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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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robustrankaggreg Resource Report Resource Website 1+ mentions |
robustrankaggreg (RRID:SCR_024299) | RRA | software resource, software toolkit | Software R package for aggregating ranked lists, especially lists of genes. RRA method uses a probabilistic model for aggregation that is robust to noise and also facilitates the calculation of significance probabilities for all the elements in the final ranking. | aggregating ranked lists, lists of genes aggregation, | is listed by: Debian | Free, Available for download, Freely available, | https://sources.debian.org/src/r-cran-robustrankaggreg/ | SCR_024299 | Robust Rank Aggregation | 2026-08-29 11:29:11 | 4 | |||||||
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rncl Resource Report Resource Website |
rncl (RRID:SCR_024290) | software resource, software toolkit | Software R package provides interface to Nexus Class Library which allows parsing of NEXUS, Newick and other phylogenetic tree file formats. Provides elements of file that can be used to build phylogenetic objects such as ape's 'phylo' or phylobase's 'phylo4(d)'. | interface to Nexus Class Library, parsing of NEXUS, parsing of Newick, parsing phylogenetic tree file formats, | is listed by: Debian | Free, Available for download, Freely available, | https://sources.debian.org/src/r-cran-rncl/ | SCR_024290 | 2026-08-29 11:29:05 | 0 | |||||||||
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hms Resource Report Resource Website |
hms (RRID:SCR_024294) | software resource, software toolkit | Software R package implements S3 class for storing and formatting time-of-day values, based on the 'difftime' class. | storing and formatting time-of-day values, | is listed by: Debian | Free, Available for download, Freely available, | https://sources.debian.org/src/r-cran-hms/ | SCR_024294 | 2026-08-29 11:29:05 | 0 | |||||||||
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Thermo Scientific Maps Software Resource Report Resource Website 1+ mentions |
Thermo Scientific Maps Software (RRID:SCR_024446) | software resource, software toolkit | Correlative electron microscopy and cross-platform imaging automation software. Imaging and correlative workflow software suite compatible with full line of Thermo Scientific SEM, DualBeam (FIB SEM) and TEM platforms. | Correlative electron microscopy, cross-platform imaging automation, imaging and correlative workflow, | Restricted | SCR_024446 | Maps Software | 2026-08-29 11:29:12 | 5 | ||||||||||
|
sambamba Resource Report Resource Website 50+ mentions |
sambamba (RRID:SCR_024328) | software resource, software toolkit | Software tools for working with SAM/BAM data | working with SAM/BAM data, | is listed by: Debian | PMID:25697820 | Free, Available for download, Freely available, | OMICS_07586 | https://sources.debian.org/src/sambamba/ | SCR_024328 | 2026-08-29 11:29:11 | 59 | |||||||
|
seq-seq-pan Resource Report Resource Website |
seq-seq-pan (RRID:SCR_024343) | software resource, software toolkit | Software workflow for SEQuential alignment of SEQuences to build PAN-genome data structure and whole-genome-alignment. | SEQuential alignment, SEQuences, build PAN-genome data structure, | is listed by: Debian | PMID:29334898 | Free, Available for download, Freely available, | https://sources.debian.org/src/seq-seq-pan/ | SCR_024343 | 2026-08-29 11:29:11 | 0 | ||||||||
|
SIMA Resource Report Resource Website 1+ mentions |
SIMA (RRID:SCR_024466) | software resource, software toolkit | Software Python package for analysis of dynamic fluorescence microscopy data. | fluorescence microscopy data, microscopy data analysis, | Free, Available for download, Freely available | SCR_024466 | 2026-08-29 11:29:03 | 2 | |||||||||||
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Cartopy Resource Report Resource Website 1+ mentions |
Cartopy (RRID:SCR_024587) | software library, software resource, software toolkit | Software Python package designed for geospatial data processing in order to produce maps and other geospatial data analyses. Cartographic library with matplotlib support. | geospatial data processing, produce maps production, geospatial data analyses, | Free, Available for download, Freely available | https://scitools.org.uk/cartopy/docs/latest/ | SCR_024587 | 2026-08-29 11:29:12 | 9 | ||||||||||
|
bayesplot Resource Report Resource Website 1+ mentions |
bayesplot (RRID:SCR_024588) | software library, software resource, software toolkit | Software R package providing extensive library of plotting functions for use after fitting Bayesian models.Plotting functions for posterior analysis, MCMC diagnostics, prior and posterior predictive checks, and other visualizations to support the applied Bayesian workflow. | Plotting for Bayesian Models, plotting functions, posterior analysis, MCMC diagnostics, prior and posterior predictive checks, | Free, Available for download, Freely available | https://github.com/stan-dev/bayesplot/, https://CRAN.R-project.org/package=bayesplot | SCR_024588 | 2026-08-29 11:29:03 | 3 | ||||||||||
|
microbiome Resource Report Resource Website 10+ mentions |
microbiome (RRID:SCR_024699) | software resource, software toolkit | Software R package for use in microbiome analysis. Used to provide comprehensive collection of tools and tutorials, with particular focus on amplicon sequencing data. | amplicon sequencing data, microbiome analysis, | is listed by: Bioconductor | Free, Available for download, Freely available | https://microbiome.github.io/tutorials/, https://github.com/microbiome/microbiome/, | SCR_024699 | 2026-08-29 11:29:07 | 22 | |||||||||
|
scCustomize Resource Report Resource Website 100+ mentions |
scCustomize (RRID:SCR_024675) | software resource, software toolkit | Software R package for custom visualizations and functions for streamlined analyses of single cell sequencing. | custom visualizations, single cell sequencing, single cell sequencing analysis, | is listed by: CRAN | Free, Available for download, Freely available | https://CRAN.R-project.org/package=scCustomize, https://github.com/samuel-marsh/scCustomize, https://doi.org/10.5281/zenodo.5706430 | SCR_024675 | 2026-08-29 11:29:13 | 100 | |||||||||
|
readseq Resource Report Resource Website 1+ mentions |
readseq (RRID:SCR_024313) | software resource, software toolkit | Software package as Java based common sequence file format reader and sequence file manipulation. | Java, common sequence file format reader, sequence file manipulation, | is listed by: Debian | Free, Available for download, Freely available, | https://sources.debian.org/src/rdp-readseq/ | SCR_024313 | 2026-08-29 11:29:02 | 6 | |||||||||
|
rsvd Resource Report Resource Website |
rsvd (RRID:SCR_024303) | software resource, software toolkit | Software R package used to compute near optimal low-rank singular value decomposition of massive data sets with high accuracy. Provides several randomized matrix algorithms such as randomized singular value decomposition (rsvd), randomized principal component analysis (rpca), randomized robust principal component analysis (rrpca), randomized interpolative decomposition (rid), and the randomized CUR decomposition (rcur). In addition several plot functions are provided. | randomized singular value decomposition, singular value decomposition, compute optimal low-rank singular value decomposition, massive data sets, | is listed by: Debian | DOI:10.18637/jss.v089.i11 | Free, Available for download, Freely available, | https://sources.debian.org/src/r-cran-rsvd/ | SCR_024303 | randomized singular value decomposition | 2026-08-29 11:29:02 | 0 | |||||||
|
riskRegression Resource Report Resource Website 10+ mentions |
riskRegression (RRID:SCR_024424) | software resource, software toolkit | Software R package provides risk regression models and prediction scores for survival analysis with competing risks. | risk prediction, risk regression models, prediction scores, survival analysis, competing risks, | is listed by: SoftCite | Free, Available for download, Freely available | https://github.com/tagteam/riskRegression | SCR_024424 | 2026-08-29 11:29:06 | 15 | |||||||||
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surveillance Resource Report Resource Website |
surveillance (RRID:SCR_024304) | software resource, software toolkit | Software R package for modeling and monitoring of time series of counts, proportions and categorical data, as well as for modeling of continuous-time point processes of epidemic phenomena. | modeling and monitoring of time series of counts, proportions and categorical data, modeling of continuous-time point processes, | is listed by: Debian | DOI:10.1007/s00180-007-0074-8 | Free, Available for download, Freely available, | https://sources.debian.org/src/r-cran-surveillance/ | SCR_024304 | 2026-08-29 11:29:11 | 0 | ||||||||
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Midwest Transplant Network Resource Report Resource Website |
Midwest Transplant Network (RRID:SCR_000018) | MTN | biomaterial supply resource, material resource, nonprofit organization, tissue bank | An organization that specifically operates in Kansas and the the western half of Missouri, and provides help with connecting the community to organ and tissue procurement, as well as generates general public awareness. This organization is a federally certified non-profit Organ Procurement Organization (OPO) that is meant to help in several facets of transplant and procurement services. | organ procurement, transplant, tissue procurement, public awareness, kansa, western missouri | is listed by: One Mind Biospecimen Bank Listing | nlx_87553 | SCR_000018 | 2026-08-29 11:29:13 | 0 | |||||||||
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tsne Resource Report Resource Website 1+ mentions |
tsne (RRID:SCR_024305) | software resource, software toolkit | Softare R package as implementation of the t-SNE algorithm. | t-SNE algorithm implementation, R | is listed by: Debian | Free, Available for download, Freely available, | https://sources.debian.org/src/r-cran-tsne/ | SCR_024305 | 2026-08-29 11:29:05 | 6 | |||||||||
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RapGreen Resource Report Resource Website 1+ mentions |
RapGreen (RRID:SCR_024426) | PMID:34568824 | software resource, software toolkit | Software phylogenetic tree analysis package. Phylogenetic tree management, exploration and display package. | Phylogenetic tree management, phylogenetic tree analysis, | is listed by: SoftCite | Free, Available for download, Freely available | https://github.com/SouthGreenPlatform/rap-green/wiki, http://southgreenplatform.github.io/rap-green/ | SCR_024426 | 2026-08-29 11:29:12 | 1 | ||||||||
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rotl Resource Report Resource Website |
rotl (RRID:SCR_024306) | software resource, software toolkit | Software R package provides interface to the 'Open Tree of Life' API to retrieve phylogenetic trees, information about studies used to assemble the synthetic tree, and utilities to match taxonomic names to 'Open Tree identifiers'. The 'Open Tree of Life' aims at assembling comprehensive phylogenetic tree for all named species. | interface to 'Open Tree of Life' API, retrieve phylogenetic trees, retrieve information about studies used to assemble synthetic tree, retrieve utilities to match taxonomic names, | is listed by: Debian | Free, Available for download, Freely available, | OMICS_28401 | https://sources.debian.org/src/r-cran-rotl/ | SCR_024306 | 2026-08-29 11:29:02 | 0 | ||||||||
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snowfall Resource Report Resource Website |
snowfall (RRID:SCR_024309) | software resource, software toolkit | Software R package usability wrapper around snow for easier development of parallel R programs. This package offers e.g. extended error checks, and additional functions. All functions work in sequential mode if no cluster is present or wished. Package is also designed as connector to the cluster management tool sfCluster, but can also used without it. | usability wrapper around snow, development of parallel R programs, extended error checks, | is listed by: Debian | Free, Available for download, Freely available, | https://sources.debian.org/src/r-cran-snowfall/ | SCR_024309 | 2026-08-29 11:29:11 | 0 |
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