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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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POWERMARKER Resource Report Resource Website 500+ mentions |
POWERMARKER (RRID:SCR_009332) | POWERMARKER | software application, software resource | A comprehensive set of statistical methods for genetic marker data analysis, designed especially for SSR/SNP data analysis. PowerMarker builds a powerful user interface around both new and traditional statistical methods for population genetic analysis. See analysis to check out the versatility of PowerMarker. PowerMarker is also a 2D Viewer - which was used intensively for visualizing linkage disequilibria results. (entry from Genetic Analysis Software) | gene, genetic, genomic | is listed by: Genetic Analysis Software | nlx_154544 | SCR_009332 | 2026-09-19 12:58:04 | 639 | |||||||||
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MMDRAWER Resource Report Resource Website |
MMDRAWER (RRID:SCR_009296) | MMDRAWER | software application, software resource | Software application to draw chromosome maps from the output of MAPMAKER/EXP. The output format is a Enhanced Metafile, which can be imported into most Windows-based presentation or document editing programs. (entry from Genetic Analysis Software) | gene, genetic, genomic, delphi, ms-windows | is listed by: Genetic Analysis Software | nlx_154487 | SCR_009296 | 2026-09-19 12:58:03 | 0 | |||||||||
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POINTER Resource Report Resource Website 10+ mentions |
POINTER (RRID:SCR_009330) | POINTER | software application, software resource | Software application for complex segregation analysis with the mixed model (major locus and polygenes). (entry from Genetic Analysis Software) | gene, genetic, genomic, sun fortran, (especially, the command fsplit is needed), unix, sunos | is listed by: Genetic Analysis Software | nlx_154538 | SCR_009330 | 2026-09-19 12:58:04 | 26 | |||||||||
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PHASE Resource Report Resource Website 500+ mentions |
PHASE (RRID:SCR_009327) | PHASE | software application, software resource | Software program that implements a new statistical method for reconstructing haplotypes from population genotype data (entry from Genetic Analysis Software) | gene, genetic, genomic | is listed by: Genetic Analysis Software | nlx_154533 | SCR_009327 | 2026-09-19 12:58:04 | 598 | |||||||||
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PEDCHECK Resource Report Resource Website 50+ mentions |
PEDCHECK (RRID:SCR_009322) | PEDCHECK | software application, software resource | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on May 16,20023. Software application for identifying all Mendelian inconsistencies in pedigree data. (entry from Genetic Analysis Software) | gene, genetic, genomic, c, c++, unix, (sunos/solaris/compaq-alpha/sgi-irix/..) | is listed by: Genetic Analysis Software | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_154516 | SCR_009322 | 2026-09-19 12:58:04 | 75 | ||||||||
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PEDSTATS Resource Report Resource Website 10+ mentions |
PEDSTATS (RRID:SCR_009323) | PEDSTATS | software application, software resource | Software application for error checking and data summary of large or small data sets in QTDT, LINKAGE or MENDEL format. Checks for basic formatting errors, disconnected family groups, ancestor-descendant loops and can detect all Mendelian (including X-linked) inheritance errors in any pedigree without loops. Produces text and graphical (PDF) summaries of the family structure, trait and marker information of pedigree data and can break down summaries by sex, relative pair type or family. PEDSTATS also does Hardy-Weinberg testing using either a fast exact or asymptotic test and can summarize information in text or graphical PDF format. Additional features include a number of options for filtering data prior to summary and checks for inappropriate age or covariate values. Lastly, PEDSTATS can identify and trim uninformative individuals from a pedigree and rewrite the reorganized data to a new pedigree file. (entry from Genetic Analysis Software) | gene, genetic, genomic, c, c++, linux, unix, ms-windows | is listed by: Genetic Analysis Software | nlx_154529 | SCR_009323 | 2026-09-19 12:58:04 | 30 | |||||||||
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RELTYPE Resource Report Resource Website |
RELTYPE (RRID:SCR_009359) | RELTYPE | software application, software resource | Software program for determining biological relatedness between individuals based on allele sharing at microsatellite loci (entry from Genetic Analysis Software) | gene, genetic, genomic | is listed by: Genetic Analysis Software | nlx_154574 | SCR_009359 | 2026-09-19 12:58:05 | 0 | |||||||||
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RELCHECK Resource Report Resource Website 1+ mentions |
RELCHECK (RRID:SCR_009357) | RELCHECK | software application, software resource | Software program for verifying the relationships between all pairs of individuals in a linkage study, by use of (autosomal) genome scan data, with allowance for the presence of genotyping errors. (entry from Genetic Analysis Software) | gene, genetic, genomic, c, ms-dos, ms-windows, unix | is listed by: Genetic Analysis Software | nlx_154572 | SCR_009357 | 2026-09-19 12:58:05 | 1 | |||||||||
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RELPAIR Resource Report Resource Website 10+ mentions |
RELPAIR (RRID:SCR_009358) | RELPAIR | software application, software resource | Software program that infers the relationships of pairs of individuals based on genetic marker data, either within families or across an entire sample. (entry from Genetic Analysis Software) | gene, genetic, genomic, fortran77, ms-windows, (95), unix | is listed by: Genetic Analysis Software | nlx_154573 | SCR_009358 | 2026-09-19 12:58:05 | 15 | |||||||||
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RC-TDT Resource Report Resource Website 1+ mentions |
RC-TDT (RRID:SCR_009353) | RC-TDT | software application, software resource | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on May 16,2023. Software application using a family-based association method that allows testing for linkage in the presence of linkage disequilibrium between an autosomal marker and a disease even if there is only incomplete parental-marker information. Recently, Horvath et al. (2000) described a similar procedure (XRC-TDT) for X-linked markers. The distribution contains SAS macros that calculate the RC-TDT and XRC-TDT test statistics, as well as their respective exact P values. (entry from Genetic Analysis Software) | gene, genetic, genomic, sas macro | is listed by: Genetic Analysis Software | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_154568 | SCR_009353 | Reconstruction-Combined Transmission Disequilibrium Test | 2026-09-19 12:58:05 | 1 | |||||||
|
QTL EXPRESS Resource Report Resource Website 10+ mentions |
QTL EXPRESS (RRID:SCR_009350) | QTL EXPRESS | software application, software resource | A web-based user-friendly package to map Quantitative Trait Loci in outbred populations. Population structures catered for are line crosses, halfsib families, nuclear families and sibpairs. Permutation tests to determine empirical significance levels and bootstrapping to estimate empirical confidence intervals of QTL locations are optional. Fixed effects/covariates can be fitted and models may include single or multiple QTL. Results are presented in tabular and graphical format. (entry from Genetic Analysis Software) | gene, genetic, genomic, java, web-based | is listed by: Genetic Analysis Software | nlx_154565 | SCR_009350 | 2026-09-19 12:58:05 | 13 | |||||||||
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QTL-ALL Resource Report Resource Website 1+ mentions |
QTL-ALL (RRID:SCR_009348) | QTL-ALL | software application, software resource | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on May 16,2023. Software package designed to make as many as possible of the new statistics (e.g. score statistics) widely available. The software consists of a MEGA2-like interface for data analysis preparation and a library of R routines that computes linkage statistics. QTL-ALL reads in input data, creates re-formatted output data files, calls external IBD-generation software such as MERLIN or SIMWALK2, then computes statistics using our R library, and finally produces tables and plots of statistics and p-values. This entire sequence is highly automated, requiring minimal user-intervention. The initial release of the software computes a number of newer QTL-mapping statistics, including several score statistic variants, and can handle nuclear family data, including specialty designs such as discordant and concordant (affected) pairs. (entry from Genetic Analysis Software) | gene, genetic, genomic | is listed by: Genetic Analysis Software | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_154562 | SCR_009348 | QTL Analysis and Linkage Library | 2026-09-19 12:58:05 | 9 | |||||||
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QTL Cartographer Resource Report Resource Website 10+ mentions |
QTL Cartographer (RRID:SCR_009349) | QTL Cartographer | software application, software resource | Software program to map quantitative traits sing a map of molecular markers. (entry from Genetic Analysis Software) | gene, genetic, genomic, unix, ms-windows, macos | is listed by: Genetic Analysis Software | nlx_154564 | SCR_009349 | 2026-09-19 12:58:05 | 17 | |||||||||
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PSEUDOMARKER Resource Report Resource Website 10+ mentions |
PSEUDOMARKER (RRID:SCR_009345) | PSEUDOMARKER | software application, software resource | A linkage analysis software for joint linkage and/or linkage disequilibrium analysis. PSEUDOMARKER can analyze different data structures jointly such as cases-controls, trios, sib-pairs, sib-ships, and extended families. (entry from Genetic Analysis Software) | gene, genetic, genomic, c/c++, linux | is listed by: Genetic Analysis Software | nlx_154557 | SCR_009345 | 2026-09-19 12:58:04 | 14 | |||||||||
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PRT Resource Report Resource Website |
PRT (RRID:SCR_009340) | PRT | software application, software resource | Software application for partition of single generation into sibling groups (entry from Genetic Analysis Software) | gene, genetic, genomic, ms-windows | is listed by: Genetic Analysis Software | nlx_154554 | SCR_009340 | Pedigree Reconstruction Tools | 2026-09-19 12:58:04 | 0 | ||||||||
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PSAT Resource Report Resource Website 10+ mentions |
PSAT (RRID:SCR_009341) | PSAT | software application, software resource | Software application (entry from Genetic Analysis Software) | gene, genetic, genomic | is listed by: Genetic Analysis Software | nlx_154555 | SCR_009341 | Population Stratification Association Test | 2026-09-19 12:58:04 | 29 | ||||||||
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SELSIM Resource Report Resource Website 1+ mentions |
SELSIM (RRID:SCR_009378) | software application, software resource | Software program which can simulate population genetic data in which a single site has experienced natural selection. When designing methods which provide the necessary power to detect regions of the genome which have experience historical selective pressures it is important to consider which patterns of genetic diversity are indicative of particular forms of natural selection. (entry from Genetic Analysis Software) | gene, genetic, genomic, c, c++, ms-windows, (xp), linux | is listed by: Genetic Analysis Software | nlx_154613 | http://www.stats.ox.ac.uk/mathgen/software.html | SCR_009378 | SelSim | 2026-09-19 12:58:05 | 2 | ||||||||
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R/ONEMAP Resource Report Resource Website 10+ mentions |
R/ONEMAP (RRID:SCR_009371) | software application, software resource | Software environment for constructing linkage maps in outcrossing plant species, using full-sib families derived from two outbreed (non-inbreeding) parent plants. (entry from Genetic Analysis Software) | gene, genetic, genomic, r | is listed by: Genetic Analysis Software | nlx_154502, SCR_009312, nlx_154593 | http://www.ciagri.usp.br/~aafgarci/OneMap/ | SCR_009371 | ONEMAP | 2026-09-19 12:58:05 | 22 | ||||||||
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SPAM Resource Report Resource Website 100+ mentions |
SPAM (RRID:SCR_009407) | software application, software resource | Software application that estimates the relative contributions of discrete populations to a mixture sample, solving what is commonly referred to in fisheries as the mixed stock analysis or genetic stock identification problem. (entry from Genetic Analysis Software) | gene, genetic, genomic | is listed by: Genetic Analysis Software | nlx_154654 | SCR_009407 | Statistics Program for Analysing Mixtures | 2026-09-19 12:58:06 | 154 | |||||||||
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SNPTEST Resource Report Resource Website 100+ mentions |
SNPTEST (RRID:SCR_009406) | software application, software resource | Software program for the analysis of single SNP association in genome-wide studies. The tests implemented can cater for binary (case-control) and quantitative phenotypes, can condition upon an arbitrary set of covariates and properly account for the uncertainty in genotypes. The program is designed to work seamlessly with the output of both the genotype calling program CHIAMO, the genotype imputation program IMPUTE and the program GTOOL. This program was used in the analysis of the 7 genome-wide association studies carried out by the Wellcome Trust Case-Control Consortium (WTCCC). (entry from Genetic Analysis Software) | gene, genetic, genomic, bio.tools |
is listed by: Genetic Analysis Software is listed by: bio.tools is listed by: Debian |
nlx_154651, biotools:snptest | https://bio.tools/snptest | http://www.stats.ox.ac.uk/~marchini/software/gwas/snptest.html | SCR_009406 | 2026-09-19 12:58:06 | 401 |
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