum, plasma, urine, rna, cell, buffy coat, na-heparin, blood, medical history, family medical history, adolescent, self-reported questionnaire, structured interview, clinical measurement, buccal smear, analysis, adult, adolescent, aging, FASEB list |
is listed by: One Mind Biospecimen Bank Listing has parent organization: Norwegian University of Science and Technology; Trondheim; Norway |
nlx_57833 | http://www.huntbiosciences.com/default.asp?Valgt=Ja&Mode=Meny&MenyID=41&HovedMenyID=41&Hovedmeny=HUNT+Biobank | SCR_010626 | SciCrunch Registry | Nord-Tr��������ndelag health study Biobank, Nord-Trondelag health study, HUNT Databank | 2026-10-24 12:49:57 | 50 | |||||||
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Mayo Mitochondrial Disease Biobank Resource Report Resource Website |
Mayo Mitochondrial Disease Biobank (RRID:SCR_010598) | Mitochondrial Biobank | biomaterial supply resource, cell repository, material resource | A biobank of blood and tissue samples from patients with known and suspected mitochondrial diseases along with data from their families. Samples are used in research to understand the family of mitochondrial disorders such as Alpers' syndrome, encephalopathy, and Friedrieich's ataxia, among many others. The goal of the biobank is to advance the understanding of mitochondrial disease and improve patient care. | blood, tissue, mitochondrial disease, mitochrondrial disorder, alper's progressive sclerosing polio dystrophy, leber hereditary optic neuroretinopathy, barth syndrome, leigh syndrome, leigh-like syndrome, chronic progressive external ophthalmoplegia, mitochondrial myopathy, encephalopathy, lactic acidosis, stroke-like episodes, melas, dominant optic atrophy, myoclonic epilepsy associated with ragged-red fibers, merrf, merrf syndrome, friedreich's ataxia, neuropathy ataxia, retinitis pigmentosa, narp, hereditary paragangliom, pearson syndrome, hereditary spastic paraplegia, wolfram syndrome, kearns-sayre syndrome, research, biobank, treatment, patient care |
is listed by: One Mind Biospecimen Bank Listing has parent organization: Mayo Clinic Minnesota; Minnesota; USA |
Mitochondrial disease, Mitochrondrial disorder, Alper's progressive sclerosing poliodystrophy, Leber hereditary optic neuroretinopathy, Barth syndrome, Leigh syndrome, Leigh-like Syndrome, Chronic progressive exteRNAl ophthalmoplegia, Mitochondrial myopathy, Encephalopathy, Lactic acidosis, Stroke-like episodes, MELAS, Dominant optic atrophy, Myoclonic epilepsy associated with ragged-red fibers, MERRF Syndrome, Friedreich's Ataxia, Neuropathy ataxia and retinitis pigmentosa, Hereditary paragangliom, Pearson syndrome, Hereditary spastic paraplegia, Wolfram syndrome, Kearns-Sayre syndrome | Available to the research community, Application and review process | nlx_49318 | SCR_010598 | SciCrunch Registry | Mayo Clinic Mitochondrial Disease Biobank, Mitochondrial Disease Biobank | 2026-10-24 12:49:56 | 0 | ||||||
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ERP PCA Toolkit Resource Report Resource Website 1+ mentions |
ERP PCA Toolkit (RRID:SCR_013105) | ERP PCA Toolkit | data processing software, software application, software resource, software toolkit | This Matlab toolkit is a general purpose tool for editing, visualizing, and analyzing EEG data (both Event Related Potential - ERP and spectral) whose most recent version has been downloaded over 1000 times. Its three chief highlights are: 1) an optimized automatic artifact correction function that includes ICA correction for eye blinks and saccades. 2) Extensive support for easily conducting PCA and ICA through all stages of the procedure, including inspection of reconstituted waveforms and batch ANOVAs. 3) Implementation of robust ANOVAs, including McCarthy-Wood vector test. It has a graphical user interface for point and click usage and comes with an extensive illustrated tutorial. A description of the toolkit was published in Dien (2010) in Journal of Neuroscience Methods. It relies on both internal functions as well as borrowed functions from both EEGlab and FieldTrip. | eeg, meg, electrocorticography, matlab, visualization | is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) | GNU General Public License v2 | nlx_155753 | http://www.nitrc.org/projects/erppcatoolkit | SCR_013105 | SciCrunch Registry | 2026-10-24 12:49:57 | 6 | |||||||
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University of Miami Labs and Facilities Resource Report Resource Website |
University of Miami Labs and Facilities (RRID:SCR_010996) | UM Labs and Facilities, UM Labs & Facilities | data or information resource, organization portal, portal | Number of core facilities and shared resources developed at University of Miami are available to researchers and trainees. These resources allow centralized access to specialized equipment and services, providing cutting edge technologies, reagents, and special products needed to conduct high quality, interdisciplinary research in cost effective way. |
is listed by: ScienceExchange is related to: University of Miami Stable Isotope Laboratory Core Facillity is related to: UM Sylvester Comprehensive Cancer Center Labs and Facilities has parent organization: University of Miami; Florida; USA |
SciEx_925 | http://www.scienceexchange.com/facilities/university-of-miami | SCR_010996 | SciCrunch Registry | University of Miami Labs & Facilities | 2026-10-24 12:49:57 | 0 | ||||||||
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National Centers for Biomedical Computing Resource Report Resource Website 1+ mentions |
National Centers for Biomedical Computing (RRID:SCR_010635) | NCBC | data or information resource, organization portal, portal | The NCBCs are a set of networked computation core facilities for biomedical infrastructure funded under the NIH Common Fund, the National Program of Excellence in Biomedical Computing (NPEBC). There are seven funded Centers that cover systems biology, image processing, biophysical modeling, biomedical ontologies, information integration, and tools for gene-phenotype and disease analysis. The centers will create innovative software programs and other tools that enable the biomedical community to integrate, analyze, model, simulate, and share data on human health and disease. Each Center has Cores that are focused on (1) computational science, (2) biomedical computational science and (3) driving biological projects whose intent is to drive the interaction between computational and biomedical computational science. In addition to the Centers, the NIH has a number of active program announcements to develop collaborations with the biomedical research community��this includes announcements from the Biomedical Information Science and Technology Initiative (BISTI) and the Program for Collaborations with National Centers for Biomedical Computing. There are numerous efforts in education and training that emanate from the Centers and there is an annual all hands meeting. | nih (common fund) |
is related to: iDASH is related to: iTools is related to: Center for Computational Biology at UCLA is related to: i2b2 Research Data Warehouse is related to: Informatics for Integrating Biology and the Bedside is related to: National Alliance for Medical Image Computing is related to: Simbios is related to: National Center for Biomedical Ontology is related to: National Center for Integrative Biomedical Informatics is related to: MAGNet - Multiscale Analysis of Genomic and Cellular Networks is related to: iDASH has parent organization: National Institutes of Health is parent organization of: Biositemaps is parent organization of: National Center for Biomedical Ontology is parent organization of: Biomedical Resource Ontology is parent organization of: National Alliance for Medical Image Computing is parent organization of: NCBO Annotator |
NIH | nlx_62048 | SCR_010635 | SciCrunch Registry | NIH Roadmap National Centers for Biomedical Computing | 2026-10-24 12:49:56 | 1 | |||||||
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GSA-SNP Resource Report Resource Website 10+ mentions |
GSA-SNP (RRID:SCR_013109) | GSA-SNP | data processing software, software application, software resource | A tool for the gene-set (or pathway) analysis of a genome-wide association study result. It accepts a genome-wide list of SNPs and their association P-values. It summarizes the SNP P-values into nearby genes. The gene-by-gene summary results are then further summarized by gene-sets such as Gene Ontology, KEGG pathways, or user-created gene-sets. Various standardization and statistical tests can be performed and the resulting gene-sets that pass a significance level after multiple-testing correction are reported. The tool is written in Java and is available as a standalone version. | clinical neuroinformatics, computational neuroscience, imaging genomics, bio.tools |
is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) is listed by: Debian is listed by: bio.tools has parent organization: Soongsil University; Seoul; South Korea |
PMID:20501604 | GNU General Public License v2 | nlx_155765, biotools:gsa-snp | https://bio.tools/gsa-snp | SCR_013109 | SciCrunch Registry | 2026-10-24 12:49:57 | 18 | ||||||
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PrabiG Resource Report Resource Website |
PrabiG (RRID:SCR_010636) | data or information resource, organization portal, portal | PrabiG is the Grenoble portal of the Prabi (Rhone-Alpes Bioinformatics Center) platform. It aims at providing the scientific community with tools and data related to proteomics and metabolomics. PrabiG is currently hosting the following projects : * UniPathway * ProteHome * OBIWarehouse * AT_Chloro |
has parent organization: PRABI is parent organization of: UniPathway is parent organization of: OBIWarehouse |
nlx_62118 | SCR_010636 | SciCrunch Registry | Prabi Grenoble | 2026-10-24 12:49:56 | 0 | ||||||||||
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Trim Galore Resource Report Resource Website 5000+ mentions Rating or validation data |
Trim Galore (RRID:SCR_011847) | Trim Galore! | data processing software, software application, software resource | Software tool to automate quality and adapter trimming as well as quality control, with some added functionality to remove biased methylation positions for RRBS sequence files for directional, non-directional or paired-end sequencing. Wrapper around Cutadapt and FastQC to consistently apply adapter and quality trimming to FastQ files, with extra functionality for Reduced Representation Bisulfite Sequencing data. | Automate, quality, adapter, trimming, remove, biased, methylation, position, RRBS, reduced, representation, bisulfite, data, sequence, wrapper, bio.tools |
is listed by: OMICtools is listed by: bio.tools is listed by: Debian has parent organization: Babraham Institute works with: cutadapt |
Free, Available for download, Freely available | biotools:trim_galore, OMICS_01096, SCR_016946 | https://github.com/FelixKrueger/TrimGalore, https://bio.tools/trim_galore, https://sources.debian.org/src/trim-galore/ | SCR_011847 | SciCrunch Registry | TrimGalore | 2026-10-24 12:49:57 | 7582 | ||||||
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AidData Resource Report Resource Website 10+ mentions |
AidData (RRID:SCR_010480) | AidData | data or information resource, database, portal | Portal of information about international economic development assistance, dating back to 1947, that includes a database of nearly one million past and present aid activities around the world, aid information management services and tools, data visualization technologies, and research designed to increase understanding of development finance. AidData is searchable by topic such as disaster prevention, energy supply, water supply or reconstruction relief. You may also search by specific regions including Africa, Europe, America, Asia, or Oceania. | economic assistance, economic development, economic, development | is listed by: re3data.org | Acknowledgement requested, The community can contribute to this resource | nlx_157754, r3d100010841 | SCR_010480 | SciCrunch Registry | AidData - Open Data for International Development | 2026-10-24 12:49:56 | 24 | |||||||
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Alaska Ocean Observing System Resource Report Resource Website |
Alaska Ocean Observing System (RRID:SCR_010481) | AOOS | data or information resource, database, portal | Portal for ocean and coastal observations data. They address regional and national needs for ocean information, gather specific data on key coastal and ocean variables, and ensure timely and sustained dissemination and availability of these data. . AOOS programmatic focus areas are: * Safe marine operations * Coastal hazard mitigation * Tracking ecosystem and climate trends * Monitoring water quality | coastal ecology, marine ecology, oceanography, coast, ocean, alaska, marine, ecosystem |
is listed by: re3data.org has parent organization: Integrated Ocean Observing System |
nlx_157756, r3d100010962 | SCR_010481 | SciCrunch Registry | AOOS - Alaska Ocean Observing System | 2026-10-24 12:49:56 | 0 | ||||||||
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John Hopkins University, In-Vivo Cellular Molecular Imaging Center Resource Report Resource Website |
John Hopkins University, In-Vivo Cellular Molecular Imaging Center (RRID:SCR_013198) | data or information resource, job resource, organization portal, portal | The vision of the JHU ICMIC is to combine state-of-the-art imaging capabilities with powerful molecular biology techniques to define strategies with intent to cure. It has drawn upon its human resources at JHU to create a center consisting of a multidisciplinary group of premier individuals with diverse skills focused on translating molecular capabilities into imaging possibilities with the single purpose of understanding and curing cancer. Nearly all of the investigators participating in this ICMIC have interactive collaborative projects with one or more of the other investigators. The synergism generated by the collective skills of this unique group of individuals will lead to significant advances in the understanding of cancer and its treatment. The JHU ICMIC structure consists of four interactive and closely related research components focused on hypoxia, HIF-1, and exploiting the hypoxia response element to target cancer cells through choline kinase inhibition. These research components are anchored by the participation of world renowned expertise in HIF-1. The research components utilize MR, PET and Optical Imaging technology to understand cancer vascularization, invasion and metastasis, to achieve effective cancer therapy. The center has selected developmental projects which are highly relevant to the goals of the ICMIC and interactive with the research components. Five resources devoted to adminstration, molecular biology, imaging, probes, and translational application provide the infrastructure to support the research activities of the ICMIC. Research Components in the JHU ICMIC: - Combining Anti-angiogenic therapy with siRNA targeting of choline kinase. - Imaging the Role of HIF-1 in Breast Cancer Progression - Imaging and Targeting Hypoxia in Solid Tumors - Molecular and Functional Imaging of the HER-2/neu Receptor The following are developmental projects currently taking place in ICMIC 1. Receptor imaging using nonparamagnetic MRI contrast agents (2003) 2. New imaging agents for prostate cancer (2003) 3. Non-invasive monitoring of therapeutic effect of siRNA-mediated radiation sensitization in human prostate cancer xenografts (2003) 4. Imaging of the endothelin receptor in cancer (2003) 5. Imaging studies of c-myc regulation of tumor metabolism (2003) 6. Imaging studies of anti-tumorigenic effects of anti-oxidants in vivo (2005) 7. Molecular Imaging with Magnetic Resonance Microsystems (2005) 8. Endogenous angiogenesis inhibitors (2005) 9. MR imaging and spectroscopy in detection and localization of prostate cancer: a prospective trial in patients undergoing cystoprostatectomy and radical prostatectomy. (2005) 10. A versatile visualization system for the analysis of multi-modality and multidimensional cancer imaging (2007) 11. Non-invasive imaging of CXCR4 expression in breast cancer (2007) | endogenous, endothelin, anti-angiogenic, anti-oxidant, anti-tumorigenic, biology, breast, cancer, cell, choline kinase, c-mys, cystoprostatectomy, hif-1, human, hypoxia, inhibition, metabolism, microsystem, molecular, mr, mri, optical imaging, pet, prostate, prostatectomy, radial, receptor, sirna, spectroscopy, technique, technology, tumor, vascularization, xenograft | has parent organization: Johns Hopkins University; Maryland; USA | nif-0000-10273 | SCR_013198 | SciCrunch Registry | JHU ICMIC | 2026-10-24 12:49:58 | 0 | |||||||||
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German Research Foundation Resource Report Resource Website 500+ mentions |
German Research Foundation (RRID:SCR_012420) | DFG | funding resource, government granting agency | German research awards.Central self governing research funding organisation in Germany. Serves sciences and humanities and promotes research at universities and non-university research institutions. The focus is on funding projects developed by academic community. | is related to: LEAD-DBS | SCR_012946, nlx_156839 | SCR_012420 | SciCrunch Registry | DFG, German Science Foundation, Heinz Maier-Leibnitz Prizes, Deutsche Forschungsgemeinschaft | 2026-10-24 12:49:57 | 564 | |||||||||
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JISC Resource Report Resource Website 50+ mentions |
JISC (RRID:SCR_011331) | data or information resource, funding resource, government granting agency, portal | Joint Information Systems Committee (JISC) is the UK''s expert on information and digital technologies for education and research. JISC inspires UK colleges and universities in the innovative use of digital technologies, helping to maintain the UK''s position as a global leader in education. JISC helps institutions make best use of technology to manage all aspects of their business. JISC provides access to the world-class Janet (UK) network, quality digital resources and a range of specialist advisory services. JISC provides: * A world-class network - JANET * Access to electronic resources * New environments for learning, teaching and research * Guidance on institutional change * Advisory and consultancy services * Regional support - JISC RSCs Partnerships JISC develops partnerships to enable the UK education and research communities to engage in national and global collaborations to overcome the challenges of delivering world-class ICT solutions and services. Funding Opportunities JISC funds a wide range of infrastructure, services, innovative projects and studies. A large number of these originate from a successful response to a grant funding call (previously known as a JISC Circular), inviting eligible HE and FE institutions to bid for project funding. JISC also procures other activities (usually studies such as an evaluation or market research), through invitations to tender which are available to other organizations to bid against. JISC is the name of our organization. Historically, it stood for Joint Information Systems Committee. |
is parent organization of: JISC Blog is parent organization of: Webtracks |
nlx_23596 | SCR_011331 | SciCrunch Registry | Joint Information Systems Committee | 2026-10-24 12:49:57 | 59 | ||||||||||
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National Association of Science Writers Resource Report Resource Website 1+ mentions |
National Association of Science Writers (RRID:SCR_014929) | NASW | data or information resource, group, portal | Association whose goal is to foster the spread of accurate scientific information. | association, group, portal, writing, sciences, forum | Paid membership | SCR_014929 | SciCrunch Registry | National Association of Science Writers (NASW) | 2026-10-24 12:50:00 | 2 | |||||||||
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NIH StrokeNet Resource Report Resource Website |
NIH StrokeNet (RRID:SCR_014648) | data or information resource, portal | NIH network designed to follow and help conduct clinical trials and research studies investigating acute stroke treatment, stroke prevention, and stroke recovery and rehabilitation. Clinical trials are listed once they are reviewed, approved, and ready for volunteer recruitment. | stroke, network, portal, nigh, clinical trial, acute stroke treatment, stroke prevention, stroke recovery, stroke rehabilitation |
is affiliated with: Medical University of South Carolina; South Carolina; USA is affiliated with: University of Cincinnati; Ohio; USA |
Public | SCR_014648 | SciCrunch Registry | NIH Strokenet, Strokenet, StrokeNet | 2026-10-24 12:49:59 | 0 | |||||||||
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Cancer Cell Line Encyclopedia Resource Report Resource Website 50+ mentions |
Cancer Cell Line Encyclopedia (RRID:SCR_013836) | CCLE | data or information resource, database, portal, project portal | A collaborative project between the Broad Institute and the Novartis Institutes for Biomedical Research and its Genomics Institute of the Novartis Research Foundation, with the goal of conducting a detailed genetic and pharmacologic characterization of a large panel of human cancer models. The CCLE also works to develop integrated computational analyses that link distinct pharmacologic vulnerabilities to genomic patterns and to translate cell line integrative genomics into cancer patient stratification. The CCLE provides public access to genomic data, analysis and visualization for about 1000 cell lines. | cancer, cell line, human, human cancer model, genetic, portal, database, FASEB list |
is related to: Broad Institute is related to: Cancer Research Data Commons |
DOI:10.1038/nature11003 | Public | r3d100011819 | SCR_013836 | SciCrunch Registry | 2026-10-24 12:49:58 | 95 | |||||||
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Florida ExpertNet Resource Report Resource Website 1+ mentions |
Florida ExpertNet (RRID:SCR_013959) | data or information resource, portal | A portal that connects users to reserch expertise and resources within Florida's universities. Users can search for experts (principal investigators), funded research projects, centers and institutes, technology licensing opportunities, speakers, and instructional programs. | portal, Florida universities, Florida |
lists: Florida Agricultural and Mechanical University; Florida; USA lists: Florida State University; Florida; USA lists: University of Florida; Florida; USA lists: University of Miami; Florida; USA lists: University of South Florida; Florida; USA is listed by: Connected Researchers is related to: Connected Researchers |
Free, Public | SCR_013959 | SciCrunch Registry | ExpertNet | 2026-10-24 12:49:58 | 1 | |||||||||
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Rare Kidney Stone Consortium (RKSC) Resource Report Resource Website |
Rare Kidney Stone Consortium (RKSC) (RRID:SCR_014413) | RKSC | data or information resource, organization portal, portal | An organization of various participants and independent efforts representing four major diseases of hereditary nephrolithiasis. The Consortium facilitates cooperative exchange of information and resources among investigators, clinicians, patients, and researchers in order to improve care and outcomes for patients with rare stone diseases. The consortium promotes ready availability of diagnostic testing, pooling of clinical experiences, and availability of tissue banks in order to advance the science. | consortium, organization portal, hereditary nephrolithiasis, collaboration, rare kidney stone, rare stone disease |
is listed by: NIDDK Research Resources is listed by: NIDDK Information Network (dkNET) |
SCR_014413 | SciCrunch Registry | Rare Kidney Stone Consortium | 2026-10-24 12:49:59 | 0 | |||||||||
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Predicting Language Outcome and Recovery After Stroke (PLORAS) Resource Report Resource Website |
Predicting Language Outcome and Recovery After Stroke (PLORAS) (RRID:SCR_014498) | data or information resource, portal, project portal | A research project investigating the difficulties of recovering language after stroke (aphasia). The overall aim of the study is to give future stroke survivors accurate predictions of their aphasia recovery by creating clinical tools and discerning why some patients recover from aphasia better than others. | stroke, aphasia, language, project portal, aphasia recovery, language outcome, recovery prediction | Aphasia, Stroke | Wellcome Trust ; Stroke Association |
Public | SCR_014498 | SciCrunch Registry | 2026-10-24 12:49:59 | 0 |
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