Searching the RRID Resource Information Network
Are you sure you want to leave this community? Leaving the community will revoke any permissions you have been granted in this community.
SciCrunch Registry is a curated repository of scientific resources, with a focus on biomedical resources, including tools, databases, and core facilities - visit SciCrunch to register your resource.
| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Cancer GEnome Mine Resource Report Resource Website 1+ mentions |
Cancer GEnome Mine (RRID:SCR_000728) | data or information resource, database | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September23, 2022. Cancer GEnome Mine is a public database for storing clinical information about tumor samples and microarray data, with emphasis on array comparative genomic hybridization (aCGH) and data mining of gene copy number changes. Within the website, users can browse microarray data or perform searches by hospital/disease classification/pathology/clinical presentation and other methods. | gene copy number, cancer, comparative genomic hybridization, microarray, tumor, tumor gene | PMID:17932056 | THIS RESOURCE IS NO LONGER IN SERVICE. | nif-0000-02636, r3d100010559 | https://doi.org/10.17616/R3X02X | SCR_000728 | CanGEM | 2026-08-29 11:29:07 | 3 | |||||||
|
H2SO4Hurts Resource Report Resource Website |
H2SO4Hurts (RRID:SCR_000686) | H2SO4Hurts | blog, data or information resource, narrative resource | Blog about technology, molecular biology, and editorial comments on the current state of science on the internet. Brian Krueger PhD, is the owner, creator and coder of LabSpaces by night and a Molecular biologist by day. His posts are presented as opinion and commentary and do not represent the views of LabSpaces Productions, LLC, his employer, or his educational institution. | hhv8, kaposi sarcoma herpes virus, micrornas, molecular genetics, microbiology, science |
is used by: NIF Data Federation has parent organization: LabSpaces |
THIS RESOURCE IS NO LONGER IN SERVICE | nlx_144220 | SCR_000686 | H2SO4 Hurts: And Other Pearls of Science Wisdom, H2SO4 Hurts - Brian Krueger PhD, H2SO4Hurts - Brian Krueger PhD | 2026-08-29 11:29:06 | 0 | |||||||
|
Biozon Resource Report Resource Website 1+ mentions |
Biozon (RRID:SCR_000725) | data or information resource, database | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 23,2022. Biozon is a unified biological resource on DNA sequences, proteins, complexes and cellular pathways. It currently provides data on pairwise similarities between proteins, the domain structure of proteins, structural similarities, threading-based and profile-profile similarities between protein families. Additional information about 3D models, predicted protein-protein interactions, assignment of genes to pathways and expression data analysis, as well as local and global maps of the protein space will be gradually added to Biozon. | 3d modelprotein-protein interaction, cellular pathway, dna sequence, protein, protein complex, protein family | has parent organization: Stanford University; Stanford; California | PMID:16381854 PMID:16480510 |
THIS RESOURCE IS NO LONGER IN SERVICE | nif-0000-02613 | SCR_000725 | Biozon | 2026-08-29 11:29:15 | 4 | |||||||
|
Bangkok Biomaterial Center Resource Report Resource Website |
Bangkok Biomaterial Center (RRID:SCR_000328) | biomaterial supply resource, material resource, tissue bank | THIS RESOURCE IS NO LONGER IN SERVICE, documented May 9, 2017. | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_54103 | SCR_000328 | 2026-08-29 11:29:08 | 0 | |||||||||||
|
sumo Resource Report Resource Website 100+ mentions |
sumo (RRID:SCR_001572) | sumo | analysis service resource, data analysis service, production service resource, service resource | Service that searches carbohydrate structures for motifs commonly used for carbohydrate classification, like N- and O-glycan cores, Lewis antigens, etc. Note: Sumo is currently under construction. Motif searches are a frequently used tool in proteomics. For carbohydrate structures, there are also many motifs classified in the literature, e.g. the Lewis antigens or the diverse O-glycan core structures. Sumo is a tool to locate such motifs in a carbohydrate structure given in LINUCS or in IUPAC nomenclature., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025. | carbohydrate, structure, carbohydrate structure, motif, carbohydrate classification, sugar, iupac, nomenclature, notation |
is related to: LINUCS has parent organization: glycosciences.de |
THIS RESOURCE IS NO LONGER IN SERVICE | nlx_152885 | SCR_001572 | sumo: SUgar MOtif search, SUgar MOtif search | 2026-08-29 11:29:10 | 215 | |||||||
|
GeneWiz browser Resource Report Resource Website 1+ mentions |
GeneWiz browser (RRID:SCR_001454) | analysis service resource, production service resource, service resource | An interactive web application for visualizing genomic data of sequenced prokaryotic chromosomes. It allows users to carry out various analyses such as mapping alignments of homologous genes to other genomes, mapping of short sequencing reads to a reference chromosome, and calculating DNA properties such as curvature or stacking energy along the chromosome. The GeneWiz browser produces an interactive graphic that enables zooming from a global scale down to single nucleotides, without changing the size of the plot. Its ability to disproportionally zoom provides optimal readability and increased functionality compared to other browsers. The tool allows the user to select the display of various genomic features, color setting and data ranges. Custom numerical data can be added to the plot allowing, for example, visualization of gene expression and regulation data. Further, standard atlases are pre-generated for all prokaryotic genomes available in GenBank, providing a fast overview of all available genomes, including recently deposited genome sequences. | genome, chromosome, alignment, homologous gene, mapping, short sequencing reads, reference chromosome | has parent organization: Technical University of Denmark; Lyngby; Denmark | PMID:21304658 | Free, Freely Available | nif-0000-08429 | SCR_001454 | 2026-08-29 11:29:12 | 6 | ||||||||
|
University of Minnesota Histology and Immunohistochemistry Laboratory Resource Report Resource Website |
University of Minnesota Histology and Immunohistochemistry Laboratory (RRID:SCR_001056) | material service resource, production service resource, service resource | Lab based at the University of Minnesota that provides histology services, including frozen sectioning, tissue grossing, fixation, and sectioning, optimization and performance of immunohistochemistry (IHC). | histology, frozen sectioning, fixation, immunohistochemistry, production service resource, material service resource |
is listed by: ScienceExchange is related to: University of Minnesota - Twin Cities Labs and Facilities has parent organization: University of Minnesota Twin Cities; Minnesota; USA |
THIS RESOURCE IS NO LONGER IN SERVICE | SciEx_8914 | http://www.scienceexchange.com/facilities/histology-and-immunohistochemistry-ihc-laboratory | SCR_001056 | University of Minnesota - Twin Cities Histology and Immunohistochemistry Laboratory, University of Minnesota - Twin Cities Histology and Immunohistochemistry (IHC) Laboratory, University of Minnesota Histology and Immunohistochemistry (IHC) Laboratory | 2026-08-29 11:29:17 | 0 | |||||||
|
Lifespan Observations Database Resource Report Resource Website 1+ mentions |
Lifespan Observations Database (RRID:SCR_001609) | Lifespan Observations Database | data or information resource, database | Database that collects published lifespan data across multiple species. The entire database is available for download in various formats including XML, YAML and CSV. | lifespan, phenotype, intervention, gene, compound, publication |
is used by: NIF Data Federation is used by: Aging Portal is related to: MONARCH Initiative has parent organization: Sageweb |
Aging | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_153873 | http://sageweb.org/lifespandb | SCR_001609 | Sageweb Lifespan Observation Database | 2026-08-29 11:29:13 | 1 | |||||
|
Flannotator Resource Report Resource Website 10+ mentions |
Flannotator (RRID:SCR_001608) | Flannotator | data or information resource, database | Allows annotation of gene expression at all stages of development and tissue types (including sub cellular location) using standard Drosophila anatomy ontology. All methods of input use a controlled vocabulary to ensure data integrity. | annotation, gene expression, development stage, tissue type, subcellular, stock, gene, protein interaction, embryo |
is related to: Drosophila anatomy and development ontologies has parent organization: University of Cambridge; Cambridge; United Kingdom |
Free, Freely available | nlx_153872 | SCR_001608 | 2026-08-29 11:29:18 | 13 | ||||||||
|
Interolog/Regulog Database Resource Report Resource Website 1+ mentions |
Interolog/Regulog Database (RRID:SCR_000755) | data or information resource, database | Interolog/Regulog quantitatively assess the degree to which interologs can be reliably transferred between species as a function of the sequence similarity of the corresponding interacting proteins. | interacting, interolog, protein, regulog, sequence, bio.tools |
is listed by: bio.tools is listed by: Debian has parent organization: Yale University; Connecticut; USA |
PMID:15173116 | nif-0000-20863, biotools:interolog | https://bio.tools/interolog | SCR_000755 | Interolog | 2026-08-29 11:29:07 | 2 | |||||||
|
Collecting Duct Database Resource Report Resource Website |
Collecting Duct Database (RRID:SCR_000759) | CDDB | data or information resource, database | THIS RESOURCE IS NO LONGER IN SERVICE, documented on July 16, 2013. This database is intended to serve as a learning tool to obtain curated information for the design of microarray targets to scan collecting duct tissues (human, rat, mouse). The database focuses on regulatory and transporter proteins expressed in the collecting duct, but when collecting duct proteins are a member of a larger family of proteins, common additional members of the family are included even if they have not been demonstrated to be expressed in the collecting duct. An Internet-accessible database has been devised for major collecting duct proteins involved in transport and regulation of cellular processes. The individual proteins included in this database are those culled from literature searches and from previously published studies involving cDNA arrays and serial analysis of gene expression (SAGE). Design of microarray targets for the study of kidney collecting duct tissues is facilitated by the database, which includes links to curated base pair and amino acid sequence data, relevant literature, and related databases. Use of the database is illustrated by a search for water channel proteins, aquaporins, and by a subsequent search for vasopressin receptors. Links are shown to the literature and to sequence data for human, rat, and mouse, as well as to relevant web-based resources. Extension of the database is dynamic and is done through a maintenance interface. This permits creation of new categories, updating of existing entries, and addition of new ones. CDDB is a database that organizes lists of genes found in collecting duct tissues from three mammalian species: human, rat, and mouse. Proteins are divided into categories by family relationships and functional classification, and each category is assigned a section in the database. Each section includes links to the literature and to sequence information for genes, proteins, expressed sequence tags, and related information. The user can peruse a section or use a search engine at the bottom of the web page to search the database for a name or abbreviation or for a link to a sequence. Each entry in the database includes links to relevant papers in the kidney and collecting duct literature. It uses links to PubMed to generate MEDLINE searches for retrieval of references. In addition, each entry includes links to curated sequence data available in LocusLink. Individual links are made to sequence and protein data for human, rat, and mouse. Links are then added as curated sequences become available for proteins identified in the renal collecting duct and for proteins identified in kidney and similar in function or homologous to proteins identified in the collecting duct. | expressed sequence tag, expression, family, functional, gene, aquaporin, array, cdna, classification, collecting duct, homologous, human, kidney, literature, mammal, mammalian, microarray, mouse, protein, protein localization and targeting databases, rat, receptor, regulatory, relationship, scan, serial analysis, specie, target, tissue, transporter, vasopressin, water channel protein | has parent organization: National Institutes of Health | THIS RESOURCE IS NO LONGER IN SERVICE | nif-0000-21078 | SCR_000759 | Collecting Duct Database | 2026-08-29 11:29:07 | 0 | |||||||
|
MS Bioworks Resource Report Resource Website |
MS Bioworks (RRID:SCR_001043) | analysis service resource, data analysis service, production service resource, service resource | A protein mass spectrometry service provider that delivers data to industrial and government organizations as well as academic institutions. Protein services include protein identification, mapping, profiling, and mass measurement. Post-translational modification services include PTM profiling, phospho-screening, and glyco-screening. Quantitative proteomics services include workflows for label free, TMT, SILAC, and PRM. MS Bioworks also provides immunoprecipitated protein analysis and custom analysis. | mass spectrometry, protein, data, biomarkers, glycoproteins, proteomics service, analysis service resource, post translational modification, quantitative proteomics | is listed by: ScienceExchange | Services available for purchase | SciEx_4856 | http://www.scienceexchange.com/facilities/ms-bioworks | SCR_001043 | MS Bioworks - Protein Mass Spectrometry Services | 2026-08-29 11:29:17 | 0 | |||||||
|
MirSNP Resource Report Resource Website 50+ mentions |
MirSNP (RRID:SCR_001629) | MirSNP | data or information resource, database | Database of human SNPs in predicted miRNA-mRNA binding sites, based on information from dbSNP135 and mirBASE18. MirSNP is highly sensitive and covers most experiments confirmed SNPs that affect miRNA function. MirSNP may be combined with researchers' own GWAS or eQTL positive data sets to identify the putative miRNA-related SNPs from traits/diseases associated variants. They aim to update the MirSNP database as new versions of mirBASE and dbSNP database become available. | single nucleotide polymorphism, mirna, genome-wide association study, expression quantitative trait locus, mirna-mrna binding site, trait, disease, variant, gene, mrna, FASEB list | has parent organization: Peking University; Beijing; China | National Natural Science Foundation of China 81071087; National Natural Science Foundation of China 81071088; International Science and Technology Cooperation Program of China 2010DFB30820; National High Technology Research and Development Program of China 2009AA022702 |
PMID:23173617 | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_153896 | http://202.38.126.151/hmdd/mirsnp/search/ | SCR_001629 | 2026-08-29 11:29:13 | 74 | |||||
|
PhenoBank Resource Report Resource Website 1+ mentions |
PhenoBank (RRID:SCR_000930) | data or information resource, database, video resource | A database that provides primary data from two high-content screens that profile the set of ~900 essential C. elegans genes (~5% of the genome) required for embryo production and/or events during the first two embryonic divisions. Phenobank houses the movies, scored defects, and phenotypic classification data for the embryo-filming and gonad morphology screens. | phenotype, data, c elegans, genome, embryo, gonad, morphology, classification | has parent organization: Max Planck Institute of Molecular Cell Biology and Genetics; Dresden; Germany | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_73232 | SCR_000930 | 2026-08-29 11:29:11 | 1 | |||||||||
|
AnimalTFDB Resource Report Resource Website 100+ mentions |
AnimalTFDB (RRID:SCR_001624) | AnimalTFDB | data or information resource, database | A comprehensive transcription factor (TF) database in which they identified and classified all the genome-wide TFs in 50 sequenced animal genomes (Ensembl release version 60). In addition to TFs, it also collects transcription co-factors and chromatin remodeling factors of those genomes, which play regulatory roles in transcription. Here they defined the TFs as proteins containing a sequence-specific DNA-binding domain (DBD) and regulating target gene expression. Currently, the AnimalTFDB classifies all the animal TFs into 72 families according to their conserved DBDs. Gene lists of transcription factors, transcription co-factors and chromatin remodeling factors of each species are available for downloading., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025. | transcription factor, dna-binding domain, transcription co-factor, chromatin remodeling factor, gene structure, functional domain, go annotation, protein interaction, ortholog, paralog, 3d structure, pathway, protein-protein interaction, binding site, target, data set, image collection, 3d spatial image, bio.tools, FASEB list |
is listed by: OMICtools is listed by: bio.tools is listed by: Debian is related to: Gene Ontology is related to: Ensembl has parent organization: Huazhong University of Science and Technology; Wuhan; China |
Huazhong University of Science and Technology; Wuhan; China ; Fundamental Research Funds for the Central Universities 2010MS045; National Natural Science Foundation of China 31171271 |
PMID:22080564 | THIS RESOURCE IS NO LONGER IN SERVICE | OMICS_01856, nlx_153892, biotools:animal_tfdb | https://bio.tools/animal_tfdb | SCR_001624 | Animal Transcription Factor Database | 2026-08-29 11:29:19 | 292 | ||||
|
Human Gene Mutation Database Resource Report Resource Website 1000+ mentions |
Human Gene Mutation Database (RRID:SCR_001621) | HGMD | data or information resource, database | Curated database of known (published) gene lesions responsible for human inherited disease. | gene, disease, gene lesion, mutation, deletion, insertion, duplication, rearrangement, nuclear gene, functional polymorphism, bio.tools |
is listed by: OMICtools is listed by: bio.tools is listed by: Debian is related to: BIOBASE Corporation has parent organization: Cardiff University; Wales; United Kingdom |
Inherited disease | PMID:22948725 PMID:20368137 PMID:20038494 PMID:19348700 PMID:18428754 PMID:18245393 PMID:12754702 PMID:10612821 PMID:9399854 PMID:9066272 PMID:8882888 |
Free, Freely available | nlx_153887, SCR_001888, biotools:hgmd, nif-0000-10459, OMICS_00281 | http://www.hgmd.cf.ac.uk/ac/index.php, https://bio.tools/hgmd, | SCR_001621 | The Human Gene Mutation Database, The Human Gene Mutation Database at the Institute of Medical Genetics in Cardiff | 2026-08-29 11:29:10 | 2682 | ||||
|
Brain Windows Resource Report Resource Website |
Brain Windows (RRID:SCR_001226) | blog, data or information resource, narrative resource | Blog devoted to reporting, analyzing and interpreting the latest results in the field of brain imaging technologies, particularly at the levels of systems, circuits, single cells and below. The site content is produced by Andrew Hires. | neuroscience, blog, writing, journalism, brain imaging | Freely available for viewing | nlx_30989 | SCR_001226 | Brain Windows Blog | 2026-08-29 11:29:11 | 0 | |||||||||
|
DIAN - Dominantly Inherited Alzheimer Network Resource Report Resource Website |
DIAN - Dominantly Inherited Alzheimer Network (RRID:SCR_000812) | DIAN | biomaterial supply resource, material resource, tissue bank | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 23,2022. An international research partnership of leading scientists determined to understand a rare form of Alzheimers disease that is caused by a gene mutation and to establish a research database and tissue repository to support research on Alzheimers disease by other investigators around the world. One goal of DIAN is to study possible brain changes that occur before Alzheimers disease is expressed in people who carry an Alzheimers disease mutation. Other family members without a mutation will serve as a comparison group. People in families in which a mutation has been identified will be tracked in order to detect physical or mental changes that might distinguish people who inherited the mutation from those who did not. DIAN currently involves eleven outstanding research institutions in the United States, United Kingdom, and Australia. John C. Morris, M.D., Friedman Distinguished Professor of Neurology at Washington University School of Medicine in St. Louis, is the principal investigator of the project., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025. |
is listed by: One Mind Biospecimen Bank Listing is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) is related to: National Cell Repository for Alzheimer's Disease has parent organization: Washington University School of Medicine in St. Louis; Missouri; USA |
NIA U01AG032438 | PMID:23139856 PMID:24131566 |
THIS RESOURCE IS NO LONGER IN SERVICE | nlx_149316 | SCR_000812 | Dominantly Inherited Alzheimer Network (DIAN), Dominantly Inherited Alzheimer Network | 2026-08-29 11:29:11 | 0 | ||||||
|
Ridom SpaServer Resource Report Resource Website 100+ mentions |
Ridom SpaServer (RRID:SCR_001460) | data or information resource, database | Database of information of spa-typing of MRSA, or Staphylococcus aureus, that can be used to collate and harmonize data from various geographic regions. | database, information, staphylococcus aureus, bacteria, mrsa, FASEB list | PMID:14662923 | Free, Available for download, Freely available | nif-0000-08852 | SCR_001460 | SpaServer | 2026-08-29 11:29:09 | 322 | ||||||||
|
JISC Blog Resource Report Resource Website |
JISC Blog (RRID:SCR_000928) | blog, data or information resource, narrative resource | A blog of up-to-the-minute insights into the innovative use of technology in further and higher education. | technology, blog, education, | has parent organization: JISC | Public | nlx_57936 | SCR_000928 | 2026-08-29 11:29:16 | 0 |
Can't find your Tool?
We recommend that you click next to the search bar to check some helpful tips on searches and refine your search firstly. Alternatively, please register your tool with the SciCrunch Registry by adding a little information to a web form, logging in will enable users to create a provisional RRID, but it not required to submit.
Welcome to the dkNET Resources search. From here you can search through a compilation of resources used by dkNET and see how data is organized within our community.
You are currently on the Community Resources tab looking through categories and sources that dkNET has compiled. You can navigate through those categories from here or change to a different tab to execute your search through. Each tab gives a different perspective on data.
If you have an account on dkNET then you can log in from here to get additional features in dkNET such as Collections, Saved Searches, and managing Resources.
Here is the search term that is being executed, you can type in anything you want to search for. Some tips to help searching:
If you are logged into dkNET you can add data records to your collections to create custom spreadsheets across multiple sources of data.
Here are the facets that you can filter the data by.
If you have any further questions please check out our FAQs Page to ask questions and see our tutorials. Click this button to view this tutorial again.
The NIDDK Information Network (dkNET) serves the needs of basic and clinical investigators by providing seamless access to large pools of data and research resources relevant to the mission of The National Institute of Diabetes Digestive and Kidney Diseases (NIDDK). dkNET is hosted at University of California San Diego, and is supported by NIH NIDDK grant U24DK097771.
Email: info_at_ dknet.org
