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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | ||||||||||||||
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EQUATOR Network Resource Report Resource Website 1000+ mentions |
EQUATOR Network (RRID:SCR_012861) | data or information resource, organization portal, portal | The EQUATOR Network is an international initiative that seeks to enhance reliability and value of medical research literature by promoting transparent and accurate reporting of research studies. This goal will be achieved through: raising awareness of the crucial importance of good reporting of research becoming the recognised global centre providing resources, education and training relating to the reporting of health research and use of reporting guidelines assisting in the development, dissemination and implementation of reporting guidelines monitoring the status of the quality of reporting across health research literature conducting research relating to the quality of reporting The EQUATOR Network Resource Centre provides up-to-date resources related to health research reporting mainly for: authors of research articles journal editors and peer reviewers reporting guideline developers Other users that benefit from the knowledge of principles of good research reporting include representatives of research funders, research ethics committee members, individuals and organisations involved in research education. The resources on our website are regularly updated (see the date of the last update at the foot of each page). Sponsor. Core programme funding for 2007 - 2013 NHS National Library for Health NHS National Institute for Health Research NHS National Knowledge Service UK Medical Research Council Canadian Institutes of Health Research Scottish Chief Scientist Office Pan American Health Organization | nif-0000-30525 | SCR_012861 | SciCrunch Registry | EQUATOR | 2026-10-24 12:49:58 | 1083 | |||||||||||
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INIA19 Primate Brain Atlas Resource Report Resource Website 1+ mentions |
INIA19 Primate Brain Atlas (RRID:SCR_009498) | INIA19 Primate Brain Atlas | atlas, data or information resource, reference atlas | Primate brain atlas created from over 100 structural MR scans of 19 rhesus macaque animals. The atlas currently comprises high-resolution T1-weighted average MR images with and without skull stripping, tissue probability maps, and a detailed parcellation map based on the NeuroMaps atlas. | atlas data, magnetic resonance, nifti, neuromaps, brain atlas, mri, minimum-deformation template |
is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) is related to: BrainInfo has parent organization: Integrative Neuroscience Initiative on Alcoholism |
PMID:23230398 | Creative Commons Attribution License | nlx_155646 | SCR_009498 | SciCrunch Registry | 2026-10-24 12:49:55 | 4 | |||||||
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Graphtools Resource Report Resource Website 1+ mentions |
Graphtools (RRID:SCR_009490) | Graphtools | data processing software, software application, software resource | A set of MATLAB scripts for analysis of networks derived from neuroimaging data. Some of these scripts are entirely original, while some are adapted (or just copied) from the Brain Connectivity Toolbox (https://sites.google.com/a/brain-connectivity-toolbox.net/bct) The source code is available via git: git clone ssh://user | magnetic resonance, matlab |
is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) is related to: Brain Connectivity Toolbox |
BSD License | nlx_155638 | SCR_009490 | SciCrunch Registry | 2026-10-24 12:49:55 | 4 | ||||||||
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Argonne National Laboratory Labs and Facilities Resource Report Resource Website 1+ mentions |
Argonne National Laboratory Labs and Facilities (RRID:SCR_011062) | Argonne Labs & Facilities, Argonne Labs and Facilities | data or information resource, portal | Argonne National Laboratory, located just outside of Chicago, is one of the U.S. Department of Energy''s largest national laboratories for scientific and engineering research to solve most important challenges in energy, environment and national security. Programmatic activities cover all aspects of innovation ecology including basic research, technology development and prototype development and testing. We regularly work with industry through exclusive licensing, joint research and variety of other mechanisms to transfer our inventions to marketplace. |
is listed by: ScienceExchange is related to: UChicago IGSB Next Generation Sequencing Core has parent organization: Argonne National Laboratory |
SciEx_9914 | http://www.scienceexchange.com/facilities/argonne-national-laboratory | SCR_011062 | SciCrunch Registry | Argonne National Laboratory Labs & Facilities | 2026-10-24 12:49:57 | 2 | ||||||||
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RA MAP Resource Report Resource Website |
RA MAP (RRID:SCR_010492) | data or information resource, organization portal, portal | RA MAP is a public-private collaborative project into early Rheumatoid Arthritis (RA). Our goal is to: identify the key predictors of clinical response and remission in RA patients, and identify those individuals at high risk of developing RA. By understanding the human immune system in RA through the study of biological samples from RA patients we plan to develop an ''immunological toolkit'' measuring the immune status of healthy individuals and patients. | uses: eTRIKS | nlx_158038 | SCR_010492 | SciCrunch Registry | 2026-10-24 12:49:57 | 0 | |||||||||||
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Omics Discovery Index Resource Report Resource Website 10+ mentions |
Omics Discovery Index (RRID:SCR_010494) | OmicsDI, DDI, DDICC | data or information resource, database, portal | Portal for dataset discovery across a heterogeneous, distributed group of transcriptomics, genomics, proteomics and metabolomics data resources. These resources span eight repositories in three continents and six organisations, including both open and controlled access data resources. | dataset search, knowledge framework, knowledge discovery |
is affiliated with: MetabolomeXchange is affiliated with: ProteomeXchange has parent organization: University of California at San Diego; California; USA is parent organization of: Integrated Datasets |
NIA 1U24AI117966-01; NIGMS 1U54GM114833-01 |
Free, Public | nlx_158507, SCR_014747 | SCR_010494 | SciCrunch Registry | Omics Discovery Index (OmicsDI) | 2026-10-24 12:49:56 | 33 | ||||||
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Subread Resource Report Resource Website 1000+ mentions |
Subread (RRID:SCR_009803) | data processing software, software application, software resource | Software package for high-performance read alignment, quantification and mutation discovery.General purpose read aligner which can be used to map both genomic DNA-seq reads and RNA-seq reads. Subread aligner as fast, accurate and scalable read mapping by seed-and-vote.These programs were also implemented in Bioconductor R package Rsubread. | read alignment, DNA-seq reads mapping, RNA-seq reads mapping, mutation discovery, , bio.tools |
is listed by: OMICtools is listed by: Debian is listed by: bio.tools is related to: Rsubread has parent organization: University of Melbourne; Victoria; Australia |
Australian Government ; Australian National Health and Medical Research Council ; Victorian State Government Operational Infrastructure Support |
PMID:23558742 | Free, Freely available | OMICS_01255, biotools:subread | https://bio.tools/subread, https://sources.debian.org/src/subread/ | SCR_009803 | SciCrunch Registry | 2026-10-24 12:49:56 | 2138 | ||||||
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resting-state pediatric imaging template Resource Report Resource Website |
resting-state pediatric imaging template (RRID:SCR_009647) | resting-state pediatric imaging template | atlas, data or information resource, reference atlas | Group ICA (Independent Component Analysis) was used to generate spatial templates for 12 common resting-state networks in 62 typically-developing children, ages 9-15. They have made these available for those that will find them useful for masking and spatial template matching procedures. Basic demographic data on the sample is provided along with the protocol used to generate the templates. | analyze, atlas data, magnetic resonance, child, resting-state, pediatric, adolescent | is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) | Public Domain | nlx_155978 | SCR_009647 | SciCrunch Registry | 2026-10-24 12:49:56 | 0 | ||||||||
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factory t1 dti Resource Report Resource Website |
factory t1 dti (RRID:SCR_009523) | factory_t1_dti | data processing software, image analysis software, software application, software resource | Tools to make easier on using spm, pipedream, dti-tk, and other softwares to analyze t1 or dti images. | magnetic resonance, analyze, t1, dti | is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) | nlx_155684 | SCR_009523 | SciCrunch Registry | factory t1 dti | 2026-10-24 12:49:56 | 0 | ||||||||
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GRETNA Resource Report Resource Website 100+ mentions |
GRETNA (RRID:SCR_009487) | GRETNA | data processing software, software application, software resource | A graph theoretical network analysis toolbox which allows researchers to perform comprehensive analysis on the topology of brain connectome by integrating the most of network measures studied in current neuroscience field. | computational neuroscience, eeg, meg, electrocorticography, magnetic resonance, pet, spect |
is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) is affiliated with: Functional Connectivity Analysis Tool for near-infrared spectroscopy data |
GNU General Public License | nlx_155634 | SCR_009487 | SciCrunch Registry | 2026-10-24 12:49:56 | 493 | ||||||||
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Generalized Covariance Analysis Resource Report Resource Website 1+ mentions |
Generalized Covariance Analysis (RRID:SCR_009488) | gCVA | data processing software, image analysis software, software application, software resource | A platform for any Principal Component Analysis (PCA)-based analysis on functional neuroimaging data (PET and fMRI). Includes: * Ordinal Trend Canonical Variance Analysis for parametric designs (C. Habeck et al. A New Approach to Spatial Covariance Modeling of Functional Brain Imaging Data: Ordinal Trend Analysis. Neural Computation 2005; 17: 1602-1645) * Partial Least Squares for any design matrix * Subprofile Scaling Model for cross-sectional designs (JR. Moeller, Strother SC. A regional covariance approach to the analysis of functional patterns in positron emission tomographic data.J Cereb Blood Flow Metab. 1991 Mar;11(2):A121-35.) | magnetic resonance, pet, spect, fmri | is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) | GNU General Public License | nlx_155635 | SCR_009488 | SciCrunch Registry | Generalized Covariance Analysis (gCVA) | 2026-10-24 12:49:55 | 9 | |||||||
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IBDREG Resource Report Resource Website |
IBDREG (RRID:SCR_013127) | software application, software resource | Software package in S-PLUS and R to test genetic linkage with covariates by regression methods with response IBD sharing for relative pairs. Account for correlations of IBD statistics and covariates for relative pairs within the same pedigree. (entry from Genetic Analysis Software) | gene, genetic, genomic, r/s-plus | is listed by: Genetic Analysis Software | nlx_154588, SCR_009366, nlx_154407 | http://mayoresearch.mayo.edu/mayo/research/schaid_lab/software.cfm | SCR_013127 | SciCrunch Registry | R/IBDREG | 2026-10-24 12:49:57 | 0 | ||||||||
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GAMMA Resource Report Resource Website 500+ mentions |
GAMMA (RRID:SCR_009484) | GAMMA | data processing software, image analysis software, software application, software resource | GAMMA suite is an open-source cross-platform data mining software package designed to analyze neuroimaging data. A neuroimaging study often focuses on biomarker detection and classification. We designed and implemented a Bayesian, multivariate, nonparametric suite of algorithms for analyzing neuroimaging data. The GAMMA suite can be used for brain morphometric analysis, lesion-deficit analysis, and functional MR data analysis. | reusable library, analyze, c, c++, console (text based), computed tomography, cygwin, hp-ux, linux, macos, microsoft, modeling, magnetic resonance, nifti, pet, spect, posix/unix-like, quantification, statistical operation, volumetric analysis, win32 (ms windows), windows, neuroimaging | is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) | GNU General Public License | nlx_155632 | SCR_009484 | SciCrunch Registry | GAMMA Suite | 2026-10-24 12:49:55 | 692 | |||||||
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National Institute for Health and Care Excellence Resource Report Resource Website 500+ mentions |
National Institute for Health and Care Excellence (RRID:SCR_012957) | data or information resource, portal | An international team that works on a fee-for-service basis with policy makers and clinicians around the world to promote evidence-based decision making in healthcare. | nlx_156849 | SCR_012957 | SciCrunch Registry | 2026-10-24 12:49:57 | 506 | ||||||||||||
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Oak Ridge National Laboratory Resource Report Resource Website 10+ mentions |
Oak Ridge National Laboratory (RRID:SCR_011475) | ORNL | data or information resource, organization portal, portal | A multiprogram science and technology laboratory managed for the U.S. Department of Energy by UT-Battelle, LLC, to deliver scientific discoveries and technical breakthroughs that will accelerate the development and deployment of solutions in clean energy and global security, and in doing so create economic opportunity for the nation. Scientists and engineers at ORNL conduct basic and applied research and development to create scientific knowledge and technological solutions that increase the availability of clean, abundant energy and restore and protect the environment; and contribute to national security. ORNL also performs other work for the Department of Energy, including isotope production, information management, and technical program management, and provides research and technical assistance to other organizations. | multiprogram, department of energy, clean energy, global security |
is related to: ScienceExchange is parent organization of: AdaptiveCrawler is parent organization of: Computational Biology at ORNL is parent organization of: ORNL DAAC Data Product Citation Policy is parent organization of: Carbon Dioxide Information Analysis Center is parent organization of: Prodigal |
Available to the research community | Wikidata: Q714439, grid.135519.a, nlx_149160, Crossref funder ID: 100006228, ISNI: 0000 0004 0446 2659 | https://ror.org/01qz5mb56 | SCR_011475 | SciCrunch Registry | Clinton Laboratories | 2026-10-24 12:49:57 | 13 | ||||||
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DSI Studio Resource Report Resource Website 500+ mentions |
DSI Studio (RRID:SCR_009557) | DSI Studio | data processing software, image analysis software, software application, software resource | A software for diffusion MR images analysis. The provided functions include reconstruction (DTI, QBI, DSI, and GQI), deterministic fiber tracking, and 3D visualization. It has a window-based interface and operates on Microsoft Windows system. | analyze, c++, console (text based), dicom, diffusion mr fiber tracking, diffusion spectrum, fiber tracking, image reconstruction, linux, microsoft, modeling, magnetic resonance, nifti, posix/unix-like, q-ball, quantification, super tensor, tensor metric, tractography, visualization, win32 (ms windows), windows, coregistration, analysis |
is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) has parent organization: Carnegie Mellon University; Pennsylvania; USA |
BSD License | nlx_155737 | http://www.nitrc.org/projects/dsistudio | SCR_009557 | SciCrunch Registry | 2026-10-24 12:49:56 | 694 | |||||||
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BCube A Broker Framework for Next Generation Geoscience Resource Report Resource Website |
BCube A Broker Framework for Next Generation Geoscience (RRID:SCR_012765) | BCube | data or information resource, portal | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on October 17,2023. Project that brings together an internationally recognized team of geo- and social-scientists, cyberinfrastructure experts and educators to explore how expert systems can mediate interactions and improve access between scientific fields. To address complex Earth system issues such as climate change and water resources, geoscientists must work across disciplinary boundaries, which requires them to access data outside of their fields. The initial focus is on hydrology, oceans, polar and weather, with the intent to make the technology applicable and available to all the geosciences. The team''s social scientists and educators will research how technology can improve knowledge exchange between scientific communities. | usgin:non-geographic, hydrology, oceans, polar, weather, geoscience |
is listed by: CINERGI has parent organization: University of Colorado; Colorado; USA |
NSF Earthcube Building Block | THIS RESOURCE IS NO LONGER IN SERVICE | rid_000030 | SCR_012765 | SciCrunch Registry | 2026-10-24 12:49:58 | 0 | |||||||
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DPABI Resource Report Resource Website 1000+ mentions |
DPABI (RRID:SCR_010501) | DPABI | data processing software, software application, software resource, software toolkit | Software toolbox for data processing and analysis of brain imaging, evolved from DPARSF (Data Processing Assistant for Resting-State fMRI). | neuroimaging, resting-state fmri, brain, analysis, fmri |
uses: DPARSF has parent organization: RFMRI.ORG |
GNU General Public License | nlx_158469 | SCR_010501 | SciCrunch Registry | DPABI: a toolbox for Data Processing & Analysis of Brain Imaging, toolbox for Data Processing and Analysis of Brain Imaging | 2026-10-24 12:49:56 | 1384 | |||||||
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Biobanc USA Resource Report Resource Website |
Biobanc USA (RRID:SCR_010622) | BiobancUSA.PNG | biomaterial supply resource, cell repository, material resource | BioBancUSA is a leading biotechnology company specializing in white blood cell collection, processing, cryopreservation and storage service. BioBancUSA, a private company headquartered in Monterey, California, is the exclusive licensee of the original patent for the collection, processing and cryopreservation technology of white blood cells, giving you the assurance of both technical integrity and legal legitimacy that you can count on. BioBancUSA is dedicated to providing our clients with the highest quality immune cell preservation for their future medical use. We are committed to the most advanced technology, exceptional, personalized service and leading-edge innovation to benefit our customers, health care providers, shareholders and employees. | is listed by: One Mind Biospecimen Bank Listing | nlx_56364 | SCR_010622 | SciCrunch Registry | 2026-10-24 12:49:56 | 0 | ||||||||||
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Rutgers Cell and DNA Repository Resource Report Resource Website 10+ mentions |
Rutgers Cell and DNA Repository (RRID:SCR_010624) | RUCDR | biomaterial supply resource, cell repository, material resource | RUCDR is a biobank and a service organization that maintains human blood, serum, saliva, tissue and the genetic products derived from those. Services include technical consultation and logistical support for biobanking. Researchers can order biomaterials and apply for phenotypic / genotypic data. | genetics, disease, phenotypic data, genotypic data, cell, dna, blood, cell line |
is listed by: One Mind Biospecimen Bank Listing is related to: NIMH Repository and Genomics Resources has parent organization: Rutgers University; New Jersey; USA is parent organization of: NIMH Stem Cell Center |
Researchers can order biomaterials and apply for phenotypic / genotypic data, Depending on the project. | nlx_60990 | SCR_010624 | SciCrunch Registry | Rutgers Cell DNA Repository, Rutgers University Cell DNA Repository | 2026-10-24 12:49:56 | 37 |
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The NIDDK Information Network (dkNET) serves the needs of basic and clinical investigators by providing seamless access to large pools of data and research resources relevant to the mission of The National Institute of Diabetes Digestive and Kidney Diseases (NIDDK). dkNET is hosted at University of California San Diego, and is supported by NIH NIDDK grant U24DK097771.
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