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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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parmigene Resource Report Resource Website 1+ mentions |
parmigene (RRID:SCR_024285) | software resource, software toolkit | Software R package for parallel estimation of mutual information based on entropy estimates from k-nearest neighbors distances and algorithms for reconstruction of gene regulatory networks. | parallel estimation, mutual information, entropy estimates from k-nearest neighbors distances, reconstruction of gene regulatory networks, | is listed by: Debian | PMID:21531770 | Free, Available for download, Freely available, | OMICS_16887 | https://sources.debian.org/src/r-cran-parmigene/ | SCR_024285 | Parallel Mutual Information Estimation for Gene Network Reconstruction | 2026-08-29 11:29:10 | 1 | ||||||
|
pcapp Resource Report Resource Website 1+ mentions |
pcapp (RRID:SCR_024287) | software resource, software toolkit | Software R package provides functions for principal component analysis by projection pursuit. | principal component analysis, projection pursuit, | is listed by: Debian | Free, Available for download, Freely available, | https://sources.debian.org/src/r-cran-pcapp/ | SCR_024287 | 2026-08-29 11:29:10 | 1 | |||||||||
|
psychotree Resource Report Resource Website |
psychotree (RRID:SCR_024288) | software resource, software toolkit | Software R package for recursive partitioning based on psychometric models, employing general MOB algorithm to obtain Bradley-Terry trees, Rasch trees, rating scale and partial credit trees, and MPT trees, trees for 1PL, 2PL, 3PL and 4PL models and generalized partial credit models. | recursive partitioning based on psychometric models, recursive partitioning, psychometric models, | is listed by: Debian | Free, Available for download, Freely available, | https://sources.debian.org/src/r-cran-psychotree/ | SCR_024288 | 2026-08-29 11:29:01 | 0 | |||||||||
|
University of Pittsburgh Conte Center for the Neuroscience of Mental Disorders Resource Report Resource Website |
University of Pittsburgh Conte Center for the Neuroscience of Mental Disorders (RRID:SCR_000014) | Pitt CCNMD, Conte Center | data or information resource, organization portal, portal | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on August 16,2023. Conte Center for the Neuroscience of Mental Disorders (CCNMD) at the University of Pittsburgh offers a highly interactive scientific environment for the study of the neurobiology of schizophrenia. Integrates the laboratory and clinical research activities of investigators from the University of Pittsburgh Schools of Medicine and Arts and Sciences and the adjacent Carnegie Mellon University. | schizophrenia, gaba |
has parent organization: University of Pittsburgh; Pennsylvania; USA is parent organization of: University of Pittsburgh Brain Tissue Donation Program |
NIMH 5P50MH103204-03 | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_144496 | SCR_000014 | Conte Center for the Neuroscience of Mental Disorders | 2026-08-29 11:29:04 | 0 | ||||||
|
saint Resource Report Resource Website 100+ mentions |
saint (RRID:SCR_024324) | SAINT | software resource, software toolkit | Software package for assigning confidence scores to protein-protein interactions based on quantitative proteomics data in AP-MS experiments. | assigning confidence scores, protein-protein interactions, quantitative proteomics data, AP-MS experiments, | is listed by: Debian | Free, Available for download, Freely available, | OMICS_16243 | https://sources.debian.org/src/saint/ | SCR_024324 | Significance Analysis of INTeractome | 2026-08-29 11:29:11 | 231 | ||||||
|
readucks Resource Report Resource Website |
readucks (RRID:SCR_024315) | software resource, software toolkit | Software package as Nanopore read de-multiplexer. | Nanopore, read de-multiplexer, | is listed by: Debian | Free, Available for download, Freely available, | https://sources.debian.org/src/readucks/ | SCR_024315 | 2026-08-29 11:29:05 | 0 | |||||||||
|
Machine Learning Made Easy Resource Report Resource Website 1+ mentions |
Machine Learning Made Easy (RRID:SCR_024439) | MLme | software resource, software toolkit | Software toolkit for Machine Learning Driven Data Analysis. Simplifies machine learning for data exploration, visualization and analysis. | Machine Learning Driven Data Analysis, | Federal Ministry of Education and Research of Germany ; NIDDK R01 DK127673; Swiss National Science Foundation ; Wings for Life Spinal Cord Research Foundation |
PMID:37461685 | Free, Available for download, Freely available | SCR_024439 | 2026-08-29 11:29:12 | 1 | ||||||||
|
stringi Resource Report Resource Website |
stringi (RRID:SCR_024319) | software resource, software toolkit | Software R package as collection of character string/text/natural language processing tools for pattern searching, random string generation, case mapping, string transliteration, concatenation, sorting, padding, wrapping, Unicode normalisation, date time formatting and parsing. | pattern searching, random string generation, case mapping, string transliteration, concatenation, sorting, padding, wrapping, Unicode normalisation, date time formatting and parsing, | is listed by: Debian | Free, Available for download, Freely available, | https://sources.debian.org/src/r-cran-stringi/ | SCR_024319 | 2026-08-29 11:29:11 | 0 | |||||||||
|
VARNA Resource Report Resource Website 10+ mentions |
VARNA (RRID:SCR_024373) | software resource, software toolkit | Software tool for automated drawing, visualization and annotation of secondary structure of RNA, designed as companion software for web servers and databases.Allows manual modification and structural annotation of resulting drawing using either interactive point and click approach, within web server or through command-line arguments. | Java, secondary structure of RNA drawing, secondary structure of RNA visualization, secondary structure of RNA annotation, | is listed by: Debian | PMID:19398448 | Free, Available for download, Freely available, | OMICS_04455 | https://sources.debian.org/src/varna/ | SCR_024373 | , Visualization Applet for RNA, varna | 2026-08-29 11:29:06 | 12 | ||||||
|
variation graph Resource Report Resource Website |
variation graph (RRID:SCR_024369) | vg | software resource, software toolkit | Software toolkit to improve read mapping by representing genetic variation in reference.Provides succinct encoding of sequences of many genomes. | read mapping, representing genetic variation in reference, encoding of sequences, genome | is listed by: Debian | PMID:30125266 | Free, Available for download, Freely available, | https://sources.debian.org/src/vg/ | SCR_024369 | variationgraph | 2026-08-29 11:29:02 | 0 | ||||||
|
bedr Resource Report Resource Website 1+ mentions |
bedr (RRID:SCR_024526) | software resource, software toolkit | Software R package for genomic interval processing.Genomic regions processing using open-source command line tools to perform genome arithmetic e.g indexing, formatting and merging. | genomic regions processing | Free, Available for download, Freely available | https://CRAN.R-project.org/package=bedr | SCR_024526 | 2026-08-29 11:29:03 | 1 | ||||||||||
|
Trinculo Resource Report Resource Website |
Trinculo (RRID:SCR_024384) | software resource, software toolkit | Software toolkit for carrying out genetic association for multi-catagory phenotypes. Implements multinomial and ordinal association incorporating covariates, conditional analysis, empirical and non-emperical priors and fine-mapping. | carrying out genetic association for multi-catagory phenotypes, incorporating covariates, conditional analysis, mapping | is listed by: Debian | Free, Available for download, Freely available, | https://sources.debian.org/src/trinculo/ | SCR_024384 | trinculo | 2026-08-29 11:29:11 | 0 | ||||||||
|
ROCit Resource Report Resource Website 1+ mentions |
ROCit (RRID:SCR_024420) | software resource, software toolkit | Software R package for assessing overall diagnostic ability of binary classifier. Used to evaluate threshold bound metrics, construct confidence interval of ROC curve and AUC, construct empirical gains table, visualize ROC curve, visualize KS plot, visualize lift plot. | assessing overall diagnostic ability of binary classifier, evaluate threshold bound metrics, construct confidence interval of ROC curve and AUC, construct empirical gains table, visualize ROC curve, visualize KS plot, visualize lift plot, | is listed by: SoftCite | Free, Available for download, Freely available | SCR_024420 | Receiver Operating Characteristic it | 2026-08-29 11:29:12 | 1 | |||||||||
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Luna Resource Report Resource Website 1+ mentions |
Luna (RRID:SCR_024541) | software resource, software toolkit | Software package for analysis of sleep signal data. Open source C/C++ software for manipulating and analyzing polysomnographic recordings, with focus on sleep EEG. | sleep signal data analysis, polysomnographic recordings manipulating and analysis, sleep EEG, | is related to: Moonlight | Free, Available for download, Freely available | SCR_024541 | 2026-08-29 11:29:12 | 8 | ||||||||||
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Rgdal Resource Report Resource Website 1+ mentions |
Rgdal (RRID:SCR_024422) | software resource, software toolkit | Software R package provides bindings for the Geospatial Data Abstraction Library. Translator library for raster and vector geospatial data formats. | Translator library, geospatial data formats, Geospatial Data Abstraction Library bindings, | is listed by: SoftCite | Free, Available for download, Freely available | https://r-forge.r-project.org/projects/rgdal/ | SCR_024422 | , R geospatial data abstraction library, rgdal | 2026-08-29 11:29:03 | 6 | ||||||||
|
rwave Resource Report Resource Website |
rwave (RRID:SCR_024302) | software resource, software toolkit | Software R package provides environment for Time-Frequency analysis of 1-D signals. | Time-Frequency analysis of 1-D signals, | is listed by: Debian | Free, Available for download, Freely available, | https://sources.debian.org/src/r-cran-rwave/ | SCR_024302 | 2026-08-29 11:29:11 | 0 | |||||||||
|
umis Resource Report Resource Website 1+ mentions |
umis (RRID:SCR_024381) | software resource, software toolkit | Software tools for estimating expression in RNA-Seq data which performs sequencing of end tags of transcript, and incorporate molecular tags to correct for amplification bias. | estimating expression in RNA-Seq data, sequencing of end tags of transcript, incorporate molecular tags, correct for amplification bias, | is listed by: Debian | PMID:28263961 | Free, Available for download, Freely available, | OMICS_12783 | https://sources.debian.org/src/umis/ | SCR_024381 | 2026-08-29 11:29:02 | 3 | |||||||
|
survivalROC Resource Report Resource Website 10+ mentions |
survivalROC (RRID:SCR_024415) | software resource, software toolkit | Software R package to compute time dependent Receiver Operating Characteristic curve from censored survival data. | compute time dependent Receiver Operating Characteristic curve, censored survival data, | is listed by: SoftCite | Free, Available for download, Freely available | SCR_024415 | survival Receiver Operating Characteristic | 2026-08-29 11:29:03 | 23 | |||||||||
|
sra-toolkit Resource Report Resource Website 100+ mentions |
sra-toolkit (RRID:SCR_024350) | software resource, software toolkit | Software collection of tools and libraries for using data in the INSDC Sequence Read Archives.Used for long term storage of the next-generation sequence traces. | using data in the INSDC Sequence Read Archives, long term storage of the next-generation sequence traces, | is listed by: Debian | PMID:19906712 | Free, Available for download, Freely available, | OMICS_03771 | https://sources.debian.org/src/sra-toolkit/ | SCR_024350 | NCBI SRA Toolkit | 2026-08-29 11:29:05 | 271 | ||||||
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sumaclust Resource Report Resource Website 1+ mentions |
sumaclust (RRID:SCR_024352) | software library, software resource, software toolkit | Software tool aims to cluster sequences in a way that is fast and exact at the same time. | cluster sequences, fast and exact clustering, | is listed by: Debian | Free, Available for download, Freely available, | OMICS_19112 | https://sources.debian.org/src/sumaclust/ | SCR_024352 | 2026-08-29 11:29:11 | 2 |
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The NIDDK Information Network (dkNET) serves the needs of basic and clinical investigators by providing seamless access to large pools of data and research resources relevant to the mission of The National Institute of Diabetes Digestive and Kidney Diseases (NIDDK). dkNET is hosted at University of California San Diego, and is supported by NIH NIDDK grant U24DK097771.
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