Searching the RRID Resource Information Network
Are you sure you want to leave this community? Leaving the community will revoke any permissions you have been granted in this community.
SciCrunch Registry is a curated repository of scientific resources, with a focus on biomedical resources, including tools, databases, and core facilities - visit SciCrunch to register your resource.
| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
ProteomicsDB Resource Report Resource Website 100+ mentions |
ProteomicsDB (RRID:SCR_015562) | data or information resource, database | Database for the identification of the human proteome and its use across the scientific community. Users can browse proteins and chromosomes and contribute to the data repository. | human proteome, human proteomics, proteomics database, human proteomics database, bio.tools, FASEB list |
is listed by: Debian is listed by: bio.tools is related to: ProteomeTools has parent organization: Technical University of Munich; Bavaria; Germany |
PMID:24870543 | The research community can contribute to this resource | r3d100013408, biotools:proteomicsdb | https://bio.tools/proteomicsdb, https://doi.org/10.17616/R31NJMU8 | SCR_015562 | SciCrunch Registry | 2026-10-17 01:34:18 | 180 | |||||||
|
Schizo-Pi Resource Report Resource Website 1+ mentions |
Schizo-Pi (RRID:SCR_014599) | data or information resource, database | An interactome of protein-protein interactions related to schizophrenia, it contains novel PPIs predicted with the HiPPIP model. Schizophrenia associated genes are gathered from GWAS genes, historical candidates, and OMIM. Members of the scientific community can also suggest genes to add to the interactome. | schizophrenia, protein protein interaction, interactome, novel ppi, novel protein protein interaction |
uses: OMIM uses: GWAS: Catalog of Published Genome-Wide Association Studies |
PMID:27336055 DOI:10.1038/npjschz.2016.12 |
Acknowledgement requested | SCR_014599 | SciCrunch Registry | Schizophrenia Protein Interactome, Schizo Pi | 2026-10-17 01:35:21 | 4 | ||||||||
|
Metabolomics Workbench Metabolite Database Resource Report Resource Website |
Metabolomics Workbench Metabolite Database (RRID:SCR_014633) | data or information resource, database | A database which contains structures and annotations of biologically relevant metabolites from public repositories such as LIPID MAPS, ChEBI, HMDB, PubChem, and KEGG. Users can search for molecular structure based on substructure, text, or mass. | database, metabolomics, metabolite, structure, annotation | has parent organization: Metabolomics Workbench | Public | SCR_014633 | SciCrunch Registry | UCSD Metabolomics Workbench Metabolite Database, Metabolomics Workbench Database | 2026-10-17 01:34:17 | 0 | |||||||||
|
Food Repo Resource Report Resource Website 1+ mentions |
Food Repo (RRID:SCR_016097) | data or information resource, database | Database of barcoded food products. Food Repo provides data that is on the package of each product, and collects its data via food distributors and volunteer contributors. | food, diet, barcode, database, switzerland | Kristian Gerhard Jebsen Foundation | Freely available, Public | SCR_016097 | SciCrunch Registry | The Open Food Repo, OpenFood | 2026-10-17 01:33:40 | 2 | |||||||||
|
499 fROI atlas Resource Report Resource Website 50+ mentions |
499 fROI atlas (RRID:SCR_014756) | atlas, data or information resource | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on June 29,2023. Atlas of functional ROIs (fROIs) containing 499 regions, with extensive gray matter coverage. Atlases are available for download directly from the website. | roi, dmn, fmri, atlas, functional roi, gray matter, grey matter, brain | is related to: 90 fROI atlas | PMID:26068849 | THIS RESOURCE IS NO LONGER IN SERVICE. | SCR_014756 | SciCrunch Registry | Willard atlas | 2026-10-17 01:33:36 | 77 | ||||||||
|
Teaching Commons Resource Report Resource Website |
Teaching Commons (RRID:SCR_014638) | data or information resource, database | A library of open source teaching and educational resources for professors and students. It includes resources such as textbooks, lesson plans, multimedia, and lectures from participating universities and institutions. Subject areas include the life sciences, the arts and humanities, law, social and behavioral sciences, medicine and health, engineering, education, the physical sciences, and mathematics. Users can share their own work and adopt others' on the platform. | library, educational, teaching, student, textbook, course material, lesson plan, multimedia, lecture, open source | is affiliated with: Digital Commons Network | Open source, Freely available | SCR_014638 | SciCrunch Registry | 2026-10-17 01:33:36 | 0 | ||||||||||
|
nPOD TCR/BCR Search Resource Report Resource Website 1+ mentions |
nPOD TCR/BCR Search (RRID:SCR_015851) | data or information resource, database | Database of sequence data generated from high-throughput immunosequencing of the TCR beta chain (TRB) and B cell receptor (BCR) immunoglobulin heavy chain (IGH). This data comes from cells from NPOD donors. | tcr, bcr, beta chain, tcr beta chain, b cell receptor, immunosequencing, immunoglobulin heavy chain, igh | Adaptive Biotechnologies ; Helmsley Charitable Trust ; Juvenile Diabetes Research Foundation 1-2008-994; Juvenile Diabetes Research Foundation 2-2012-280; Juvenile Diabetes Research Foundation 25-2013-268; Juvenile Diabetes Research Foundation 27-2012-450; NIAID P01 AI42288; NIDDK R01 DK096492; NIDDK R01 DK099317; NIDDK R01 DK106191; NIDDK U01 DK104147; NIDDK U01 DK104162; NIDDK UC4 DK104194 |
PMID:27942583 | Freely available, Acknowledgement requested | SCR_015851 | SciCrunch Registry | TCRBCR Search, TCR/BCR Search, nPOD TCRBCR Search | 2026-10-17 01:33:37 | 3 | ||||||||
|
ImmunoBase Resource Report Resource Website 10+ mentions |
ImmunoBase (RRID:SCR_014642) | data or information resource, database | Web based resource focused on the genetics and genomics of immunologically related human diseases. Their mission is to provide a curated and integrated set of datasets and tools to support and promote research in this area. The current focus of the site is to integrate and curate summary case/control association statistics from the consortium of 12 diseases originally targeted by the ImmunoChip consortium. | immunology, database, web based, genetics, genomics, immunologically related human diseases, gwas, FASEB list | Juvenile Diabetes Research Foundation Wellcome Trust Diabetes and Inflammation Laboratory | SCR_014642 | SciCrunch Registry | 2026-10-17 01:33:38 | 45 | |||||||||||
|
Diabetes Biobank Brussels Resource Report Resource Website |
Diabetes Biobank Brussels (RRID:SCR_015571) | DBB | biomaterial supply resource, material resource, tissue bank | Non-profit initiative of the Belgian Diabetes Registry (BDR), the Beta Cell Therapy consortium (BCT), the Flemish Center for Medical Innovation (CMI) and the Brussels Institute for Research and Innovation (Innoviris). It aims to support medical research into the epidemiology, prevention, diagnosis and treatment of diabetes. | diabetes, non-profit, epidemiology, disease prevention | Freely Available, Account required, Acknowledgement requested | SCR_015571 | SciCrunch Registry | Diabetes Biobank Brussels (DBB) | 2026-10-17 01:33:39 | 0 | |||||||||
|
MassBank of North America Resource Report Resource Website 100+ mentions |
MassBank of North America (RRID:SCR_015536) | MoNA | data or information resource, database | Metadata-centric, auto-curating repository designed for storage and querying of mass spectral records. It contains metabolite mass spectra, metadata and associated compounds. | mass spectrometry, ms database, mass spectrometry database, mass spectral records, FASEB list | has parent organization: University of California at Davis; California; USA | Available for download, The scientific community can contribute to this resource | r3d100012318 | https://doi.org/10.17616/R3ND3Z | SCR_015536 | SciCrunch Registry | MassBank of North America (MoNA) | 2026-10-17 01:33:37 | 332 | ||||||
|
In vivo - In silico Metabolite Database Resource Report Resource Website |
In vivo - In silico Metabolite Database (RRID:SCR_015537) | IIMDB | data or information resource, database | Database of known biochemical compounds collected from existing biochemical databases, as well as computationally generated human phase I and phase II metabolites of known compounds. | chemical compound database, biochemical compound database, computationally generated chemical compound |
uses: KEGG uses: HMDB uses: DrugBank has parent organization: University of Connecticut; Connecticut; USA |
Account required, License required | SCR_015537 | SciCrunch Registry | In vivo In silico Metabolite Database, In vivo/ In silico Metabolite Database (IIMDB), In vivo/In silico Metabolite Database | 2026-10-17 01:35:24 | 0 | ||||||||
|
ClinGen Resource Report Resource Website 1000+ mentions |
ClinGen (RRID:SCR_014968) | CGR | data or information resource, database | Genomics knowledgebase for clinical relevance of genes and variants for use in research. ClinGen's primary function is to store and share information for the benefit of the scientific community. Laboratory scientists, clinicians, and patients can share and access data. | database, knowledgebase, genomics, healthcare, clinical, FASEB list | is related to: CivicDb | Eunice Kennedy Schriver NICHD ; NHGRI U41 HG006834-01A1; NHGRI U01 HG007437-01; NHGRI U01 HG007436-01; NCI HHSN261200800001E; NCI contract HHSN261200800001E |
PMID:26014595 | Free, Available to the scientific community | SCR_014968 | SciCrunch Registry | Clinical Genome Resource (ClinGen), Clinical Genome Resource | 2026-10-17 01:33:36 | 1153 | ||||||
|
NORD Rare Disease Database Resource Report Resource Website |
NORD Rare Disease Database (RRID:SCR_014573) | data or information resource, database | A database which provides brief introductions of rare diseases. New topics and diseases are added with the help of rare disease medical experts. This is mainly targeted at patients and their families but has useful information for professionals. | nord, rare disease, database, patient, family | Rare disease | Public | SCR_014573 | SciCrunch Registry | 2026-10-17 01:33:38 | 0 | ||||||||||
|
Ultimate Rough Aggregation of Metabolic Map Resource Report Resource Website |
Ultimate Rough Aggregation of Metabolic Map (RRID:SCR_014694) | data or information resource, database | Metabolic pathway map that collects metabolic data gathered from multiple public databases and organizes them in one central location. | database, metabolism, metabolic map, metabolic pathway, aggregation, public database |
uses: KEGG uses: HMDB uses: CHEBI |
Public | SCR_014694 | SciCrunch Registry | An Ultimate Rough Aggregation of Metabolic Map | 2026-10-17 01:33:36 | 0 | |||||||||
|
MicrocircuitDB Resource Report Resource Website |
MicrocircuitDB (RRID:SCR_014577) | data or information resource, database | A database for storing and efficiently retrieving realistic computational models of brain microcircuits and networks. The focus is on microcircuits that are based on experimentally demonstrated properties of neurons and their connectivity. | database, microcircuit, micro circuit, brain, neuron, connectivity |
works with: ModelDB works with: NeuronDB |
Researchers may contribute to this resource | SCR_014577 | SciCrunch Registry | 2026-10-17 01:34:17 | 0 | ||||||||||
|
RepOD Resource Report Resource Website 10+ mentions |
RepOD (RRID:SCR_014697) | data or information resource, database | An online platform for open source data/datasets created, collected or annotated for scientific research of all fields and disciplines. Registered users can share data relating to their research project and view data from other projects. Groups can combine datasets into collections associated with the group, in contrast to individual members of the group hosting their own data. | repository, open source, open data, research data, platform | Open source, Available to the research community, Registration required | r3d100011903 | SCR_014697 | SciCrunch Registry | Repository for Open Data, Repository for Open Data (RepOD) | 2026-10-17 01:35:22 | 12 | |||||||||
|
ROIs selection with a non-graphical user interface Resource Report Resource Website 1+ mentions |
ROIs selection with a non-graphical user interface (RRID:SCR_016352) | application programming interface, data access protocol, software resource | It is non-graphical user interface in MATLAB which relies on keyboard callback functions. Used for analyzing big data sets. | non graphical, user, interface, keyboard, callback, function, analysis, big, data, set | is related to: MATLAB | Free, Available for download, Freely available | https://ptrrupprecht.wordpress.com/2015/06/24/a-simple-non-graphical-user-interface-in-matlab-keyboard-callback-functions/ | SCR_016352 | SciCrunch Registry | 2026-10-17 01:33:40 | 4 | |||||||||
|
Altered States Database Resource Report Resource Website 1+ mentions |
Altered States Database (RRID:SCR_016350) | ASDB | data or information resource, database | Database as an open science framework with a scientific data extracted from scientific literature about various altered states of consciousness assessed with questionnaires. Used to compare what experiences are elicited by different drugs and non-pharmacological methods that induce altered states to help to understand human consciousness functions. Is listed by Neuroimaging Informatics Tools. | altered, state, database, comprised, questionnaire, data, consciousness, neuroscience | is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) | VolkswagenStiftung ; Wikimedia Foundation ; Stifterverband |
DOI:10.17605/OSF.IO/8MBRU | Free, Freely available | http://alteredstatesdb.org/#focus | SCR_016350 | SciCrunch Registry | Altered States Database | 2026-10-17 01:35:27 | 2 | |||||
|
Phi Toolbox Resource Report Resource Website 1+ mentions |
Phi Toolbox (RRID:SCR_015549) | software resource, software toolkit, source code | Toolkit of MATLAB functions for computing integrated information ('phi' or 'Φ') from neural data. The toolbox consists of downloadable codes that perform practical computation. | matlab, integrated information, phi, Φ, neural data, computation | PMID:26796119 PMID:27930289 |
Open Source, Available for download | SCR_015549 | SciCrunch Registry | Φ toolbox, phi toolkit, integrated information matlab toolbox | 2026-10-17 01:35:24 | 1 | |||||||||
|
EGSEA Resource Report Resource Website 50+ mentions |
EGSEA (RRID:SCR_015036) | software resource, software toolkit, source code | Method developed for RNA-sequencing data. EGSEA combines results from twelve algorithms and calculates collective gene set scores to improve the biological relevance of the highest ranked gene sets. | gene set, rna sequencing, analysis method, r package, bio.tools |
is listed by: Debian is listed by: bio.tools is hosted by: Bioconductor |
Victorian State Government Operational Infrastructure Support ; Australian Government NHMRC IRIISS ; NHMRC GNT1050661; NHMRC GNT1045936; NHMRC GNT1057854; NHMRC GNT1104924 |
PMID:27694195 | Free, Available for download | biotools:egsea | https://bio.tools/egsea | SCR_015036 | SciCrunch Registry | Ensemble of Gene Set Enrichment Analyses (EGSEA), Ensemble of Gene Set Enrichment Analyses | 2026-10-17 01:33:39 | 64 |
Can't find your Tool?
We recommend that you click next to the search bar to check some helpful tips on searches and refine your search firstly. Alternatively, please register your tool with the SciCrunch Registry by adding a little information to a web form, logging in will enable users to create a provisional RRID, but it not required to submit.
Welcome to the dkNET Resources search. From here you can search through a compilation of resources used by dkNET and see how data is organized within our community.
You are currently on the Community Resources tab looking through categories and sources that dkNET has compiled. You can navigate through those categories from here or change to a different tab to execute your search through. Each tab gives a different perspective on data.
If you have an account on dkNET then you can log in from here to get additional features in dkNET such as Collections, Saved Searches, and managing Resources.
Here is the search term that is being executed, you can type in anything you want to search for. Some tips to help searching:
If you are logged into dkNET you can add data records to your collections to create custom spreadsheets across multiple sources of data.
Here are the facets that you can filter the data by.
If you have any further questions please check out our FAQs Page to ask questions and see our tutorials. Click this button to view this tutorial again.
The NIDDK Information Network (dkNET) serves the needs of basic and clinical investigators by providing seamless access to large pools of data and research resources relevant to the mission of The National Institute of Diabetes Digestive and Kidney Diseases (NIDDK). dkNET is hosted at University of California San Diego, and is supported by NIH NIDDK grant U24DK097771.
Email: info_at_ dknet.org
