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http://mitodrome.ba.itb.cnr.it/

It has been developed with the aim to annotate the complete set of Drosophila melanogaster nuclear genes encoding for mitochondrial proteins in order to contribute to their functional characterization. The data collected in MitoDrome derive from the comparison of Human mitochondrial proteins available in SWISSPROT vs. the Drosophila genome, ESTs and cDNA sequences available in the FlyBase database. According to the results, each Drosophila gene sharing significant homology with a human mitochondrial protein was classified as a putative Drosophila mitochondrial gene and annotated in MitoDrome.

Proper citation: MitoDrome (RRID:SCR_013474) Copy   

•   Source: SciCrunch Registry
  

http://user.it.uu.se/~torer/publ/neuro-science.pdf

THIS RESOURCE IS NO LONGER IN SERVICE, documented August 19, 2016. A database project for the neuroimaging community NeuroGenerator is a database project funded by the European Commission. The overall purpose is to make databases with data in comparable and compatible formats suited for meta research and for making models of the cerebral cortex of the human brain. Researchers can submit their own raw PET-data and fMRI data to NeuroGenerator. The data are analyzed with the statistical software package FSL. In this way databases are produced of PET and fMRI data in standard anatomical format Data as statistical parametric images in standard anatomical format immediately comparable due to the uniform processing Cytoarchitectural data (from post mortem brains) in standard anatomical format.

Proper citation: Neurogenerator (RRID:SCR_013595) Copy   

•   Source: SciCrunch Registry
  

http://www.kazusa.or.jp/kaos/

This site has been developed by Kazusa DNA Research Institute for the purpose of offering the science community the analyzed sequence data produced by a multi-national Arabidopsis genome sequencing project coordinated by the Arabidopsis Genome Initiatives (AGI). The aim of this service is to enable users to browse the annotated sequence data produced by all the sequencing teams of AGI through an user-friendly graphic display system and search engines. Gene structures proposed on the annotated sequences as well as those predicted by computer programs are presented and each graphic item has a hyperlink to detailed information of the corresponding area. The nucleotide sequence data deposited in GenBank by AGI was downloaded, re-computer-analyzed at Kazusa and parsed results are displayed graphically.

Proper citation: Kazusa Arabidopsis data opening site (RRID:SCR_013511) Copy   

•   Source: SciCrunch Registry
  

http://www.nitrc.org/projects/pcp/

A project which systematically preprocess the data from the 1000 Functional Connectomes Project (FCP) and International Neuroimaging Data-sharing Initiative (INDI) and openly share the results. Data is currently hosted in an Amazon Web Services Public S3 Bucket and at NITRC.

Proper citation: Preprocessed Connectomes Project (RRID:SCR_014162) Copy   

•   Source: SciCrunch Registry
  

http://www.nitrc.org/projects/pd3/

THIS RESOURCE IS NO LONGER IN SERVICE, documented Jan. 5, 2016. Tools will be available for biomedical data mining and visualization as well as linkages to Google Maps and other online resources.

Proper citation: Parkinsons Disease Discovery Database (RRID:SCR_014160) Copy   

•   Source: SciCrunch Registry
  

http://www.radiometer.dk

Commercial organizations which develops, manufactures, and sells solutions and equipment for blood sampling, blood gas analysis, transcutaneous monitoring, and IT management systems under certain brand names.

Proper citation: Radiometer (RRID:SCR_014772) Copy   

•   Source: SciCrunch Registry
  

http://www.zeitz-puller.com/

Manufacturer and supplier of the DMZ Universal electrode pullers which produce pipettes and electrodes with a tip diameter down to 0.2 micrometers.

Proper citation: Zeitz (RRID:SCR_014774) Copy   

•   Source: SciCrunch Registry
  

https://imacel.net/en/

Artificial intelligence image analysis platform that facilitates life science research. It offers data analysis, processing functions, and security features to accelerate research productivity.

Proper citation: IMACEL (RRID:SCR_015868) Copy   

•   Source: SciCrunch Registry
  

http://www.neuralsignal.org

Public archive of neural signals recorded from various types of cells and sites in neural systems. Any data can be publicly accessed and downloaded, and users can submit their data.

Proper citation: Neural Signal Archive (RRID:SCR_014810) Copy   

•   Source: SciCrunch Registry
  

http://www.imodel.org

Database of interactive neural computation computer models at levels ranging from simple linear filters to large-scale networks of spiking units. Interface tools are provided while browsing and exploring models.

Proper citation: iModel (RRID:SCR_014811) Copy   

•   Source: SciCrunch Registry
  

http://www.bml-nmr.org

A collection of experimental 1D and 2D J-resolved NMR spectra of 208 metabolite standards.

Proper citation: Birmingham Metabolite Library (RRID:SCR_014666) Copy   

•   Source: SciCrunch Registry
  

http://mobidb.bio.unipd.it

A database of protein disorder and mobility annotations. The database features three levels of annotation: manually curated data (which are extracted from the DisProt database), indirect data, and predicted data. Additional annotations are included from external sources, including UniProt, Pfam, PDB, and STRING.

Proper citation: MobiDB (RRID:SCR_014542) Copy   

•   Source: SciCrunch Registry
  

https://www.crossref.org/services/event-data/

Database of events about articles that is run by CrossRef. It allows users to view social media mentions, news publication references, annotations, and more.

Proper citation: Crossref EventData (RRID:SCR_016281) Copy   

•   Source: SciCrunch Registry
  

https://www.gem-beta.org/Public/Home.aspx

Database that contains behavioral and social science measures organized by theoretical constructs. GEM is designed to enable researchers to use common measures with the goal of exchanging harmonized data.

Proper citation: Grid-Enabled Measures Database (RRID:SCR_016043) Copy   

•   Source: SciCrunch Registry
  

https://rtips.cancer.gov/rtips/index.do

Database of cancer control interventions and program materials. It is designed to provide program planners and public health practitioners easy and immediate access to research-tested materials.

Proper citation: Research-tested Intervention Programs (RTIPs) (RRID:SCR_016042) Copy   

•   Source: SciCrunch Registry
  

http://mosas.sysu.edu.cn/genome

Database project to document the genome sequence of the Lancelet, a basal extant chordate. Information provided includes reference haploid genome sequence and annotation data, gene models and function, and integrated information from diploid genome sequence and annotation data.

Proper citation: Lancelet Genome Sequence and Annotation Project Database (RRID:SCR_014987) Copy   

•   Source: SciCrunch Registry
  

http://floresta.eead.csic.es/3dfootprint

Database of DNA-binding protein structures that is updated with Protein Data Bank complexes. It provides structure-based binding specificities and sequence logos, classification and clusters of protein-DNA interfaces, and downloads/stats.

Proper citation: 3D-footprint (RRID:SCR_015713) Copy   

•   Source: SciCrunch Registry
  

https://github.com/wilsonGW/SomaDetection

Source code for a machine learning method to detect somas on confocal microscopic images of the Drosophila brain. The method can be applied to the original raw images where the noises are not removed and the number of somas is unknown.

Proper citation: SomaDetection (RRID:SCR_015717) Copy   

•   Source: SciCrunch Registry
  

http://servers.binf.ku.dk/bloodspot/

Database that provides gene expression profiles of genes and gene signatures in healthy and malignant hematopoiesis and includes data from both humans and mice. In addition to the default plot, which displays an integrated expression plot, two additional levels of visualization are available: an interactive tree showing the hierarchical relationship between the samples, and a Kaplan-Meier survival plot. The database is sub-divided into several datasets that are accessible for browsing.

Proper citation: BloodSpot (RRID:SCR_015563) Copy   

•   Source: SciCrunch Registry
  

http://compartments.jensenlab.org/Downloads

Web resource that integrates evidence on protein subcellular localization from manually curated literature, high-throughput screens, automatic text mining, and sequence-based prediction methods. All evidence is mapped to common protein identifiers and Gene Ontology terms, and further unify it by assigning confidence scores that facilitate comparison of the different types and sources of evidence and visualize these scores on a schematic cell.

Proper citation: COMPARTMENTS Subcellular localization database (RRID:SCR_015561) Copy   

•   Source: SciCrunch Registry