Searching the RRID Resource Information Network
Are you sure you want to leave this community? Leaving the community will revoke any permissions you have been granted in this community.
SciCrunch Registry is a curated repository of scientific resources, with a focus on biomedical resources, including tools, databases, and core facilities - visit SciCrunch to register your resource.
| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
MitoDrome Resource Report Resource Website 1+ mentions |
MitoDrome (RRID:SCR_013474) | data or information resource, database | It has been developed with the aim to annotate the complete set of Drosophila melanogaster nuclear genes encoding for mitochondrial proteins in order to contribute to their functional characterization. The data collected in MitoDrome derive from the comparison of Human mitochondrial proteins available in SWISSPROT vs. the Drosophila genome, ESTs and cDNA sequences available in the FlyBase database. According to the results, each Drosophila gene sharing significant homology with a human mitochondrial protein was classified as a putative Drosophila mitochondrial gene and annotated in MitoDrome. | has parent organization: University of Bari; Bari; Italy | nif-0000-03143 | http://www2.ba.itb.cnr.it/MitoDrome/ | SCR_013474 | SciCrunch Registry | MitoDrome | 2026-10-17 01:35:16 | 5 | |||||||||
|
Neurogenerator Resource Report Resource Website |
Neurogenerator (RRID:SCR_013595) | data or information resource, database | THIS RESOURCE IS NO LONGER IN SERVICE, documented August 19, 2016. A database project for the neuroimaging community NeuroGenerator is a database project funded by the European Commission. The overall purpose is to make databases with data in comparable and compatible formats suited for meta research and for making models of the cerebral cortex of the human brain. Researchers can submit their own raw PET-data and fMRI data to NeuroGenerator. The data are analyzed with the statistical software package FSL. In this way databases are produced of PET and fMRI data in standard anatomical format Data as statistical parametric images in standard anatomical format immediately comparable due to the uniform processing Cytoarchitectural data (from post mortem brains) in standard anatomical format. | has parent organization: European Commission | THIS RESOURCE IS NO LONGER IN SERVICE | nif-0000-00441 | http://www.neurogenerator.org/about.htm | SCR_013595 | SciCrunch Registry | Neurogenerator | 2026-10-17 01:33:35 | 0 | ||||||||
|
Kazusa Arabidopsis data opening site Resource Report Resource Website 1+ mentions |
Kazusa Arabidopsis data opening site (RRID:SCR_013511) | data or information resource, database | This site has been developed by Kazusa DNA Research Institute for the purpose of offering the science community the analyzed sequence data produced by a multi-national Arabidopsis genome sequencing project coordinated by the Arabidopsis Genome Initiatives (AGI). The aim of this service is to enable users to browse the annotated sequence data produced by all the sequencing teams of AGI through an user-friendly graphic display system and search engines. Gene structures proposed on the annotated sequences as well as those predicted by computer programs are presented and each graphic item has a hyperlink to detailed information of the corresponding area. The nucleotide sequence data deposited in GenBank by AGI was downloaded, re-computer-analyzed at Kazusa and parsed results are displayed graphically. | annoated, arabidopsis, dna, genome, sequence | nif-0000-20958 | SCR_013511 | SciCrunch Registry | KAOS | 2026-10-17 01:35:16 | 6 | ||||||||||
|
Preprocessed Connectomes Project Resource Report Resource Website 1+ mentions |
Preprocessed Connectomes Project (RRID:SCR_014162) | PCP | data or information resource, database | A project which systematically preprocess the data from the 1000 Functional Connectomes Project (FCP) and International Neuroimaging Data-sharing Initiative (INDI) and openly share the results. Data is currently hosted in an Amazon Web Services Public S3 Bucket and at NITRC. | database, neuroimaging data, preprocessing |
is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) is affiliated with: 1000 Functional Connectomes Project |
Public, Acknowledgement requested | https://preprocessed-connectomes-project.github.io | SCR_014162 | SciCrunch Registry | 2026-10-17 01:33:35 | 1 | ||||||||
|
Parkinsons Disease Discovery Database Resource Report Resource Website |
Parkinsons Disease Discovery Database (RRID:SCR_014160) | data or information resource, database | THIS RESOURCE IS NO LONGER IN SERVICE, documented Jan. 5, 2016. Tools will be available for biomedical data mining and visualization as well as linkages to Google Maps and other online resources. | parkinson disease, database | is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) | THIS RESOURCE IS NO LONGER IN SERVICE | SCR_014160 | SciCrunch Registry | 2026-10-17 01:34:16 | 0 | ||||||||||
|
Radiometer Resource Report Resource Website 10+ mentions |
Radiometer (RRID:SCR_014772) | material service resource, production service resource, service resource | Commercial organizations which develops, manufactures, and sells solutions and equipment for blood sampling, blood gas analysis, transcutaneous monitoring, and IT management systems under certain brand names. | commercial, blood sampling, blood gas analysis, transcutaneous monitoring, it management | Commercially available | SCR_014772 | SciCrunch Registry | 2026-10-17 01:33:38 | 28 | |||||||||||
|
Zeitz Resource Report Resource Website 100+ mentions |
Zeitz (RRID:SCR_014774) | material service resource, production service resource, service resource | Manufacturer and supplier of the DMZ Universal electrode pullers which produce pipettes and electrodes with a tip diameter down to 0.2 micrometers. | electrode, electrode puller, material service resource, manufacturer, supplier, pipette | Commercially available | SCR_014774 | SciCrunch Registry | Zeitz Instruments, Zeitz-Instruments | 2026-10-17 01:34:17 | 114 | ||||||||||
|
IMACEL Resource Report Resource Website 1+ mentions |
IMACEL (RRID:SCR_015868) | analysis service resource, data analysis service, production service resource, service resource | Artificial intelligence image analysis platform that facilitates life science research. It offers data analysis, processing functions, and security features to accelerate research productivity. | ai, artificial intelligence, research, biological research, life science, image analysis, data analysis, data processing, data security | Free trial available, Commercially available, Account required | SCR_015868 | SciCrunch Registry | 2026-10-17 01:35:25 | 2 | |||||||||||
|
Neural Signal Archive Resource Report Resource Website 1+ mentions |
Neural Signal Archive (RRID:SCR_014810) | data or information resource, database | Public archive of neural signals recorded from various types of cells and sites in neural systems. Any data can be publicly accessed and downloaded, and users can submit their data. | public, archive, data archive, neural signal, neural system, database | Public | SCR_014810 | SciCrunch Registry | 2026-10-17 01:35:23 | 5 | |||||||||||
|
iModel Resource Report Resource Website 1+ mentions |
iModel (RRID:SCR_014811) | data or information resource, database | Database of interactive neural computation computer models at levels ranging from simple linear filters to large-scale networks of spiking units. Interface tools are provided while browsing and exploring models. | database, interactive, model, neural, neural computation | has parent organization: University of Washington; Seattle; USA | Available to the research community, Available for download | SCR_014811 | SciCrunch Registry | 2026-10-17 01:33:38 | 4 | ||||||||||
|
Birmingham Metabolite Library Resource Report Resource Website 10+ mentions |
Birmingham Metabolite Library (RRID:SCR_014666) | data or information resource, database | A collection of experimental 1D and 2D J-resolved NMR spectra of 208 metabolite standards. | metabolomics, database, metabolite, 1d, 2d, j resolved, nmr, spectra | is listed by: Metabolomics Workbench | DOI:10.1007/s11306-011-0347-7 | Publicly available, Account required | SCR_014666 | SciCrunch Registry | 2026-10-17 01:33:36 | 13 | |||||||||
|
MobiDB Resource Report Resource Website 100+ mentions |
MobiDB (RRID:SCR_014542) | data or information resource, database | A database of protein disorder and mobility annotations. The database features three levels of annotation: manually curated data (which are extracted from the DisProt database), indirect data, and predicted data. Additional annotations are included from external sources, including UniProt, Pfam, PDB, and STRING. | database, protein disorder, mobility, annotation, intrinsic protein disorder, bio.tools, FASEB list |
uses: UniProt uses: STRING uses: Research Collaboratory for Structural Bioinformatics Protein Data Bank (RCSB PDB) uses: Pfam is listed by: bio.tools is listed by: Debian has parent organization: University of Padua; Padua; Italy |
Available to the research community | biotools:mobidb | https://bio.tools/mobidb | SCR_014542 | SciCrunch Registry | 2026-10-17 01:34:17 | 145 | ||||||||
|
Crossref EventData Resource Report Resource Website 1+ mentions |
Crossref EventData (RRID:SCR_016281) | data or information resource, database | Database of events about articles that is run by CrossRef. It allows users to view social media mentions, news publication references, annotations, and more. | cross, reference, event, data, mention, social, media | has parent organization: CrossRef | Freely available | SCR_016281 | SciCrunch Registry | Event Data, EventData | 2026-10-17 01:34:18 | 4 | |||||||||
|
Grid-Enabled Measures Database Resource Report Resource Website 1+ mentions |
Grid-Enabled Measures Database (RRID:SCR_016043) | GEM | data or information resource, database | Database that contains behavioral and social science measures organized by theoretical constructs. GEM is designed to enable researchers to use common measures with the goal of exchanging harmonized data. | behavior, social, data, research, data sharing, exchange | NCI Y01 C16006001 | PMID:21521586 | Freely available | SCR_016043 | SciCrunch Registry | GEM Database | 2026-10-17 01:34:18 | 1 | |||||||
|
Research-tested Intervention Programs (RTIPs) Resource Report Resource Website 10+ mentions |
Research-tested Intervention Programs (RTIPs) (RRID:SCR_016042) | RTIPs | data or information resource, database | Database of cancer control interventions and program materials. It is designed to provide program planners and public health practitioners easy and immediate access to research-tested materials. | cancer, control, intervention, prevention, diagnosis, planning, research, program, public, health, bio.tools, FASEB list |
is listed by: bio.tools is listed by: Debian |
cancer | NCI | Freely available, Public | biotools:rtips | https://bio.tools/rtips | SCR_016042 | SciCrunch Registry | Research-tested Intervention Programs | 2026-10-17 01:33:39 | 25 | ||||
|
Lancelet Genome Sequence and Annotation Project Database Resource Report Resource Website 1+ mentions |
Lancelet Genome Sequence and Annotation Project Database (RRID:SCR_014987) | data or information resource, database | Database project to document the genome sequence of the Lancelet, a basal extant chordate. Information provided includes reference haploid genome sequence and annotation data, gene models and function, and integrated information from diploid genome sequence and annotation data. | lancelet, genome annotation, haploid genome, diploid genome, model organism | Available to the research community | SCR_014987 | SciCrunch Registry | 2026-10-17 01:35:23 | 7 | |||||||||||
|
3D-footprint Resource Report Resource Website |
3D-footprint (RRID:SCR_015713) | data or information resource, database | Database of DNA-binding protein structures that is updated with Protein Data Bank complexes. It provides structure-based binding specificities and sequence logos, classification and clusters of protein-DNA interfaces, and downloads/stats. | dna binding protein structure, protein data bank, sequencing, protein-dna interface, bio.tools |
is listed by: Debian is listed by: bio.tools works with: footprintDB |
CSIC 200720I038 | PMID:19767616 | Freely available, Free for academic use, Tutorial available | biotools:3d-footprint | https://bio.tools/3d-footprint | SCR_015713 | SciCrunch Registry | 2026-10-17 01:35:25 | 0 | ||||||
|
SomaDetection Resource Report Resource Website 1+ mentions |
SomaDetection (RRID:SCR_015717) | algorithm resource, software resource, source code | Source code for a machine learning method to detect somas on confocal microscopic images of the Drosophila brain. The method can be applied to the original raw images where the noises are not removed and the number of somas is unknown. | soma detection, drosophilia, confocal microscopic image, machine learning, algorithm, c++ | DOI:10.1007/s12021-017-9342-0 | Free, Available for download | SCR_015717 | SciCrunch Registry | Soma Detection | 2026-10-17 01:33:39 | 1 | |||||||||
|
BloodSpot Resource Report Resource Website 50+ mentions |
BloodSpot (RRID:SCR_015563) | data or information resource, database | Database that provides gene expression profiles of genes and gene signatures in healthy and malignant hematopoiesis and includes data from both humans and mice. In addition to the default plot, which displays an integrated expression plot, two additional levels of visualization are available: an interactive tree showing the hierarchical relationship between the samples, and a Kaplan-Meier survival plot. The database is sub-divided into several datasets that are accessible for browsing. | human gene signature, mouse gene signature, human gene database, mouse gene database, hematopoiesis, blood cell database, FASEB list | has parent organization: University of Copenhagen; Copenhagen; Denmark | Danish Research Council for Strategic Research ; NovoNordisk Foundation |
DOI:10.1093/nar/gkv1101 | Open source | SCR_015563 | SciCrunch Registry | 2026-10-17 01:33:37 | 95 | ||||||||
|
COMPARTMENTS Subcellular localization database Resource Report Resource Website 1+ mentions |
COMPARTMENTS Subcellular localization database (RRID:SCR_015561) | data or information resource, database | Web resource that integrates evidence on protein subcellular localization from manually curated literature, high-throughput screens, automatic text mining, and sequence-based prediction methods. All evidence is mapped to common protein identifiers and Gene Ontology terms, and further unify it by assigning confidence scores that facilitate comparison of the different types and sources of evidence and visualize these scores on a schematic cell. | subcellular localization database | EMBL International PhD Programme 295–2012; Luxembourg Centre for Systems Biomedicine ; Novo Nordisk Foundation Center for Protein Research ; CSIRO Office of the Chief Executive ; CSIRO Computation and Simulation Sciences |
SCR_015561 | SciCrunch Registry | COMPARTMENTS, Compartments Database | 2026-10-17 01:33:39 | 7 |
Can't find your Tool?
We recommend that you click next to the search bar to check some helpful tips on searches and refine your search firstly. Alternatively, please register your tool with the SciCrunch Registry by adding a little information to a web form, logging in will enable users to create a provisional RRID, but it not required to submit.
Welcome to the dkNET Resources search. From here you can search through a compilation of resources used by dkNET and see how data is organized within our community.
You are currently on the Community Resources tab looking through categories and sources that dkNET has compiled. You can navigate through those categories from here or change to a different tab to execute your search through. Each tab gives a different perspective on data.
If you have an account on dkNET then you can log in from here to get additional features in dkNET such as Collections, Saved Searches, and managing Resources.
Here is the search term that is being executed, you can type in anything you want to search for. Some tips to help searching:
If you are logged into dkNET you can add data records to your collections to create custom spreadsheets across multiple sources of data.
Here are the facets that you can filter the data by.
If you have any further questions please check out our FAQs Page to ask questions and see our tutorials. Click this button to view this tutorial again.
The NIDDK Information Network (dkNET) serves the needs of basic and clinical investigators by providing seamless access to large pools of data and research resources relevant to the mission of The National Institute of Diabetes Digestive and Kidney Diseases (NIDDK). dkNET is hosted at University of California San Diego, and is supported by NIH NIDDK grant U24DK097771.
Email: info_at_ dknet.org
