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https://www.questionpro.de/

Survey software to design and host questionaires. Used as survey creator. Enables to choose from survey question types ranging from net promoter score questions for efficient customer satisfaction surveys to advanced multiple-choice and logic-based research questions.

Proper citation: QuestionPro (RRID:SCR_023309) Copy   

•   Source: SciCrunch Registry

https://lookerstudio.google.com/

Former name Google Data Studio, is online tool for converting data into customizable informative reports and dashboards introduced by Google on March 15, 2016 as part of enterprise Google Analytics 360 suite. Online service for graphic data visualization.

Proper citation: Google Looker Studio (RRID:SCR_023549) Copy   

•   Source: SciCrunch Registry

https://github.com/IGGoncalves/PhysiCOOL

Software Python library tailored to perform model calibration studies with PhysiCell. Generalized framework for model Calibration and Optimization Of modeLing projects.

Proper citation: PhysiCOOL (RRID:SCR_023305) Copy   

•   Source: SciCrunch Registry

https://github.com/Nanostring-Biostats/GeomxTools/

Software package contains tools for analyzing data from NanoString GeoMx Digital Spatial Profiler. Provides functions to read, quality control and normalize starting from Nanostring DCC and PKC files generated from NanoString GeoMx DSP. Contains definition of NanoStringGeoMxSet class which inherits from Biobase’s ExpressionSet class and NanoStringRCCSet class.

Proper citation: NanoString GeoMx Tools (RRID:SCR_023424) Copy   

•   Source: SciCrunch Registry

https://github.com/AIRI-Institute/DeepCT

Software tool can learn complex interconnections of epigenetic features and infer unmeasured data from any available input. Can learn cell type-specific properties, build biologically meaningful vector representations of cell types, and utilize these representations to generate cell type-specific predictions of effects of non-coding variations in human genome.

Proper citation: DeepCT (RRID:SCR_023302) Copy   

•   Source: SciCrunch Registry

https://choishingwan.gitlab.io/EraSOR/

Software Python tool for removing bias introduced from having overlapped samples between base GWAS data and target genotype data for Polygenic Risk Score analyses. Used for adjusting inflation in PRS prediction and association statistics in presence of sample overlap or close relatedness between GWAS and target samples.

Proper citation: EraSOR (RRID:SCR_023544) Copy   

•   Source: SciCrunch Registry

https://non-igg-ab.creative-biolabs.com/non-igg-antibody-application-for-clinical-diagnosis.htm

Provides high quality custom non-IgG antibody services.

Proper citation: Creative Biolabs Non-IgG Antibody Isotypes Services (RRID:SCR_023640) Copy   

•   Source: SciCrunch Registry

https://www.hamamatsu.com/jp/en/product/life-science-and-medical-systems/digital-slide-scanner/C13220-01.html

NanoZoomer series is family of whole slide scanners that rapidly scan glass slides to convert them to digital data. NanoZoomer S360 is ideal for use in hospitals and clinical laboratories.

Proper citation: Hamamatsu: NanoZoomer S360 Digital slide scanner (RRID:SCR_023761) Copy   

•   Source: SciCrunch Registry

https://www.hamamatsu.com/jp/en/product/life-science-and-medical-systems/digital-slide-scanner/C13239-01.html

NanoZoomer series is family of whole slide scanners that rapidly scan glass slides to convert them to digital data. NanoZoomer S210 provides high performance capable of handling large number of slides.

Proper citation: Hamamatsu: NanoZoomer S210 Digital slide scanner (RRID:SCR_023760) Copy   

•   Source: SciCrunch Registry

https://www.hamamatsu.com/jp/en/product/life-science-and-medical-systems/kinetic-plate-imager/C15711-02.html

Kinetic plate imager optimized for 96-, 384-, and 1536-well for high throughput screening, enabling whole microplate imaging and simultaneous injections to all wells. System achieves high sensitivity imaging with qCMOS sensor, and highly accurate and repeatable micro-dispensing by adopting 1536 ch dispensing unit capable of dispensing variable volumes. By combining optional parts, robot free semi automation system can be built according to user's purpose.

Proper citation: Hamamatsu: FDSS-GX Kinetic Plate Imager (RRID:SCR_023759) Copy   

•   Source: SciCrunch Registry

https://zeppelin.apache.org/

Web based notebook that enables data driven, interactive data analytics and collaborative documents with SQL, Scala, Python, R and more. Multi purposed web based notebook which brings data ingestion, data exploration, visualization, sharing and collaboration.

Proper citation: Apache Zeppelin (RRID:SCR_023637) Copy   

•   Source: SciCrunch Registry

http://www.swisstargetprediction.ch/

Web tool to estimate the most probable macromolecular targets of small molecule, assumed as bioactive. Prediction is founded on combination of 2D and 3D similarity with library of known actives on proteins from three different species.

Proper citation: SwissTargetPrediction (RRID:SCR_023756) Copy   

•   Source: SciCrunch Registry

https://sciex.com/

Manufacturer of mass spectrometry instrumentation used in biomedical and environmental applications. Originally started by scientists from the University of Toronto Institute for Aerospace Studies, it is now part of Danaher Corporation with the SCIEX R&D division still located in Toronto, Canada.

Proper citation: Sciex (RRID:SCR_023651) Copy   

•   Source: SciCrunch Registry

http://naturalscenesdataset.org/

Portal for large scale fMRI dataset conducted at ultra high field strength at Center of Magnetic Resonance Research at University of Minnesota. Dataset consists of whole brain, high resolution fMRI measurements of healthy adult subjects while they viewed thousands of color natural scenes over course of scan sessions. While viewing these images, subjects were engaged in continuous recognition task in which they reported whether they had seen each given image at any point in experiment. These data constitute massive benchmark dataset for computational models of visual representation and cognition, and can support wide range of scientific inquiry.

Proper citation: Natural Scenes Dataset (RRID:SCR_023648) Copy   

•   Source: SciCrunch Registry

https://www.intelligent-imaging.com/slidebook.php

Digital microscopy software for research microscopy. It comes standard with drivers to control numerous instruments in and around the microscope. When online, data is acquired in a native-3D format over time, color and specimen locations in customizable experiment protocols. Data can be analyzed by a wide variety of tools for image processing including mathematical operations, statistics functions, analysis scripting and import to/export from MATLAB. Additional modules are available for special applications ranging from deconvolution to photomanipulation to multiphoton.

Proper citation: SlideBook (RRID:SCR_014423) Copy   

•   Source: SciCrunch Registry

https://www.bdbiosciences.com/en-us/products/instruments/flow-cytometers/research-cell-analyzers/bd-facsymphony-a3

Fluorescence activated cell analyzing instrument by BD Biosciences. Allows for the simultaneous detection of up to 30 parameters and 28 colors.

Proper citation: BD Biosciences: FACSymphony A3 Cell Analyzer (RRID:SCR_023644) Copy   

•   Source: SciCrunch Registry

https://www.licor.com/bio/support/answer-portal/imaging-systems/odyssey-classic.html

Odyssey Classic Imaging System provides flexible, multifunctional platform to accommodate variety of applications. Western blot imager, plate reader, slide scanner, luminescence imager. Performs membrane-, plate-, gel-, and slide based assays.

Proper citation: LI-COR: Odyssey Classic Imager (RRID:SCR_023765) Copy   

•   Source: SciCrunch Registry

http://www.partec.de

THIS RESOURCE IS NO LONGER IN SERVICE. Documented on June 1,2023. Partec uses FloMax software on most cytometers, which produces FCS 3.0 compliant files. FloMax rescales the fluorescent data on the acquisition display without changing the stored values.

Proper citation: partec flomax (RRID:SCR_014026) Copy   

•   Source: SciCrunch Registry

https://www.hamamatsu.com/jp/en/product/life-science-and-medical-systems/digital-slide-scanner/C16300-01.html

NanoZoomer series is family of whole slide scanners that rapidly scan glass slides to convert them to digital data. NanoZoomer S20 is compact, high speed, and adaptable scanner.

Proper citation: Hamamatsu: NanoZoomer S20 Digital slide scanner (RRID:SCR_023764) Copy   

•   Source: SciCrunch Registry

https://download.cytivalifesciences.com/cellanalysis/download_data/incell/incell_docs/IN%20Cell%20Analyzer%202200%20User%20Manual.pdf

Cell imaging system for fast, automated imaging in fixed and live cells. Instrument can rapidly image cells using laser autofocusing, LED light source and CMOS camera.

Proper citation: GE: Healthcare: IN Cell Analyzer 2200 (RRID:SCR_023616) Copy   

•   Source: SciCrunch Registry