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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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mrCaNaVaR Resource Report Resource Website 10+ mentions |
mrCaNaVaR (RRID:SCR_003135) | mrCaNaVaR | software resource | Copy number caller that analyzes the whole-genome next-generation sequence mapping read depth to discover large segmental duplications and deletions. It also has the capability of predicting absolute copy numbers of genomic intervals. | genome, next-generation sequence, duplication, deletion, copy number variant, bio.tools |
is listed by: OMICtools is listed by: bio.tools is listed by: Debian is related to: SPLITREAD has parent organization: SourceForge |
Free, Freely available | OMICS_02138, nlx_156790, biotools:mrcanavar | https://bio.tools/mrcanavar | SCR_003135 | mrCaNaVaR - micro-read Copy Number Variant Regions, micro-read Copy Number Variant Regions | 2026-08-15 11:22:27 | 16 | ||||||
|
PathGuide: the pathway resource list Resource Report Resource Website 10+ mentions |
PathGuide: the pathway resource list (RRID:SCR_003248) | Pathguide | data or information resource, catalog, database | Catalog containing information about 547 biological pathway related resources and molecular interaction related resources. Databases that are free and those supporting BioPAX, CellML, PSI-MI or SBML standards are respectively indicated. | gene interaction network, metabolic pathway, signaling pathway, pathway diagram, protein-compound interaction, protein-protein interaction, protein sequence focused, transcription factor, gene regulatory network, transcription factor target, genetic interaction, pathway, molecular interaction, FASEB list |
is listed by: OMICtools is related to: PSI-MI is related to: bioDBcore is related to: Biological Pathways Exchange is related to: CellML is related to: SBML is related to: Biological Pathways Exchange |
PMID:16381921 | Free, Freely available | SciRes_000148, OMICS_01701, nif-0000-00640 | SCR_003248 | 2026-08-15 11:22:29 | 47 | |||||||
|
Laura and John Arnold Foundation Resource Report Resource Website 1+ mentions |
Laura and John Arnold Foundation (RRID:SCR_003240) | LJAF | institution | Private foundation whose funding activities are primarily centered around improving life in the United States. Its mission is to produce big and lasting changes in society over the long term. Their four areas of focus (2014) are: criminal justice, K-12 education, public accountability, and research integrity. | grant, criminal justice, k-12 education, public accountability, research integrity | Free, Freely available | Crossref funder ID: 100009827, ISNI: 0000 0004 0555 6315, nlx_157294, grid.480593.3, Wikidata: Q17088752 | https://www.arnoldventures.org/people/laura-arnold-john-arnold | SCR_003240 | Arnold Foundation | 2026-08-15 11:22:26 | 4 | |||||||
|
Open Science Framework Resource Report Resource Website 500+ mentions |
Open Science Framework (RRID:SCR_003238) | OSF | storage service resource, service resource, data repository | Platform to support research and enable collaboration. Used to discover projects, data, materials, and collaborators helpful to your own research. | workflow, cloud, data management, provenance, network, collaboration, data sharing, interdisciplinary research, FASEB list |
is used by: NIH Heal Project is listed by: re3data.org is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) is listed by: DataCite is listed by: FAIRsharing has parent organization: Center for Open Science |
Free, Freely available | DOI:10.25504/FAIRsharing.g4z879, DOI:10.17605, nlx_157292, DOI:10.17616/R3N03T, r3d100011268, SCR_017419 | http://openscienceframework.org, https://doi.org/10.17616/R3N03T, https://doi.org/10.17616/r3n03t, https://doi.org/10.17605/, https://dx.doi.org/10.17605/, https://fairsharing.org/10.25504/FAIRsharing.g4z879, https://doi.org/10.17616/R35G9K | SCR_003238 | 2026-08-15 11:22:26 | 938 | |||||||
|
SaskPrimerFS Resource Report Resource Website |
SaskPrimerFS (RRID:SCR_003159) | SaskPrimerFS | software resource | Software pipeline for designing gene family specific PCR primers. It infers intronic regions of a target species and design for them by utilizing DNA sequence information from a reference organism. | gene family, pcr primer, pcr, primer, dna sequence, command-line, perl |
is listed by: OMICtools has parent organization: SourceForge |
Free, Available for download, Freely available | OMICS_02335 | SCR_003159 | 2026-08-15 11:22:24 | 0 | ||||||||
|
GeneCopoeia Resource Report Resource Website 5000+ mentions |
GeneCopoeia (RRID:SCR_003145) | commercial organization | Commercial organization which provides reagents and services for molecular biology research. Its services include clone collections, microRNA solutions, genome editing, qPCR products, and fluorescent labeling and detection. | reagent, pcr, clone, microrna, cell biology | Free, Freely available | nlx_152370 | SCR_003145 | GeneCopoeia Inc | 2026-08-15 11:22:27 | 6984 | |||||||||
|
MorphoBank Resource Report Resource Website 100+ mentions |
MorphoBank (RRID:SCR_003213) | MorphoBank | data or information resource, database | Web application providing online database and workspace for evolutionary research, specifically systematics (the science of determining the evolutionary relationships among species). It enables researchers to upload images and affiliate data with those images (labels, species names, etc.) and allows researchers to upload morphological data and affiliate it with phylogenetic matrices. MorphoBank is project-based, meaning a team of researchers can create a project and share the images and associated data exclusively with each other. When a paper associated with the project is published, the research team can make their data permanently available for view on MorphoBank where it is now archived. | phenotype, web service, phylogenetics, cladistics, histology, neurology, taxonomy, image, phylogeny, cladistic analysis, morphology, anatomy, evolution, homology, systems biology, FASEB list |
is listed by: re3data.org is listed by: DataCite is listed by: FAIRsharing has parent organization: Stony Brook University; New York; USA |
NSF ; NOAA NA04OAR4700191 |
PMID:34875801 | Free, Freely available | DOI:10.25504/FAIRsharing.1y63n8, DOI:10.17616/R3PC7F, DOI:10.7934, nlx_156938, r3d100010786 | https://doi.org/10.17616/R3PC7F, https://doi.org/10.17616/r3pc7f, https://doi.org/10.7934/, https://dx.doi.org/10.7934/, https://fairsharing.org/10.25504/FAIRsharing.1y63n8, https://doi.org/10.17616/R3MK88 | SCR_003213 | 2026-08-15 11:22:26 | 119 | |||||
|
Pipeliner Resource Report Resource Website 1+ mentions |
Pipeliner (RRID:SCR_003171) | software resource | Software for evaluating the performance of bioinformatics pipelines for Next Generation re-Sequencing. | standalone software, c++, bio.tools |
is listed by: OMICtools is listed by: bio.tools is listed by: Debian |
PMID:24890372 | Free, Available for download, Freely available | OMICS_04844, biotools:pipeliner | https://bio.tools/pipeliner | SCR_003171 | 2026-08-15 11:22:27 | 7 | |||||||
|
Allele Biotechnology Resource Report Resource Website 1+ mentions |
Allele Biotechnology (RRID:SCR_003164) | Allele Biotech | commercial organization | A private company offering a wide variety of Molecular Biology reagents, fluorescent proteins, luciferase assay substrates, genotyping kits, and various custom services. The company isalso in the RNAi field with its recent patents in Pol III promoter-driven siRNA, shRNA, and miRNA. They introduced high titer lentivirus, camelid antibodies, and cell based assays and also offer Baculovirus protein expression and Gryphon retrovirus systems. | molecular biology, reagent, fluorescent protein, luciferase assay substrate, genotyping kit, custom service | is related to: Phoenix | Free, Available for download, Freely available | nlx_156865 | SCR_003164 | Allele Biotechnology and Pharmaceuticals Inc | 2026-08-15 11:22:24 | 1 | |||||||
|
American Association for the History of Medicine Resource Report Resource Website |
American Association for the History of Medicine (RRID:SCR_003161) | AAHM | nonprofit organization | A professional association of historians, physicians, nurses, archivists, curators, librarians, and others that promotes and encourages research, study, writing, and interest in the history of medicine and allied fields. | history, medicine | Free, Freely available | nlx_156861, grid.486311.9 | https://ror.org/04w1hax42 | SCR_003161 | 2026-08-15 11:22:27 | 0 | ||||||||
|
CQN Resource Report Resource Website 1+ mentions |
CQN (RRID:SCR_001786) | CQN | software resource | A normalization tool for RNA-Seq data, implementing the conditional quantile normalization method. | rna-seq, differential expression, preprocessing, bio.tools |
is listed by: OMICtools is listed by: bio.tools is listed by: Debian has parent organization: Bioconductor has parent organization: Johns Hopkins Bloomberg School of Public Health; Maryland; USA |
PMID:22285995 | Free, Available for download, Freely available | OMICS_01949, biotools:cqn | https://bio.tools/cqn | SCR_001786 | Conditional Quantile Normalization | 2026-08-15 11:22:03 | 6 | |||||
|
PoissonSeq Resource Report Resource Website 10+ mentions |
PoissonSeq (RRID:SCR_001784) | PoissonSeq | software resource | Software package that implements a method for normalization, testing, and false discovery rate estimation for RNA-sequencing data. | normalization, testing, false discovery rate, rna-seq |
is listed by: OMICtools has parent organization: Stanford University; Stanford; California |
PMID:22003245 | Free, Available for download, Freely available | OMICS_01950 | http://cran.r-project.org/web/packages/PoissonSeq/index.html | SCR_001784 | PoissonSeq: Significance analysis of sequencing data based on a Poisson log linear model | 2026-08-15 11:22:09 | 34 | |||||
|
Kindai University; Osaka; Japan Resource Report Resource Website 1+ mentions |
Kindai University; Osaka; Japan (RRID:SCR_001814) | university | Private non-sectarian and coeducational university based in Higashiosaka, Osaka, Japan. | private, university, osaka, japan | is parent organization of: Kindai University School of Medicine; Osaka; Japan | Free | ISNI:0000 0004 1936 9967, nlx_149308, grid.258622.9, Wikidata:Q912329 | https://ror.org/05kt9ap64 | SCR_001814 | Kinki University | 2026-08-15 11:22:02 | 1 | |||||||
|
Pennsylvania State Hershey College of Medicine; Pennsylvania; USA Resource Report Resource Website |
Pennsylvania State Hershey College of Medicine; Pennsylvania; USA (RRID:SCR_002019) | university | Public, land-grant research university in Pennsylvania, USA. The College of Medicine offers professional degree programs in medicine. | medicine, public, research, university |
has parent organization: Pennsylvania State University is parent organization of: Pennsylvania State University College of Medicine Neuroscience is parent organization of: Penn State College of Medicine Genome Sciences Core Facility is parent organization of: Penn State Hershey College of Medicine Clinical Research Biospecimen Core Facility is parent organization of: Penn State Hershey College of Medicine MRI Core Facility is parent organization of: Penn State Hershey College of Medicine Zebrafish Functional Genomics Core Facility is parent organization of: Penn State Hershey College of Medicine Transmission Electron Microscopy Core Facility is parent organization of: Penn State Hershey College of Medicine Light Microscopy Imaging Core Facility is parent organization of: Pennsylvania State University Hershey College of Medicine Custom Antibody Core Facility is parent organization of: Penn State College of Medicine High Performance Computing Core Facility is parent organization of: Penn State Hershey College of Medicine Comparative Medicine Imaging Core Facility is parent organization of: Penn State College of Medicine Biomolecular NMR Core Facility is parent organization of: Penn State Hershey College of Medicine Atomic Force Microscopy Core Facility is parent organization of: Penn State College of Medicine Pulmonary Immunology and Physiology Core Facility is parent organization of: Penn State Hershey College of Medicine Institutional Biorepository Core Facility is parent organization of: Penn State Hershey College of Medicine Flow Cytometry and Cell Sorting Core Facility is parent organization of: Penn State Hershey College of Medicine cryo-EM Core Facility |
nlx_82737 | http://med.psu.edu/web/college/home | SCR_002019 | Penn State Hershey College of Medicine; Pennsylvania; USA, Pennsylvania State Hershey College of Medicine, Penn State Hershey College of Medicine | 2026-08-15 11:22:11 | 0 | ||||||||
|
SNPper Resource Report Resource Website 50+ mentions |
SNPper (RRID:SCR_001963) | SNPper | software resource | Retrieve known single-nucleotide polymorphisms (SNPs) by position or by association with a gene; save, filter, analyze, display or export SNP sets; explore known genes using names or chromosome positions. | single-nucleotide polymorphism, gene, chromosome |
is listed by: OMICtools has parent organization: University of Florida; Florida; USA |
PMID:12490454 | THIS RESOURCE IS NO LONGER IN SERVICE | OMICS_01926 | SCR_001963 | 2026-08-15 11:22:11 | 50 | |||||||
|
National Center for PTSD Resource Report Resource Website 10+ mentions |
National Center for PTSD (RRID:SCR_001967) | NCPTSD | institution | We are the center of excellence for research and education on the prevention, understanding, and treatment of PTSD. Our Center has seven divisions across the country. Although we provide no direct clinical care, our purpose is to improve the well-being and understanding of American Veterans. We conduct cutting edge research and apply resultant findings to: Advance the Science and Promote Understanding of Traumatic Stress. The National Center has emerged as the world's leading research and educational center of excellence on PTSD. Its vision is to be the foremost leader in information on PTSD and trauma; information generated internally through its extensive research program, and information synthesized from published scientific research and collective clinical experience that is efficiently disseminated to the field. The Center is organized to facilitate rapid translation of science into practice, assuring that the latest research findings inform clinical care; and translation of practice into science, assuring that questions raised by clinical challenges are addressed using rigorous experimental protocols. By drawing on the specific expertise vested at each separate division (e.g., behavioral, neuroscientific, etc.), the National Center provides a unique infrastructure within which to implement multidisciplinary initiatives regarding the etiology, pathophysiology, diagnosis and treatment of PTSD. | post-traumatic stress disorder, stress, trauma, treatment, stress-related disorder, clinical care, human, traumatic stress disorder, one mind ptsd | has parent organization: U.S. Department of Veterans Affairs | US Department of Veterans Affairs | nif-0000-10538, grid.497281.1, ISNI: 0000 0004 0374 606X | https://ror.org/01dbbht76 | http://www.ncptsd.va.gov/ | SCR_001967 | National Center for Posttraumatic Stress Disorder, VA National Center for PTSD | 2026-08-15 11:22:06 | 17 | |||||
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Neurofed Resource Report Resource Website |
Neurofed (RRID:SCR_002011) | Neurofed | people resource | THIS RESOURCE IS NO LONGER IN SERVICE, documented on August 26, 2016. The NeuroFed resource is a listing of neuroscience research funding contacts in the Federal government. It is an informal compendium (PDF) of names and contact information for nearly 300 research grant and scientific review administrators in 21 organizational units of the federal government. An electronic (PDF) version of the most recent update of this list is available on the Society for Neuroscience website at: http://www.sfn.org/index.aspx?pagename=professionalDevelopment_training. The list is updated annually by NIH personnel. |
is used by: NIF Data Federation has parent organization: National Institutes of Health |
THIS RESOURCE IS NO LONGER IN SERVICE | nif-0000-10988 | SCR_002011 | 2026-08-15 11:22:07 | 0 | |||||||||
|
Parkinson Society Canada Resource Report Resource Website 1+ mentions |
Parkinson Society Canada (RRID:SCR_002014) | nonprofit organization | A not-for-profit, volunteer based charity whose purpose is to find a cure for Parkinson's disease through research, advocacy, education and support services. Parkinson Society Canadas leads initiatives that include: raising funds for research through national events; funding research, movement disorder clinics, and outreach programs across Canada; staffing a national Information and Referral Centre; developing educational and information materials; providing up to date detailed information about Parkinson's disease; and providing support for regional partners to better meet the needs of people living with Parkinson's services. Researchers can apply for various funding awards and fellowships by following the funding process outlined by Parkinson Society Canada. | parkinson's disease, parkinson's disease online community, parkinson's disease organizations, parkinson's disease patient care, parkinson's disease therapy, parkinson's disease treatment center | Parkinson's Disease | Public, Funding is available to researchers in the form of awards and fellowships | grid.453461.1, Crossref funder ID: 501100000263, nif-0000-11672 | https://ror.org/04amfk357 | SCR_002014 | 2026-08-15 11:22:11 | 5 | ||||||||
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SA Instruments: Model 1025 MR-compatible Small Animal Monitoring and Gating System Resource Report Resource Website 1+ mentions |
SA Instruments: Model 1025 MR-compatible Small Animal Monitoring and Gating System (RRID:SCR_002090) | Model 1025 Monitoring & Gating System | instrument resource | Magnetic resonance compatible monitoring and gating system, including software, that enables monitoring rectal temperature, electrocardiogram and respiration rate during magnetic resonance imaging scan time. The PC displays multiple waveforms, measured values, trends and gating pulses. The data Acquisition modules are controlled by menu driven software from the PC. Data acquisition modules are available to measure the following parameters: ECG, respiration (three ways), temperature (two ways), pressure including invasive blood pressure (two ways), oxygen saturation and end-tidal CO2. | hardware, instrument, equipment, physiology, monitoring, gating, mr environment, respiration, temperature, blood pressure, oxygen saturation, end-tidal co2, magnetic resonance, electrocardiogram, magnetic resonance imaging, software resource | Free, Freely available | SciRes_000157 | https://wikihost.uib.no/mriwiki/images/4/4c/SAInstruments_1025.pdf | http://www.i4sa.com/web_app/main/defaultProduct.aspx?ID=82&PT=3 | SCR_002090 | Model 1025 Monitoring and Gating System, MR-Compatible Model 1025 Monitoring and Gating System, Small Animal Monitoring and Gating System | 2026-08-15 11:22:12 | 3 | ||||||
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Korea National Institute of Health Resource Report Resource Website 10+ mentions |
Korea National Institute of Health (RRID:SCR_001959) | KNIH | institution | Institute dedicated to medical research to improve biomedical innovation and public health in South Korea. | health research institute, south korea | is parent organization of: Genovar | THIS RESOURCE IS NO LONGER IN SERVICE | grid.415482.e, nlx_156100, ISNI: 0000 0004 0647 4899, Crossref funder ID: 501100003653 | https://ror.org/00qdsfq65 | SCR_001959 | Korea NIH | 2026-08-15 11:22:06 | 13 |
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