Tools   Select Another Resource Report Type

https://www.illumina.com/systems/sequencing-platforms/nextseq-1000-2000.html

Sequencing system supports range of methods such as exome sequencing, target enrichment, single-cell profiling.

Proper citation: Illumina: NextSeq 2000 system (RRID:SCR_023614) Copy   

•   Source: SciCrunch Registry

https://www.ionpath.com/mibiscope/

Imaging platform, enabling phenotypic profiling and spatial analysis of tissue microenvironment. Enables over 40 markers to be visualized simultaneously with single step staining and single step imaging.

Proper citation: Ionpath: MIBIscope System (RRID:SCR_023613) Copy   

•   Source: SciCrunch Registry

https://www.htximaging.com/htx-m5-sprayer

Sprayer builds on capabilities of HTX TM-Sprayer providing innovative M5 chassis, high velocity stage and heated sample holder drawer. Sample plate holder is mounted on drawer mechanism to allow easy loading of samples, better protection of user and better alignment of various plate types. New High-Velocity XY stage allows nozzle displacement speed of up to 5,600mm/min and expands process range. Super dry spray can be achieved at high flow rates of solvent further improving instrument performance. E/Z trough gutter design improves chemical containement and is easy to remove and clean. Bulkhead connectors are directly mounted on it to also allow easy access to in line filter.

Proper citation: HTXImaging: M5 Sprayer (RRID:SCR_023733) Copy   

•   Source: SciCrunch Registry

https://www.gaain.org/

Open access integrated research platform, which links scientists, shared data, and analysis tools to accelerate Alzheimer’s disease research, disease preventions, treatments and cure. Unites diverse and geographically distributed network of data partners to foster cohort discovery, collaboration and sharing. Researchers can discover clinical, genetic, imaging and other data collected across many independent studies.

Proper citation: Global Alzheimers Association Interaction Network (RRID:SCR_023699) Copy   

•   Source: SciCrunch Registry

https://www.htximaging.com/tm-sprayer

Allows users to adjust both gas flow rate and nozzle velocity to control drying time, preventing analyte delocalization and formation of large matrix crystals, known to create hot spots on MALDI images. Allows to heat matrix solution as it is being applied to their sample. By increasing temperature of matrix solution, absorption of matrix into sample is increased, resulting in greater MALDI image resolution.

Proper citation: HTXImaging: TM-Sprayer (RRID:SCR_023732) Copy   

•   Source: SciCrunch Registry

https://andor.oxinst.cn/products/scmos-camera-series/zyla-4-2-scmos

Zyla 4.2 PLUS is the latest sCMOS technology advancement from Andor. At its heart, Zyla 4.2 PLUS benefits from latest generation sCMOS sensor technology, delivering a further 10 % boost in QE, resulting in an unprecedented 82% QEmax.

Proper citation: Andor: Zyla 4.2 sCMOS (RRID:SCR_023610) Copy   

•   Source: SciCrunch Registry

https://www.htximaging.com/htx-m3-sprayer

Sample preparation platform offering automated advanced MALDI matrix sprayer.

Proper citation: HTXImaging: M3+ Sprayer (RRID:SCR_023731) Copy   

•   Source: SciCrunch Registry

https://bioconductor.org/packages/release/bioc/html/mia.html

Software R package with several tools for microbiome data analysis.

Proper citation: mia (RRID:SCR_023619) Copy   

•   Source: SciCrunch Registry

https://www.thermofisher.com/us/en/home/industrial/mass-spectrometry/liquid-chromatography-mass-spectrometry-lc-ms/lc-ms-systems/orbitrap-lc-ms/orbitrap-tribrid-mass-spectrometers/orbitrap-eclipse-tribrid-mass-spectrometer.html

Mass spectrometer designed for most difficult analytical challenges. Incorporates inventions in ion transmission and control, extended m/z range, and real-time decision making. System suited for proteomics, structural biology, small-molecule, and biopharmaceutical characterization experiments.

Proper citation: Thermo Fisher: Orbitrap Eclipse Tribrid mass spectrometer (RRID:SCR_023618) Copy   

•   Source: SciCrunch Registry

https://www.cancergenomeinterpreter.org/home

Platform that systematizes interpretation of cancer genomes and makes it automatic. Web tool to annotate genomic alterations and interpret their possible role in tumorigenesis and in response to anti cancer therapies. Used to support identification of tumor alterations that drive disease and/or which may be therapeutically actionable. Analyses mutations including single nucleotide changes and small insertions/deletions, copy number alterations including gene amplifications and deletions and translocations.

Proper citation: Cancer Genome Interpreter (RRID:SCR_023752) Copy   

•   Source: SciCrunch Registry

https://www.viewpoint.fr/product/zebrafish/cardiology/microzebralab

Software tool to extract cardiovascular parameters from transmitted light videos of zebrafish embryos or larvae. Used to investigate live and in non-invasive way scope of zebrafish larvae physiological parameters. Measures heartbeat and blood flow.

Proper citation: ViewPoint MicroZebraLab (RRID:SCR_023750) Copy   

•   Source: SciCrunch Registry

https://awi.cuhk.edu.cn/KinasePhos/download.html

Software tool for redesign and expansion of prediction on kinase specific phosphorylation sites. Machine learning based kinase specific phosphorylation site prediction tool.

Proper citation: KinasePhos 3.0 (RRID:SCR_023595) Copy   

•   Source: SciCrunch Registry

https://github.com/citiususc/BigSeqKit

Software parallel Big Data toolkit to process FASTA and FASTQ files at scale. Used to manipulate FASTA/Q files at scale with speed and scalability at its core.

Proper citation: BigSeqKit (RRID:SCR_023592) Copy   

•   Source: SciCrunch Registry

http://tiger.bsc.es

Resource enables integrative exploration of genetic and epigenetic basis of development of Type 2 Diabetes, together with other associated functional, molecular and clinical data, centered in biology and role of pancreatic beta cells.The gene expression regulatory variation landscape of human pancreatic islets.

Proper citation: TIGER Data Portal (RRID:SCR_023626) Copy   

•   Source: SciCrunch Registry

https://www.zeiss.com/microscopy/en/products/software/zeiss-zen-lite.html

Software tool for basic image acquisition and analysis. Zeiss ZEN microscopy software to control of axiocam microscope cameras, image transformation and measurements, image processing, image alignment for correlative microscopy, various visualization options.

Proper citation: Zeiss Zen Lite (RRID:SCR_023747) Copy   

•   Source: SciCrunch Registry

https://gadm.org/

Platform provides maps and spatial data for all countries and their sub-divisions. You can browse maps or download data to make your own maps.

Proper citation: GADM (RRID:SCR_023746) Copy   

•   Source: SciCrunch Registry

https://maayanlab.cloud/X2K

Web service to predict involvement of upstream cell signaling pathways, given signature of differentially expressed genes. Used to linking expression signatures to upstream cell signaling networks.

Proper citation: X2K Web (RRID:SCR_023624) Copy   

•   Source: SciCrunch Registry

https://www.bibliometrix.org/home/

Software R package for comprehensive science mapping analysis. Used for quantitative research in scientometrics and bibliometrics that includes all main bibliometric methods of analysis.

Proper citation: bibliometrix (RRID:SCR_023744) Copy   

•   Source: SciCrunch Registry

https://d2h2.maayanlab.cloud/

Platform that facilitates data driven hypothesis generation for diabetes and related metabolic disorder research community. Curated transcriptomics datasets from various Type 2 Diabetes studies are made available for download, visualization, and enrichment analysis.

Proper citation: Diabetes Data and Hypothesis Hub (RRID:SCR_023629) Copy   

•   Source: SciCrunch Registry

https://segment-anything.com/

Promptable segmentation system with zero shot generalization to unfamiliar objects and images, without need for additional training. Github repository provides code for running inference with SegmentAnything Model, links for downloading trained model checkpoints, and example notebooks that show how to use the model.

Proper citation: Segment Anything Model (RRID:SCR_023680) Copy   

•   Source: SciCrunch Registry