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http://justusrandolph.net/kappa/

Software tool can be used to calculate kappa, chance adjusted measure of agreement, for any number of cases, categories, or raters.

Proper citation: Online Kappa Calculator (RRID:SCR_021770) Copy   

•   Source: SciCrunch Registry
  

https://www.zeiss.com/microscopy/int/products/microscope-software/labscope.html

Software tool for image acquisition using WiFi-enabled Zeiss microscopes. Compatible with Windows PCs and with Apple tablets., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025.

Proper citation: Zeiss LabScope (RRID:SCR_021768) Copy   

•   Source: SciCrunch Registry
  

https://sites.cscc.unc.edu/aric/

Platform for prospective epidemiologic study conducted in four U.S. communities. One of most significant and longest running heart health studies and is the largest study of heart health in African Americans. ARIC investigates risk factors for heart disease and stroke, and connections between cardiovascular and cognitive health. ARIC includes two parts: Cohort Component and Community Surveillance Component. Cohort Component began in 1987, and each ARIC field center randomly selected and recruited cohort sample of individuals aged 45-64 from defined population in their community, to receive extensive examinations, including medical, social, and demographic data. In Community Surveillance Component, four communities are investigated to determine long term trends in hospitalized myocardial infarction and coronary heart disease deaths in men and women aged 35-84 years.

Proper citation: Atherosclerosis Risk in Communities (RRID:SCR_021769) Copy   

•   Source: SciCrunch Registry
  

https://paperswithcode.com/

Website devoted to papers that contain machine learning datasets, code, methods and evaluation tables. Done together with community, supported by NLP and ML.All content on this website is openly licenced under CC-BY-SA and everyone can contribute.Also operates specialized portals for papers with code in astronomy, physics, computer sciences, mathematics and statistics.

Proper citation: Papers with Code (RRID:SCR_021800) Copy   

•   Source: SciCrunch Registry
  

https://www.ionoptix.com/products/software/ionwizard-core-and-analysis/

Software tool to perform rapid fluorescence and morphometric real time, synchronous data acquisition with IonOptix systems, as well as polynomial fitting and analysis for myocyte research. Features include data trace averaging and filtering,composite images, and transient analysis. Integrates presentation of fluorescence traces and images, analog voltages, and cell length data under intuitive interface. Analyzes raw data by performing ratio, ion, or linear calibration calculations.

Proper citation: IonWizard (RRID:SCR_021764) Copy   

•   Source: SciCrunch Registry
  

https://knowledge.figshare.com/plus

Web based interface designed for academic research data management and research data dissemination. Accepts all file types. Enables academics to upload, share, cite and discover all manner of research outputs with security of knowing our hosting options and platform support long term preservation of data.Used to share big datasets from 100GB up. Added features and expert guidance are also included for sharing your data FAIR-ly.During data deposit, personal email support is available and once submitted, Figshare data expert will conduct review of the metadata and spot check of your dataset files and offer guidance, with main aim of enhancing discoverability and reusability.

Proper citation: FigsharePlus (RRID:SCR_021762) Copy   

•   Source: SciCrunch Registry
  

https://www.trikinetics.com/Downloads/DAMSystem3%20Software%20Data%20Sheet.pdf

Software tool for data collection to upload output from set of activity monitors and periodically saves it in disk files on Macintosh or Windows PC. Part of TriKinetics Drosophila Activity Monitoring System.

Proper citation: TriKinetics DAMSystem3 Software (RRID:SCR_021809) Copy   

•   Source: SciCrunch Registry
  

http://www.informatics.jax.org/vocab/gxd/anatomy/EMAPA:16039

Browser for mouse developmental anatomy. Ontology of mouse developmental anatomy was originally developed by Jonathan Bard and his colleagues as part of Edinburgh Mouse Atlas Project (EMAP) in order to provide structured controlled vocabulary of stage specific anatomical structures for developing laboratory mouse.

Proper citation: Mouse Developmental Anatomy Ontology Browser (RRID:SCR_021808) Copy   

•   Source: SciCrunch Registry
  

https://github.com/jeffdaily/parasail

Software tool as multiple sequence alignement for global, local and semi global alignments.

Proper citation: PARASAIL (RRID:SCR_021805) Copy   

•   Source: SciCrunch Registry
  

http://www.lbgi.fr/~julie/LEON-BIS

Software tool for sequence alignments evaluation. Multiple alignment evaluation of sequence neighbours using Bayesian inference system. Used to distinguish sections in multiple sequence alignments that are conserved across whole family or within subfamilies, and should be useful for automatic, high-throughput genome annotations, 2D/3D structure predictions, protein-protein interaction predictions etc.

Proper citation: LEON BIS (RRID:SCR_021803) Copy   

•   Source: SciCrunch Registry
  

https://training.incf.org

Portal that provides multimedia educational content from courses, conference lectures, and laboratory exercises from some of leading neuroscience institutes and societies to be more accessible to global neuroscience community.

Proper citation: TrainingSpace (RRID:SCR_022036) Copy   

•   Source: SciCrunch Registry
  

https://www.cellscale.com/products/microtester/

System includes MicroTester G2 device and software. MicroTester G2 is mechanical test device that can be used to test properties of variety of tissues and materials. Main components of device are load application microbeam, actuators, imaging system, and fluid bath/test chamber. MicroTester G2 software is divided into two modules: data collection module and review and analysis module.

Proper citation: CellScale: MicroTester G2 system (RRID:SCR_022034) Copy   

•   Source: SciCrunch Registry
  

http://www.ssu.ac.ir

Public university located in center of Iran in World Heritage city of Yazd.

Proper citation: Shahid Sadoughi University of Medical Sciences; Yazd; Iran (RRID:SCR_022031) Copy   

•   Source: SciCrunch Registry
  

https://canadu.com/

Software tool for learning fundamentals of RSLogix ladder logic programming.

Proper citation: LogiXPro (RRID:SCR_021978) Copy   

•   Source: SciCrunch Registry
  

http://www.plafornea.com.ar/

Software allows estimating growth and production at stand level of main forest species implanted in Argentine Mesopotamia such as Pino taeda, Eucalyptus grandis, Pino elliottii and Araucaria angustifolia. Areas for which models were adjusted correspond to province of Misiones, northeast of Corrientes and Concordia in province of Entre Ríos.

Proper citation: PlaForNEA (RRID:SCR_022027) Copy   

•   Source: SciCrunch Registry
  

https://www.coolled.com/products/pe-300ultra/

Highly controllable fluorescence microscopy Illumination System which offers broad spectrum LED illumination for imaging most common fluorophores. System offers precise control over wavelength irradiance and shuttering. Used for LED microscope lighting.

Proper citation: CoolLED: pE-300ultra (RRID:SCR_021972) Copy   

•   Source: SciCrunch Registry
  

https://simulabeta.sourceforge.io/

Software tool as simulation program for insulin glucose feedback control. Based on nonlinear MiMe-NoCoDI model.

Proper citation: SimulaBeta (RRID:SCR_021900) Copy   

•   Source: SciCrunch Registry
  

https://osf.io/xfpn4/

MDAR Framework establishes minimum set of requirements in transparent reporting applicable to studies in life sciences. MDAR checklist is tool for authors, editors and others seeking to adopt MDAR framework for transparent reporting in manuscripts and other outputs and designed to provide harmonizing principle for reporting requirements currently in use at various journals.

Proper citation: MDAR (RRID:SCR_022038) Copy   

•   Source: SciCrunch Registry
  

https://github.com/QZH2022/germline_flow

High performance of GPU accelerated variant calling tool in genome data analysis.

Proper citation: germline flow (RRID:SCR_021906) Copy   

•   Source: SciCrunch Registry
  

https://github.com/vlink/marge

Software package that integrates genome wide genetic variation with epigenetic data to identify collaborative transcription factor pairs. Optimized to work with chromatin accessibility assays such as ATAC-seq or DNase I hypersensitivity, as well as transcription factor binding data collected by ChIP-seq. Used to identify combinations of cell type specific transcription factors while simultaneously interpreting functional effects of non-coding genetic variation.

Proper citation: Motif Mutation Analysis for Regulatory Genomic Elements (RRID:SCR_021902) Copy   

•   Source: SciCrunch Registry