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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | ||||||||||||||
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Taiwan Biobank Resource Report Resource Website 10+ mentions |
Taiwan Biobank (RRID:SCR_010557) | biomaterial supply resource, material resource, tissue bank | Taiwan Biobank intends to conduct large-scale cohort studies and case-control studies on local diseases. The cohort study will call for 200,000 volunteers, while the case-control study will invite 100,000 patients with the 10 to 15 most common diseases. These studies will enable Taiwan Biobank to identify the disease-causing factors and mechanisms of common diseases to facilitate the development of better treatment and prevention, reduce the cost of medical treatment and make it possible to achieve the goal of improving the island nation’s health. | nlx_36653 | SCR_010557 | SciCrunch Registry | 2026-10-17 01:34:56 | 22 | ||||||||||||
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http://virginiahughes.com/ Resource Report Resource Website |
http://virginiahughes.com/ (RRID:SCR_010558) | blog, data or information resource, narrative resource | Virginia Hughes'' Research Blog | nlx_37352 | SCR_010558 | SciCrunch Registry | 2026-10-17 01:33:30 | 0 | ||||||||||||
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YeastFunc Resource Report Resource Website |
YeastFunc (RRID:SCR_010561) | YeastFunc | data or information resource, database, image | YeastFunc is a public database for browsing of quantitative S. cerevisiae gene function predictions, gene function linkage predictions, and the evidence behind the predictions, overlayed upon the experimentally verified annotations as taken from the SGD, MGI and Ensembl Gene databases, respectively. Three aspects of gene function predictions are displayed: * First, for a particular gene, users can view all functions ranked by certainty that the corresponding gene-function pair is a true annotation. * Second, for a particular function, users can view all genes ranked by certainty. * The third aspect is functional linkage predictions, displayed alongside the first two aspects as gene-centered and function-centered images, respectively, and editable via Cytoscape. These functional linkage graphs are independently informative, though they are also used as a step in one of the gene function prediction techniques whose certainty scores are displaying on this site, so they can be treated as evidence. Evidence leading to all gene function predictions in the first two aspects as well as all experimentally verified gene function annotation is displayed alongside each of the first two aspects, allowing the user to understand the basis for the certainty score. To get started type a Gene Ontology ID, an SGD ID, an ORF ID, an Ensembl gene id, an Entrez gene id, a Uniprot id, a standard gene name, or a general search term in the text box. The results of your search will appear below the search box. These results are solely Gene Ontology terms and genes for the species that you selected. Click the result that you would like to investigate further. Note the paging toolbar at the bottom of the results list. If you are interested in performing your own analyses upon all prediction scores displayed on this site you may download the file. Of the 15,633,440 scored yeast gene-function pairs, 6,368 genes have scores and 4,877 genes have at least one experimentally verified function. | yeast, saccaromyces cerevisiae, s. cerevisiae | has parent organization: University of Toronto; Ontario; Canada | nlx_38480 | http://func.med.harvard.edu/yeast/ | SCR_010561 | SciCrunch Registry | Yeast Gene Predictive Functional Annotation Browser, FuncBase: Yeast Gene Predictive Functional Annotation Browser | 2026-10-17 01:33:29 | 0 | |||||||
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DaTo Resource Report Resource Website 10+ mentions |
DaTo (RRID:SCR_010280) | DaTo | data or information resource, database | A biological database and software tool catalog based on text mined and human annotated url mentions in PubMed abstracts. Data are annotated as to the author''''s country of origin and url status is checked. | metadata, catalog, text mining |
is related to: Cytoscape is related to: PubMed has parent organization: Zhejiang University; Zhejiang; China |
National Natural Science Foundation of China 30971743; National Natural Science Foundation of China 31371328 |
nlx_157296 | SCR_010280 | SciCrunch Registry | DA&TO - The Atlas of biology databases and tools, DAandTO, Da&To | 2026-10-17 01:34:54 | 12 | |||||||
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Nordic Genetic Resource Centre (Plants) Resource Report Resource Website |
Nordic Genetic Resource Centre (Plants) (RRID:SCR_010529) | biomaterial supply resource, material resource, tissue bank | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on May 18,2023. | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_22485 | SCR_010529 | SciCrunch Registry | 2026-10-17 01:33:29 | 0 | |||||||||||
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CiteAb Resource Report Resource Website 50+ mentions |
CiteAb (RRID:SCR_009653) | CiteAb | data or information resource, database | Citation-ranked antibody search engine that provides a simple way to find antibodies that work. They use the number of citations as a transparent method to rank antibodies. Nobody can pay to be ranked higher. They are always looking for more commercial and academic antibodies to make CiteAb better. There is no charge to list. | antibody, search engine, citation |
is listed by: FORCE11 is related to: PubMed has parent organization: University of Bath; North East Somerset; United Kingdom |
Free, The community can contribute to this resource | nlx_156037 | http://www.force11.org/node/4768 | SCR_009653 | SciCrunch Registry | CiteAb: The Antibody Search Engine | 2026-10-17 01:34:52 | 55 | ||||||
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Project Tycho Resource Report Resource Website 1+ mentions |
Project Tycho (RRID:SCR_010489) | data or information resource, database | Database to advance the availability and use of public health data for science and policy making that includes data from all weekly notifiable disease reports for the United States dating back to 1888. Additional U.S. and international data will be released twice yearly. | population, disease, metadata standard, vaccination, public health data, health, incidence rate, death, statistics | has parent organization: University of Pittsburgh; Pennsylvania; USA | Smallpox, Polio, Measles, Mumps, Rubella, Hepatitis A, Whooping cough, Diphtheria, Etc. | Bill and Melinda Gates Foundation ; NIH |
PMID:24283231 PMID:24611167 |
Account required, Creative Commons Attribution License | nlx_157982, r3d100011948 | SCR_010489 | SciCrunch Registry | Project Tycho Data for Health | 2026-10-17 01:34:07 | 3 | |||||
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Pediatric Imaging Neurocognition and Genetics Resource Report Resource Website 50+ mentions |
Pediatric Imaging Neurocognition and Genetics (RRID:SCR_008953) | PING | data or information resource, database | A large multi-site pediatric MRI and genetics data resource to facilitate studies of the genomic landscape of the developing human brain. It includes information about the developing mental and emotional functions of the children to understand the genetic basis of individual differences in brain structure and connectivity, cognition, and personality. Investigators on the project are studying 1400 children between the ages of 3 and 20 years so that links between genetic variation and developing patterns of brain connectivity can be examined. Investigators interested in the effects of a particular gene will be able to search the database for any brain areas or connections between areas that differ as a function of variation in a particular gene, and also to determine if the genes appear to affect the course of brain development at some point during childhood. A data exploration tool has been created for mapping and analyzing MRI data sets collected for PING and related developmental studies. Approved investigators will be able to view raw image sets and derived 3D brain maps of MRI and DTI data, conduct hypothesis testing, and graph brain area measures as they change across the time course of development. PING Cores * Coordinating Core: Functions include project management, screening of participants and maintaining the database * Neuroimaging Core: applying a standardized high-resolution structural MRI protocol involving 3-D T1-weighted scans, a T2-weighted volume, and a set of diffusion-weighted scans with multiple b values and diffusion directions, scans to estimate MRI relaxation rates, and gradient echo EPI scans for resting state fMRI. Importantly, adaptive motion compensation, using ����??PROMO����??, a novel real-time motion correction algorithm will be used. Specific PING protocols for each scanner manufacturer: ** PING MRI Protocol - GE ** PING MRI Protocol - Philips ** PING MRI Protocol - Siemens * Assessment Core: Cognitive assessments for the PING project are conducted using the NIH Toolbox for Cognition. * Genomics Core: functions as a central repository for receipt of saliva samples collected for each study participant. Once received, samples are catalogued, maintained, and DNA is extracted using state-of-the-field laboratory techniques. Ultimately, genome-wide genotyping is performed on the extracted DNA using the Illumina Human660W-Quad BeadChip. PING involves 10 sites throughout the country including UCSD, University of Hawaii, Scripps Genomics, UCLA, UC Davis, Kennedy Krieger Institute/Johns Hopkins, Sacker Institute/Cornell University, University of Massachusetts, Massachusetts General Hospital/Harvard, and Yale. Families who may want to participate in the study, or others who want to know more about it, may email questions to ping (at) ucsd.edu. | pediatric, neuroimaging, genetics, child, early adult human, adolescent, genetic variant, magnetic resonance imaging, brain, gene, brain structure, connectivity, function, brain development, cognition, experimental protocol, saliva, dna, diffusion tensor imaging, image, genotype, dicom, imaging genomics, magnetic resonance, nifti, FASEB list |
is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) is related to: NIH Toolbox - Assessment of Neurological and Behavioral Function has parent organization: University of California at San Diego; California; USA has parent organization: Multimodal Imaging Laboratory |
NIDA ; ARRA ; NICHD |
Data Use Agreement required. | nlx_151904 | http://www.nitrc.org/projects/ping | http://ping.chd.ucsd.edu/ | SCR_008953 | SciCrunch Registry | PING Study, Pediatric Imaging Neurocognition and Genetics (PING) | 2026-10-17 01:34:51 | 80 | ||||
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Search Orphan Drug Designations and Approvals Resource Report Resource Website 1+ mentions |
Search Orphan Drug Designations and Approvals (RRID:SCR_010256) | data or information resource, database | Database of Orphan Drug Product designations. Searches may be run by entering the product name, orphan designation, and dates. Results can be displayed as a condensed list, detailed list, or an Excel spreadsheet. | has parent organization: U.S. Food and Drug Administration | nlx_156908 | SCR_010256 | SciCrunch Registry | 2026-10-17 01:33:29 | 6 | |||||||||||
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Dangerous Ideas Resource Report Resource Website |
Dangerous Ideas (RRID:SCR_010531) | data or information resource, discussion, narrative resource | THIS RESOURCE IS NO LONGER IN SERVICE This is the website for a weekly social event called Dangerous Ideas, to promote more cross talk and cross pollination of ideas. There is a list of links to interesting new tools and technologies in the realm of computation and science. We'll be experimenting with webcasting this so others who can't physically join us can share in seeing what we think is cool. Its a completely open event-- anyone is welcome to join in, but should be prepared to present! | has parent organization: University of California at San Diego; California; USA | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_22882 | SCR_010531 | SciCrunch Registry | 2026-10-17 01:33:29 | 0 | ||||||||||
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AnimalDrugsatFDA Resource Report Resource Website |
AnimalDrugsatFDA (RRID:SCR_010257) | data or information resource, database | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 23,2022. Database of approved veterinary drugs run by the FDA. | has parent organization: U.S. Food and Drug Administration | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_156909 | SCR_010257 | SciCrunch Registry | animal drugs at FDA, animaldrugs@fda | 2026-10-17 01:34:06 | 0 | |||||||||
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Genetic Alterations in Cancer Resource Report Resource Website |
Genetic Alterations in Cancer (RRID:SCR_010533) | GAC | data or information resource, database | THIS RESOURCE IS NO LONGER IN SERVICE, documented August 22, 2016. The NIEHS Genetic Alterations in Cancer (GAC) knowledgebase is a comprehensive collection of data compiled from studies reported in the published literature on genetic alterations in tumors associated with exposure to specific chemical, physical, or biological agents that can be linked to genes implicated in the development of cancers. GAC provides access to data from peer reviewed journals for hundreds of studies of gene mutations, loss of heterozygosity, and/or chromosome changes in tumors from humans, mice, or rats. Results are summarized in tables and graphic profiles that show the incidence (percent) of tumors with alterations in each gene that has been studied. Detailed data tables display results for each subject studied in the cited reference and the reference ID is hyperlinked to its PubMed abstract for more information. A mutation spectrum for individual genes and links to gene information from The Cancer Genome Anatomy Project and the Rat Genome Database are also provided. | has parent organization: National Institute of Environmental Health Sciences | PMID:16410370 | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_23898 | http://www.niehs.nih.gov/research/resources/databases/gac/index.cfm | SCR_010533 | SciCrunch Registry | 2026-10-17 01:33:29 | 0 | |||||||
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Brains Lab Resource Report Resource Website |
Brains Lab (RRID:SCR_010534) | Brains Lab | blog, data or information resource, narrative resource | I''m studying how the brain works on various levels; this blog chronicles some of my informal notes along the way. I previously went to Vassar College, majoring in Neuroscience and Behavior with a minor in Math. Now I work at a biology lab in Maryland. I appreciate any feedback that you may have, good or bad. You can email me at amckenz at g mail dot com. What I write on here is obviously my opinion. Everything on the site is filed under a Creative Commons License v. 3.0. That means that you can copy and re-publish this stuff anywhere without my permission. Thanks for reading. Essay titles include: * A Loss of Agency Following Use of ADHD Medications in College Aged Adults * An Evolutionary Account of the Environmentally Programmed Stress Response * Changes in protein structure of myelin sheaths throughout vertebrate evolution * Effect of Glucocorticoids on the Attenuation in Neurogenesis due to Sleep Deprivation * Insulin sensitivity and age-related memory changes due to caloric restriction * Is Neurogenesis in the Hippocampus Linked to Depression? * Novelty-Seeking and Associative Learning of Chemotaxis in C. Elegans * The Effects of D2 Receptors on the Inverted U-Shape Response Curve to Psychostimulants * Three Applications of Optogenetics The author has included some tricks and illusions from around the web that reveal fascinating facets of our thought processes including: The Checker, Sensory Homonculus Picture, A Blindspot Demonstration, A Ball in a Box, Iterated Choices, The Max Plank Institute for Biological Cybernetics, The Motion Aftereffect Illusion, The Phi Phenomenon, The Common Fate Phenomenon, A Double Face, The Troxler Effect | brain imaging, brain-computer interface, cognitive psychology, connectomics, developmental neuroscience, evolutionary biology, molecular neuroscience, neurogenesis, neurogenetics, neuropharmacology, neurotransmitter, theoretical neuroscience, trend, neuroscience, vision, synapse, somata, systems neuroscience | has parent organization: WordPress | Aging | nlx_24102 | SCR_010534 | SciCrunch Registry | Brains Lab: Synapses Somata and Systems Neuroscience | 2026-10-17 01:34:08 | 0 | |||||||
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Functional ROI Atlas Resource Report Resource Website |
Functional ROI Atlas (RRID:SCR_009481) | Functional ROI Atlas | atlas, data or information resource | An effort to provide a set of quasi-probabilistic atlases for established functional ROIs in the human neuroimaging literature. Many atlases exist for various anatomical parcellation schemes, such as the Brodmann areas, the structural atlases, tissue segmentation atlases, etc. To date, however, there is no atlas for so-called functional ROIs. Such fROIs are typically associated with an anatomical label of some kind (e.g. the _fusiform_ face area), but these labels are only approximate and can be misleading inasmuch as fROIs are not constrained by anatomical landmarks, whether cytoarchitectonic or based on sulcal and gyral landmarks. The goal of this project is to provide quasi-probabilistic atlases for fROIs that are based on published coordinates in the neuroimaging literature. This is an open-ended enterprise and the atlas can grow as needed. Members of the neuroscience and neuroimaging community interested in contributing to the project are encouraged to do so. | magnetic resonance, nifti, functional roi, region of interest, neuroimaging | is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) | GNU General Public License, The community can contribute to this resource | nlx_155628 | SCR_009481 | SciCrunch Registry | 2026-10-17 01:34:52 | 0 | ||||||||
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Nomenclature for the description of sequence variants Resource Report Resource Website 100+ mentions |
Nomenclature for the description of sequence variants (RRID:SCR_010261) | MUTNOMEN | data or information resource, database | Database of gene mutation nomenclature. | has parent organization: Human Genome Variation Society | PMID:10612815 | nlx_156915 | SCR_010261 | SciCrunch Registry | 2026-10-17 01:33:29 | 460 | |||||||||
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Omixon blog Resource Report Resource Website |
Omixon blog (RRID:SCR_010020) | Omixon blog | blog, data or information resource, narrative resource | We share commentaries, news and announcement that advance our goal of helping clinical labs to adopt next generation sequencing for the analysis of diagnostic gene targets. | is listed by: OMICtools | OMICS_01720 | SCR_010020 | SciCrunch Registry | 2026-10-17 01:34:06 | 0 | ||||||||||
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New York University Specialty Tissue Banks Resource Report Resource Website |
New York University Specialty Tissue Banks (RRID:SCR_010540) | biomaterial supply resource, material resource, tissue bank | THIS RESOURCE IS NO LONGER IN SERVICE, documented August 22, 2016. | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_26476 | http://ci.med.nyu.edu/research/facilities/tissue-acquisition-and-banking-services-tabs/contact-information | SCR_010540 | SciCrunch Registry | 2026-10-17 01:34:55 | 0 | ||||||||||
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Census Microdata Samples Project Resource Report Resource Website |
Census Microdata Samples Project (RRID:SCR_008902) | Census Microdata Samples Project | data or information resource, database | A data set of cross-nationally comparable microdata samples for 15 Economic Commission for Europe (ECE) countries (Bulgaria, Canada, Czech Republic, Estonia, Finland, Hungary, Italy, Latvia, Lithuania, Romania, Russia, Switzerland, Turkey, UK, USA) based on the 1990 national population and housing censuses in countries of Europe and North America to study the social and economic conditions of older persons. These samples have been designed to allow research on a wide range of issues related to aging, as well as on other social phenomena. A common set of nomenclatures and classifications, derived on the basis of a study of census data comparability in Europe and North America, was adopted as a standard for recoding. This series was formerly called Dynamics of Population Aging in ECE Countries. The recommendations regarding the design and size of the samples drawn from the 1990 round of censuses envisaged: (1) drawing individual-based samples of about one million persons; (2) progressive oversampling with age in order to ensure sufficient representation of various categories of older people; and (3) retaining information on all persons co-residing in the sampled individual''''s dwelling unit. Estonia, Latvia and Lithuania provided the entire population over age 50, while Finland sampled it with progressive over-sampling. Canada, Italy, Russia, Turkey, UK, and the US provided samples that had not been drawn specially for this project, and cover the entire population without over-sampling. Given its wide user base, the US 1990 PUMS was not recoded. Instead, PAU offers mapping modules, which recode the PUMS variables into the project''''s classifications, nomenclatures, and coding schemes. Because of the high sampling density, these data cover various small groups of older people; contain as much geographic detail as possible under each country''''s confidentiality requirements; include more extensive information on housing conditions than many other data sources; and provide information for a number of countries whose data were not accessible until recently. Data Availability: Eight of the fifteen participating countries have signed the standard data release agreement making their data available through NACDA/ICPSR (see links below). Hungary and Switzerland require a clearance to be obtained from their national statistical offices for the use of microdata, however the documents signed between the PAU and these countries include clauses stipulating that, in general, all scholars interested in social research will be granted access. Russia requested that certain provisions for archiving the microdata samples be removed from its data release arrangement. The PAU has an agreement with several British scholars to facilitate access to the 1991 UK data through collaborative arrangements. Statistics Canada and the Italian Institute of statistics (ISTAT) provide access to data from Canada and Italy, respectively. * Dates of Study: 1989-1992 * Study Features: International, Minority Oversamples * Sample Size: Approx. 1 million/country Links: * Bulgaria (1992), http://www.icpsr.umich.edu/icpsrweb/ICPSR/studies/02200 * Czech Republic (1991), http://www.icpsr.umich.edu/icpsrweb/ICPSR/studies/06857 * Estonia (1989), http://www.icpsr.umich.edu/icpsrweb/ICPSR/studies/06780 * Finland (1990), http://www.icpsr.umich.edu/icpsrweb/ICPSR/studies/06797 * Romania (1992), http://www.icpsr.umich.edu/icpsrweb/ICPSR/studies/06900 * Latvia (1989), http://www.icpsr.umich.edu/icpsrweb/ICPSR/studies/02572 * Lithuania (1989), http://www.icpsr.umich.edu/icpsrweb/ICPSR/studies/03952 * Turkey (1990), http://www.icpsr.umich.edu/icpsrweb/ICPSR/studies/03292 * U.S. (1990), http://www.icpsr.umich.edu/icpsrweb/ICPSR/studies/06219 | housing condition, international, minority, population, census, census data, social, economic, middle adult human, late adult human, social science, behavioral science, housing census, social condition, economic condition |
is listed by: Inter-university Consortium for Political and Social Research (ICPSR) is related to: National Archive of Computerized Data on Aging (NACDA) |
Aging, Social phenomena | United Nations Population Fund ; NIA ; United Nations Economic Commission for Europe |
Variable | nlx_151430 | SCR_008902 | SciCrunch Registry | Status of Older Persons in UNECE Countries, Dynamics of Population Aging in ECE Countries, PAU Census Microdata Samples Project, Population Activities Unit Census Microdata Samples Project, Dynamics of Population Aging in Economic Commission for Europe Countries | 2026-10-17 01:33:28 | 0 | |||||
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PhenoExplorer Resource Report Resource Website |
PhenoExplorer (RRID:SCR_008980) | PhenoExplorer | analysis service resource, data analysis service, production service resource, service resource | A tool for finding dbGaP studies containing phenotype variables of interest. Lack of standardization makes locating and categorizing previously measured variables difficult. This query tool for biomedical researchers is to identify studies and phenotype variables of interest. | phenotype |
is related to: NCBI database of Genotypes and Phenotypes (dbGap) has parent organization: University of Southern California; Los Angeles; USA has parent organization: University of North Carolina at Chapel Hill; North Carolina; USA |
NHLBI 1UH2HL108780 | Public, Registration required | nlx_152227 | SCR_008980 | SciCrunch Registry | 2026-10-17 01:34:51 | 0 | |||||||
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NetAge Database Resource Report Resource Website 1+ mentions |
NetAge Database (RRID:SCR_010224) | NetAge | data or information resource, database | Database that contains gene sets and microRNA-regulated protein-protein interaction networks for longevity, age-related diseases and aging-associated processes. | longevity, protein-protein interaction, mirna-regulated protein-protein interaction network, gene, protein, mirna, biogerontology | has parent organization: Ben-Gurion University of the Negev; Beer-Sheva; Israel | Age-related disease, Aging | PMID:20186480 | Acknowledgement requested, Public | nlx_156769 | SCR_010224 | SciCrunch Registry | 2026-10-17 01:34:06 | 6 |
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