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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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SPIKE Resource Report Resource Website 100+ mentions |
SPIKE (RRID:SCR_010466) | SPIKE | data or information resource, database, service resource | Database of curated human signaling pathways with an associated interactive software tool for analysis and dynamic visualization of pathways. Individual pathway maps can be viewed and downloaded; the entire database may be browsed, or launched via a map viewer tool that allows dynamic visualization of the database and save networks in XGMML format that can be viewed in all generic XGMML viewers. Map Topics * Cell cycle progress and check points * DNA damage response * Programmed cell death related processes * Stress-activated transcription factors * Mitogen-activated protein kinase pathways * Immune response signaling * HEarSpike: hearing related pathways | visualization, analysis, cellular, signaling pathway, regulatory network, function, genomic, proteomic, cell cycle, dna damage, cell death, stress, transcription factor, mitogen, protein kinase, pathway, immune response, signaling, hearing, dna damage response, programmed cell death, development, ear, bio.tools, FASEB list |
is listed by: bio.tools is listed by: Debian is related to: ConsensusPathDB has parent organization: Tel Aviv University; Ramat Aviv; Israel |
Cancer | A-T Children's Project ; Wolfson Foundation ; European Union FP7 ; Israel Science Foundation |
PMID:21097778 PMID:18289391 |
biotools:spike, nlx_157705 | https://bio.tools/spike | SCR_010466 | SciCrunch Registry | Signaling Pathway Integrated Knowledge Engine | 2026-10-17 01:34:07 | 131 | ||||
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COVIBD Resource Report Resource Website |
COVIBD (RRID:SCR_009155) | software application, software resource | Software application that refines linkage analysis of affected sibpairs by considering attributes or environmental exposures thought to affect disease liability. This refinement utilizes a mixture model in which a disease mutation segregates in only a fraction of the sibships, with the rest of the sibships unlinked. Covariate information is used to predict membership within the two groups corresponding to the linked and unlinked sibships. The pre-clustering model uses covariate information to first form two probabilistic clusters and then tests for excess IBD-sharing in the clusters. The Cov-IBD model determines probabilistic group membership by joint consideration of covariate and IBD values. (entry from Genetic Analysis Software) | gene, genetic, genomic, r | is listed by: Genetic Analysis Software | nlx_154207, SCR_009109, nlx_154275 | SCR_009155 | SciCrunch Registry | R/COVIBD | 2026-10-17 01:34:52 | 0 | |||||||||
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METLIN Resource Report Resource Website 1000+ mentions |
METLIN (RRID:SCR_010500) | METLIN | data or information resource, database | A public repository of metabolite information as well as tandem mass spectrometry data is provided to facilitate metabolomics experiments. It contains structures and represents a data management system designed to assist in a broad array of metabolite research and metabolite identification. An annotated list of known metabolites and their mass, chemical formula, and structure are available. Each metabolite is linked to outside resources for further reference and inquiry. MS/MS data is also available on many of the metabolites. | metabolite, tandem, mass spectrometry, metabolomics, mass, chemical formula, structure, FASEB list |
is listed by: NIDDK Information Network (dkNET) is related to: KEGG has parent organization: Scripps Research Institute |
PMID:16404815 | nlx_158116, r3d100012311 | SCR_010500 | SciCrunch Registry | Metabolite and Tandem MS Database (METLIN), METLIN Metabolite Database, Metabolite and Tandem MS Database | 2026-10-17 01:34:54 | 2825 | |||||||
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Atlasing of the basal ganglia Resource Report Resource Website 1+ mentions |
Atlasing of the basal ganglia (RRID:SCR_009431) | Atlasing of the basal ganglia | atlas, data or information resource | This atlas takes advantage of ultra-high resolution 7T MRI to provide unprecedented levels of detail on structures of the basal ganglia in-vivo. The atlas includes probability maps of the Subthalamic Nucleus (STh) using T2*-imaging. For now it has been created on 13 young healthy participants with a mean age of 24.38 (range: 22-28, SD: 2.36). We recently also created atlas STh probability maps from 8 middle-aged participants with a mean age of 50.67 (range: 40-59, SD: 6.63), and 9 elderly participants with a mean age of 72.33 (range: 67-77, SD: 2.87). You can find more details about the creation of these maps in the following papers: Young: http://www.ncbi.nlm.nih.gov/pubmed/22227131 Middle-aged & Elderly: http://www.ncbi.nlm.nih.gov/pubmed/23486960 Participating institutions are the Max Planck Institute for Human Cognitive and Brain Sciences, Leipzig, Germany, and the Cognitive Science Center Amsterdam, University of Amsterdam, the Netherlands. | magnetic resonance, mri, late adult human, early adult human, middle adult human, basal ganglia |
is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) is related to: LEAD-DBS |
Aging | PMID:22227131 PMID:23486960 |
Creative Commons License | nlx_155581 | SCR_009431 | SciCrunch Registry | 2026-10-17 01:34:05 | 6 | ||||||
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CPSS Resource Report Resource Website 10+ mentions |
CPSS (RRID:SCR_009395) | CPSS | analysis service resource, data analysis service, production service resource, service resource | Computational Platform for analysis of Small RNA deep Sequencing data BioStaCs group., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025. | is listed by: OMICtools | PMID:22576177 | THIS RESOURCE IS NO LONGER IN SERVICE | OMICS_00355 | SCR_009395 | SciCrunch Registry | 2026-10-17 01:33:28 | 23 | ||||||||
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AIMS Data Centre Resource Report Resource Website 10+ mentions |
AIMS Data Centre (RRID:SCR_010475) | AIMS Data Centre | data or information resource, database | Data catalogue, gathered by the Australian Institute of Marine Science (AIMS), a tropical marine research center, on marine science topics including reef weather, sea temperature, cyclones, and water quality. | marine science, reef, marine, australia | is listed by: re3data.org | Creative Commons Attribution License, v3 Australia, Access to some data will be via legal data agreement. | nlx_157748, r3d100010933 | SCR_010475 | SciCrunch Registry | AIMS Data Catalogue, Australian Institute of Marine Science Data Centre, AIMS Data Center | 2026-10-17 01:33:29 | 10 | |||||||
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ALADDIN Resource Report Resource Website 50+ mentions |
ALADDIN (RRID:SCR_010476) | ALADDIN | data or information resource, database | Numerical database of atomic and molecular processes and particle-surface interactions. It has formatted data on atomic structure and spectra (energy levels,wave lengths, and transition probabilities); electron and heavy particle collisions with atoms, ions, and molecules (cross sections and/or rate coefficients, including, in most cases, analytic fit to the data); sputtering of surfaces by impact of main plasma constituents and self sputtering; particle reflection from surfaces; thermophysical and thermomechanical properties of beryllium and pyrolytic graphites. | atomic, molecular, collision, radiative, process, structure, particle-solid surface interaction, physico-chemical, thermo-mechanical, material, fusion energy, plasma, FASEB list | is listed by: re3data.org | nlx_157749, r3d100010726 | SCR_010476 | SciCrunch Registry | ALADDIN Database, ALADDIN Numerical Database, ALADDIN (A Labelled Atomic Data INterface) | 2026-10-17 01:34:07 | 89 | ||||||||
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bNAber Resource Report Resource Website 1+ mentions |
bNAber (RRID:SCR_010510) | bNAber | data or information resource, database | bNAber is the Broadly Neutralizing Antibody E-Resource Database, analysis, visualization, and data discovery tool for broadly neutralizing HIV-1 antibodies (bNAbs). bNAber seeks to be a vital tool in the search for an AIDS vaccine. | sanford burnham medical research institute, hiv, aids | is related to: CHAVI-ID | HIV, AIDS | NIAID UM1AI100663; NIGMS R01GM101457 |
nlx_158732 | SCR_010510 | SciCrunch Registry | 2026-10-17 01:34:07 | 7 | |||||||
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Science in the Open Resource Report Resource Website |
Science in the Open (RRID:SCR_010511) | blog, data or information resource, narrative resource | Science in the Open: This blog contains the thoughts of Cameron Neylon on the technical and social issues involved with ''Open Research''. Most people would agree Open Research includes freely accessible literature or perhaps making raw data available. Others might think it also involves people working on collaborative documents such as Wikis or the freedom to re-use the published literature or data. At its logical extreme Open Research includes making all the details of what we do freely available as it happens. Many people find this scarey. Some, perhaps a growing number, find it tremendously exciting. | nlx_83437 | SCR_010511 | SciCrunch Registry | 2026-10-17 01:33:29 | 0 | ||||||||||||
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HOL Resource Report Resource Website 10+ mentions |
HOL (RRID:SCR_010237) | HOL | data or information resource, database | An online database mainly about the order Hymenoptera. It contains some 115,000 species and literally millions of specimens in collections around the world. Some parts of this database have extensive information available (e.g., Proctotrupoidea, Platygastroidea, Ceraphronoidea, Apoidea), even to the level of specimens (see Platygastridae, Pelecinidae, Monomachidae, Stephanidae). These data have been gathered with the collaboration of a number of colleagues. Other taxa still need work. Hymenoptera Online (HOL) is no longer solely dedicated to Hymenoptera as recent acquisitions have expanded the taxonomic scope of this resource to include Hemiptera, Coleoptera, Mites, Fishes, and others with the help of a number of tireless collaborators. If you would like to contribute to the further development and enhancement of this resource or need technical assistance related to Hymenoptera Online services, please contact HOL Help, Norman F. Johnson, or the HOL Google+ Page. Search for taxa, collections, authors, collectors and specimens by typing your simple query in the text box below. Taxon name searches are case-sensitive and a wildcard (%) will automatically be appended to the end of your query (e.g. Telenomus); the same applies to collectors and authors (e.g. Johnson), collections (e.g. CNC), places (e.g. Bahia), journals (e.g. Memoirs), and specimen searches by specimen ID (e.g. ANIC DB 32). | has parent organization: Ohio State University; Ohio; USA | nlx_156856 | https://mbd-db.osu.edu/hol/taxon_name/323e0d14-2fa1-4b42-98cf-f4f422668e24?filters%5Bfilter_options%5D%5B%5D=56410721-bba5-4281-90fd-d273d4dd281e | SCR_010237 | SciCrunch Registry | Hymenoptera Online (HOL) | 2026-10-17 01:33:29 | 23 | ||||||||
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Access to Archival Databases Resource Report Resource Website |
Access to Archival Databases (RRID:SCR_010479) | AAD | data or information resource, database | Database of the U.S. National Archives and Records Administration that allows users to search by keyword or category. Specific topics in personal history, private sectors, places, wars or time periods can be chosen to help filter your research findings of the 85 million electronic records that have been made available. | political activists, social history, government information | is listed by: re3data.org | nlx_157752, r3d100000002 | SCR_010479 | SciCrunch Registry | Access to Archival Databases (AAD) | 2026-10-17 01:34:54 | 0 | ||||||||
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CARP Resource Report Resource Website 50+ mentions |
CARP (RRID:SCR_009021) | carp | analysis service resource, data analysis service, production service resource, service resource | Service that generates Ramachandran-like plots of carbohydrate linkage torsions in pdb-files. The Ramachandran Plot, where backbone torsion angles are plotted against each other, is a frequently used tool to evaluate the quality of a protein 3D structure. For carbohydrate structures, linkage torsions can be evaluated in a similar way. Preferred Phi/Psi values of the torsion angles of glycosidic bonds depend strongly on the types of monosaccharides involved in the linkage, the kind of linkage (1-3, 1-4, etc) as well as the degree of branching of the structure. CARP analyses carbohydrate data given in PDB files using the pdb2linucs algorithm. For each different linkage type a separate plot is generated. The user can choose between two sources for plot background information for comparison: data obtained from PDB provided by GlyTorsion or from GlycoMapsDB. GlycoMapsDB provides calculated conformational maps, which show energetically preferred regions for a specific linkage, while PDB data are based on experimentally solved structures. For seldom occuring linkages, however, PDB data are often rare, so maybe not sufficient background information for comparison will be available from this source., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025. | carbohydrate, 3d structure, protein, plot |
is related to: Research Collaboratory for Structural Bioinformatics Protein Data Bank (RCSB PDB) is related to: GlyTorsion is related to: GlycoMapsDB is related to: pdb2linucs has parent organization: glycosciences.de |
DFG | PMID:15608187 | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_152878 | SCR_009021 | SciCrunch Registry | CArbohydrate Ramachandran Plot, carp: CArbohydrate Ramachandran Plot | 2026-10-17 01:34:52 | 65 | |||||
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LIBSVM Resource Report Resource Website 1000+ mentions |
LIBSVM (RRID:SCR_010243) | software application, software resource | An integrated software for support vector classification, (C-SVC, nu-SVC), regression (epsilon-SVR, nu-SVR) and distribution estimation (one-class SVM) from the laboratory of Chih-Chung Chang and Chih-Jen Lin. It supports multi-class classification. | software repository, vector classification, regression, distribution estimation |
is used by: Functional Real-time Interactive Endogenous Neuromodulation and Decoding (FRIEND) has parent organization: National Taiwan University; Taipei; Taiwan |
nlx_156876, nlx_157763, SCR_003614 | SCR_010243 | SciCrunch Registry | LIBSVM -- A Library for Support Vector Machines, Library for Support Vector Machines | 2026-10-17 01:34:06 | 1231 | |||||||||
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Rare Breeds Gene Bank Resource Report Resource Website |
Rare Breeds Gene Bank (RRID:SCR_010728) | biomaterial supply resource, material resource, tissue bank | Not yet vetted by NIF curator | nlx_92805 | SCR_010728 | SciCrunch Registry | 2026-10-17 01:33:31 | 0 | ||||||||||||
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TarBase Resource Report Resource Website 500+ mentions |
TarBase (RRID:SCR_010841) | DIANA-TarBase | data or information resource, database, service resource | Manually curated database of experimentally supported animal microRNA targets. Collection of experimentally supported miRNA gene interactions. | mirna-gene interaction |
is listed by: OMICtools is provided by: DIANA Tools |
Fondation Santé Grant ; General Secretariat of Research and Technology ; Greece Grant ; Hellenic Foundation for Research and Innovation ; IKY Foundation |
PMID:22135297 PMID:29156006 |
Restricted | OMICS_00397 | http://carolina.imis.athena-innovation.gr/diana_tools/web/index.php?r=tarbasev8%2Findex/ | SCR_010841 | SciCrunch Registry | DIANA-TarBase v7.0, DIANA-TarBase v.8, DIANA-TarBase v.6 | 2026-10-17 01:33:31 | 869 | ||||
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Wesley Research Institute Tissue Bank Resource Report Resource Website |
Wesley Research Institute Tissue Bank (RRID:SCR_010567) | biomaterial supply resource, material resource, tissue bank | Not yet vetted by NIF curator | nlx_40371 | SCR_010567 | SciCrunch Registry | 2026-10-17 01:34:09 | 0 | ||||||||||||
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RTI Biologics Resource Report Resource Website 1+ mentions |
RTI Biologics (RRID:SCR_010721) | RTI | biomaterial supply resource, material resource, tissue bank | Provides sterile biologic implants of human bone and tissues used in spine, sports medicine, orthopedic, dental and other specialty surgeries. | is listed by: One Mind Biospecimen Bank Listing | nlx_97050 | SCR_010721 | SciCrunch Registry | RTI Biologics Inc, RTI Biologics Inc. | 2026-10-17 01:34:12 | 1 | |||||||||
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Alpha Genesis Resource Report Resource Website 50+ mentions |
Alpha Genesis (RRID:SCR_010568) | AGI | biomaterial supply resource, material resource, tissue bank | A company which provides nonhuman primate products and bio-research services for the global scientific community. They provide serum, plasma, whole blood, and tissue samples from primates such as the Cynomolgus macaque, the Rhesus macaque, and the African Green. Products based on others species are available upon request. | commercial, supplier, nonhuman primate, macaque, african green | Commercial | nlx_40671 | http://www.alphagenesisinc.com/bioproducts.html | SCR_010568 | SciCrunch Registry | Alpha Genesis Inc, Alpha Genesis Incorporated | 2026-10-17 01:33:29 | 56 | |||||||
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NCI National Products Branch Resource Report Resource Website 100+ mentions |
NCI National Products Branch (RRID:SCR_010603) | biomaterial supply resource, material resource, tissue bank | Not yet vetted by NIF curator | nlx_51144 | SCR_010603 | SciCrunch Registry | 2026-10-17 01:34:09 | 100 | ||||||||||||
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New England Organ Bank - NEOB Resource Report Resource Website |
New England Organ Bank - NEOB (RRID:SCR_010693) | biomaterial supply resource, material resource, tissue bank | A federally designated, non-profit organ procurement organization that coordinates organ and tissue donation in the six New England states and Bermuda. | new england, organ bank, non profit, bermuda, organ procurement, tissue bank | nlx_80598 | http://www.newenglandorganbank.org | SCR_010693 | SciCrunch Registry | 2026-10-17 01:34:11 | 0 |
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The NIDDK Information Network (dkNET) serves the needs of basic and clinical investigators by providing seamless access to large pools of data and research resources relevant to the mission of The National Institute of Diabetes Digestive and Kidney Diseases (NIDDK). dkNET is hosted at University of California San Diego, and is supported by NIH NIDDK grant U24DK097771.
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