Searching the RRID Resource Information Network
Are you sure you want to leave this community? Leaving the community will revoke any permissions you have been granted in this community.
SciCrunch Registry is a curated repository of scientific resources, with a focus on biomedical resources, including tools, databases, and core facilities - visit SciCrunch to register your resource.
| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
BlobTools2 Resource Report Resource Website 100+ mentions |
BlobTools2 (RRID:SCR_023351) | data analysis software, data processing software, software application, software resource | Software suite for identifying and isolating non-target data in draft and publicly available genome assemblies. Used to process assembly, read and analysis files for fully reproducible interactive exploration in browser-based Viewer. Used for interactive quality assessment of genome assemblies .BlobTools2 is reimplementation of BlobTools, written in Python 3 with fully modular design to make creating new datasets and adding additional analysis types easier. | interactive quality assessment, genome assemblies, identifying and isolating non-target data, genome, QC, filtering, process assembly, read and analysis files, |
is related to: Blobtools is related to: Blobtoolkit |
BBSRC Bioinformatics and Biological Resources fund | PMID:32071071 | Free, Available for download, Freely available | https://github.com/blobtoolkit/blobtoolkit | SCR_023351 | blobtoolkit | 2026-08-29 11:28:26 | 383 | ||||||
|
Diagenode: Bioruptor Resource Report Resource Website 50+ mentions |
Diagenode: Bioruptor (RRID:SCR_023470) | instrument resource | Sonication system for optimal shearing of biological and chemical samples. | Diagenode, bioruptor, sonication system, biological and chemical samples shearing, samples shearing, instrument, equipment, USEDit | is listed by: USEDit | Restricted | SCR_023470 | Bioruptor | 2026-08-29 11:28:20 | 92 | |||||||||
|
RIsearch Resource Report Resource Website 1+ mentions |
RIsearch (RRID:SCR_023503) | simulation software, software application, software resource | Software tool for prediction of RNA–RNA, RNA–DNA, and DNA–DNA interactions. Both RIsearch1 and RIsearch2 enable quick localisation of potential near complementary interactions between given query and target sequences. RIsearch1 performs computation with whole sequences. RIsearch2 focuses on perfect complementary seed regions and extends them on both ends. User defined seed and extension constraints makes RIsearch2 applicable to all kinds of interaction predictions (e.g., siRNA and Cas9–gRNA off-target predictions). | interaction predictions, RNA–RNA interactions, RNA–DNA interactions, DNA–DNA interactions, | Danish Center for Scientific Computing ; Danish Council for Independent Research ; Danish Council for Strategic Research ; Innovation Fund Denmark |
PMID:22923300 PMID:28108657 |
Free, Available for download, Freely available | SCR_023503 | RIsearch2, RIsearch1 | 2026-08-29 11:28:28 | 5 | ||||||||
|
GloMax Discover System Software and Firmware Resource Report Resource Website 1+ mentions |
GloMax Discover System Software and Firmware (RRID:SCR_023469) | software resource | System includes firmware and plate reader software for reading absorbance, fluorescence, or luminescence in 96-well plates. | Promega, plate reader software, reading absorbance, reading fluorescence, reading luminescence, 96-well plates. | Restricted | SCR_023469 | Promega GloMax Discover System Software and Firmware | 2026-08-29 11:28:27 | 2 | ||||||||||
|
Korea Statistical Information Service Resource Report Resource Website 50+ mentions |
Korea Statistical Information Service (RRID:SCR_023565) | data access protocol, data or information resource, software resource, web service | Republic of Korea e-Government platform for major domestic, international and North Korean statistics. Web service provides official statistics produced by statistical agencies covering more than 500 subject matters as well as the latest data on international finance and economy from international organizations i.e. IMF, World Bank, OECD. | Korean statistics, public data, international finance and economy, | Free, Freely available | SCR_023565 | KOSIS | 2026-08-29 11:28:28 | 72 | ||||||||||
|
Open Molecular Software Foundation Resource Report Resource Website |
Open Molecular Software Foundation (RRID:SCR_023440) | OMSF | nonprofit organization | Nonprofit organization with mission to advance molecular sciences by building open source software and sustainable communities for research software development. Focuses on working with hosted projects to support their software development and provide operational support, while also pursuing own community-service and community-building projects. Uses fiscal sponsorship as business model available to nonprofit organizations to assemble resources, provide support and advance open source projects in molecular sciences aligned with charitable purpose and general public interest. | building open research infrastructure, molecular sciences, | SCR_023440 | 2026-08-29 11:28:20 | 0 | |||||||||||
|
ObjectFinder Resource Report Resource Website 1+ mentions |
ObjectFinder (RRID:SCR_023319) | 2d spatial image, 3d spatial image, 3d visualization software, data or information resource, data processing software, data visualization software, image, image analysis software, software application, software resource | Software image analysis package for 3D object recognition in volumetric images developed for neuroscience research purposes. MATLAB application to recognize small structures in large volumetric image, plot their statistics and perform quantitative analysis such as nearest neighbor and colocalization analysis. Used to detect fluorescently labeled synapses in neuronal image stacks acquired using confocal or super resolution microscopes. | 3D object recognition, volumetric images, neuroscience, recognize small structures in large volumetric images, detect fluorescently labeled synapses, neuronal image stacks, | is related to: MATLAB | https://lucadellasantina.github.io/ObjectFinder/ | SCR_023319 | 2026-08-29 11:27:57 | 7 | ||||||||||
|
xyz2swc Resource Report Resource Website 1+ mentions |
xyz2swc (RRID:SCR_023317) | data access protocol, software resource, web service | Web service that converts all 30 reconstruction formats (and 65 variations) described in scientific literature into SWC standard. Service is available open-source through user-friendly browser interface and Application Programming Interface. | reconstruction formats conversion, formats conversion into SWC standard, SWC standard, | is related to: NeuroMorpho.Org | Free, Freely available | https://neuromorpho.org/xyz2swc/ | SCR_023317 | 2026-08-29 11:28:19 | 3 | |||||||||
|
Benchmark of human deep intronic variation Resource Report Resource Website 1+ mentions |
Benchmark of human deep intronic variation (RRID:SCR_023315) | software resource | Repository of code, data, and documentation to reproduce computational evaluation performed to identify the best tools/models to predict genetic variation in deep intronic regions of human genome. | reproduce computational evaluation, predict genetic variation, deep intronic regions, human genome | is related to: Variant Prediction Tools Evaluation | DOI:10.1101/2023.02.17.528928 | Free, Available for download, Freely available | SCR_023315 | Benchmark of deep intronic variation | 2026-08-29 11:28:26 | 1 | ||||||||
|
Variant Prediction Tools Evaluation Resource Report Resource Website 1+ mentions |
Variant Prediction Tools Evaluation (RRID:SCR_023314) | VETA | data analysis software, data processing software, software application, software resource | Software tool that analyses performance of several variant prediction methods at different levels. Used to benchmark variant effect predictors from VCF files. | variant prediction, benchmark variant effect predictors, VCF files | is related to: Benchmark of human deep intronic variation | DOI:10.3389/fcvm.2022.975478 | Free, Available for download, Freely available | https://samtools.github.io/hts-specs/VCFv4.2.pdf | SCR_023314 | Variant prEdiction Tools evAluation | 2026-08-29 11:27:57 | 2 | ||||||
|
Michigan Genomics Initiative Resource Report Resource Website 1+ mentions |
Michigan Genomics Initiative (RRID:SCR_023556) | MGI | biobank, data or information resource, material storage repository, portal, project portal, service resource, storage service resource | Collaborative research effort among physicians, researchers, and patients at the University of Michigan with goal of combining patient electronic health record data with corresponding genetic data to gain novel biomedical insights. Biobank linking genotypes and electronic clinical records in Michigan Medicine patients. MGI participants agree to provide study team with access to EHR data for clinical information and biospecimen including blood or saliva. | combining patient electronic health record data, genetic data, genotypes, electronic clinical records | has parent organization: Michigan State University; Michigan; USA | PMID:36819667 | Restricted | SCR_023556 | 2026-08-29 11:28:00 | 6 | ||||||||
|
DendroX Resource Report Resource Website 1+ mentions |
DendroX (RRID:SCR_023434) | 4d visualization software, data processing software, data visualization software, software application, software resource, source code | Web application for multi-level multi-cluster selections in dendrogram. Provides interactive visualization of dendrogram in which users can divide dendrogram at any level and into any number of clusters. | cluster, heatmap, visualization, dendrogram, cluster analysis, TypeScript | Second Military Medical University 2017JZ11; Shanghai Jiading District Health Commission 2020-ZD-01 |
Free, Available for download, Freely available | https://frlender.github.io/dendrox-app/ | SCR_023434 | 2026-08-29 11:28:27 | 1 | |||||||||
|
roifile Resource Report Resource Website 1+ mentions |
roifile (RRID:SCR_023331) | software library, software resource, software toolkit | Software Python package to read, write, create, and plot ImageJ ROI format, an undocumented and ImageJ application specific format to store regions of interest, geometric shapes, paths, text, and whatnot for image overlays. | Python package, plot ImageJ ROIs, store regions of interest, geometric shapes, paths, text, image overlays | Free, Available for download, Freely available | SCR_023331 | 2026-08-29 11:27:57 | 1 | |||||||||||
|
NuAire: LabGard ES NU-425-600E Biosafety Cabinet Resource Report Resource Website |
NuAire: LabGard ES NU-425-600E Biosafety Cabinet (RRID:SCR_023448) | instrument resource | Designed for laboratory safety, proper ergonomics, and energy efficiency.Models available from GMI are 2-ft. NU-425-200, 3-ft. NU-425-300, 4-ft. NU-425-400, and 6-ft. NU-425-600. LabGard NU-425 biosafety cabinets feature control system to control blower, lights, and outlets, Minihelic gauge that measures plenum performance, and Attenumount vibration control system for attenuation of sound and vibration. Cabinets are equipped with highly efficient, energy-saving motor/blower to increase filter life and cut electricity costs. | Instrument, equipment, USEDit, biosafety cabinet, NuAire, LabGard, energy saver, | is listed by: USEDit | Restricted | SCR_023448 | Type A2 Biosafety Cabinets, NuAire LabGard ES (Energy Saver) NU-425 Class II | 2026-08-29 11:28:27 | 0 | |||||||||
|
Harmony Resource Report Resource Website 10+ mentions |
Harmony (RRID:SCR_023543) | data analysis software, data processing software, software application, software resource | Software tool designed by PerkinElmer for high content screening systems. Used to quantify complex cellular phenotypes. High content analysis software. | PerkinElmer, high content screening systems, quantify complex cellular phenotypes, | Restricted | SCR_023543 | Harmony High-Content Imaging and Analysis Software, Harmony 5.0, Harmony 5.1 | 2026-08-29 11:28:00 | 22 | ||||||||||
|
Fasteris Next Generation Sequencing Services Resource Report Resource Website 1+ mentions |
Fasteris Next Generation Sequencing Services (RRID:SCR_023421) | service resource | Fasteris, the brand of Genesupport SA for all Life Science Services, provides Next Generation Sequencing and Sanger sequencing services.Offers customized approaches and consulting services at each step of your projects. | USEDit, ABRF, Life Science Services, Fasteris, Genesupport SA, Next Generation Sequencing service, Sanger sequencing service, |
is listed by: ABRF CoreMarketplace is related to: USEDit |
Restricted | ABRF_1710 | https://coremarketplace.org/?FacilityID=1710&citation=1 | SCR_023421 | Fasteris NGS Services | 2026-08-29 11:28:19 | 1 | |||||||
|
GE Volume Viewer Resource Report Resource Website 1+ mentions |
GE Volume Viewer (RRID:SCR_023417) | data processing software, data visualization software, software application, software resource | Software tool to provide data 3D visualization and processing. Used for reading and comparing CT, MR, 3D X-ray, PET, and PET/CT datasets. | GE Healthcare, 3D image processing, 3D image visualization, 3D image | Restricted | SCR_023417 | Volume Viewer | 2026-08-29 11:28:19 | 2 | ||||||||||
|
Research Center Jülich; Jülich; Germany Resource Report Resource Website 1+ mentions |
Research Center Jülich; Jülich; Germany (RRID:SCR_023416) | institution | One of the largest interdisciplinary research centers in Europe for inspiring science exchange from all over the world. It is member of the Helmholtz Association. | interdisciplinary research center, Europe, science exchange |
is parent organization of: BigBrain is parent organization of: DataLad is parent organization of: Julich-Brain Cytoarchitectonic Atlas |
SCR_023416 | Jülich Research Institute; Jülich; Germany, Forschungszentrum Jülich, Research Centre Jülich, Research Center Jülich; Jülich; Germany | 2026-08-29 11:28:27 | 1 | ||||||||||
|
Slide-seq Pipeline Resource Report Resource Website 1+ mentions |
Slide-seq Pipeline (RRID:SCR_023379) | data analysis software, data processing software, software application, software resource | Software pipeline developed in collaboration with BRAIN Initiative Cell Census Network and BRAIN Initiative Cell Atlas Network. Supports processing of spatial transcriptomic data generated with Slide-seq commercialized as Curio Seeker assay. | single cell data, spatial transcriptomics, barcode correction, reads alignment, aligns reads to genome, |
is related to: BICCN has parent organization: Broad Institute is organization facet of: BRAIN Initiative Cell Atlas Network |
Hertz Graduate Fellowship ; National Science Foundation Graduate Research Fellowship Program ; NIH Early Independence Award ; NIH New Innovator Award ; Schmidt Fellows Program at the Broad Institute |
PMID:30923225 | Free, Available for download, Freely available | https://github.com/broadchenf/Slideseq/tree/master/BeadSeq%20Code | https://github.com/broadinstitute/warp/tree/master/pipelines/skylab/slideseq | SCR_023379 | Slide-seq, slideseq, SlideSeq, SlideSeq Pipeline | 2026-08-29 11:28:27 | 2 | |||||
|
CaT-z Resource Report Resource Website |
CaT-z (RRID:SCR_023399) | software resource | Software tool for 3D tracking and automatic classification of rodent behavior. Used for acquisition, annotation, and automatic behavioral profile characterization of laboratory rodents' RGB-D videos. Utilizes video segmentation, tracking of body parts, and automated classification of behaviors through machine learning and computer vision methods. Setup uses low costing RGB-D cameras for tracking behaviors in various environments. Software includes GUI interfaces for video acquisition, annotation, and processing of behavioral data. Software is capable of automated behavior detection with only 30 minutes of annotated video. | 3D tracking, automatic classification, rodent behavior, behavioral analysis, individual rats, automated behavior detection, OpenBehavior | is listed by: OpenBehavior | Portugal National Funds | DOI:10.3758/s13428-020-01381-9 | Free, Available for download, Freely available | https://edspace.american.edu/openbehavior/project/cat-z/ | SCR_023399 | Classification and Tracking in depth (z) | 2026-08-29 11:28:19 | 0 |
Can't find your Tool?
We recommend that you click next to the search bar to check some helpful tips on searches and refine your search firstly. Alternatively, please register your tool with the SciCrunch Registry by adding a little information to a web form, logging in will enable users to create a provisional RRID, but it not required to submit.
Welcome to the dkNET Resources search. From here you can search through a compilation of resources used by dkNET and see how data is organized within our community.
You are currently on the Community Resources tab looking through categories and sources that dkNET has compiled. You can navigate through those categories from here or change to a different tab to execute your search through. Each tab gives a different perspective on data.
If you have an account on dkNET then you can log in from here to get additional features in dkNET such as Collections, Saved Searches, and managing Resources.
Here is the search term that is being executed, you can type in anything you want to search for. Some tips to help searching:
If you are logged into dkNET you can add data records to your collections to create custom spreadsheets across multiple sources of data.
Here are the facets that you can filter the data by.
If you have any further questions please check out our FAQs Page to ask questions and see our tutorials. Click this button to view this tutorial again.
The NIDDK Information Network (dkNET) serves the needs of basic and clinical investigators by providing seamless access to large pools of data and research resources relevant to the mission of The National Institute of Diabetes Digestive and Kidney Diseases (NIDDK). dkNET is hosted at University of California San Diego, and is supported by NIH NIDDK grant U24DK097771.
Email: info_at_ dknet.org
