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https://sciendo.com/article/10.5617/jeb.2985

A software to display, record and data processing of physiological signals. DataLyser is custom-built software developed at Walter Reed Army Institute of Research, Silver Spring, MD. It is not copyrighted.

Proper citation: DataLyser (RRID:SCR_022783) Copy   

•   Source: SciCrunch Registry

https://github.com/wtsi-hpag/PretextMap

Software tool to convert SAM formatted read pairs into genome contact maps. Prepares alignments for visualization with PretextView.

Proper citation: PretextMap (RRID:SCR_022023) Copy   

•   Source: SciCrunch Registry

https://www.openanatomy.org/

Project aims to change anatomy atlas by building atlases through open data, community based collaborative development, and free distribution of medical knowledge. Provides access to several 2D and 3D browser based tools.

Proper citation: Open Anatomy Project (RRID:SCR_022141) Copy   

•   Source: SciCrunch Registry

https://gitlab.com/PlantGenomicsLab/gFACs

Software package provides comprehensive framework for evaluating, filtering, and analyzing gene models from range of input applications and preparing these annotations for formal publication or downstream analysis.

Proper citation: gFACs (RRID:SCR_022017) Copy   

•   Source: SciCrunch Registry

https://www.childrensmercy.org/childrens-mercy-research-institute/studies-and-trials/genomic-answers-for-kids/

Flagship initiative of Childrens Mercy Research Institute and Genomic Medicine Center in Kansas City. This research program is building pediatric data repository to facilitate search for answers and novel treatments.Goal is to collect genomic data and health information for 30,000 children and their families to create a database of genomes.

Proper citation: Genomic Answers for Kids (RRID:SCR_021840) Copy   

•   Source: SciCrunch Registry

https://kimlab.io/brain-map/atlas/

Labels provide resource to isolate and identify mouse brain anatomical structures. Cell type specific transgenic mice and an MRI atlas were used to adjust and further segment the labels. Highly segmented anatomical labels in the adult mouse brain common coordinate framework.

Proper citation: Enhanced and Unified Anatomical Labeling for Common Mouse Brain Atlas (RRID:SCR_022816) Copy   

•   Source: SciCrunch Registry

https://labsyspharm.github.io/dubportal

Provides integration and analysis of publicly available resources as well as newly collected transcriptomic data following deubiquitinating enzyme (DUB) knockout or inhibition to facilitate exploration of DUB function in oncology.

Proper citation: DUB Portal (RRID:SCR_022476) Copy   

•   Source: SciCrunch Registry

https://www.wikidata.org/wiki/Wikidata:WikiProject_Zika_Corpus

Web portal related to Zika virus, including metadata collection for academic publications on the topic, structured data ontology of terms, and integrated resources in the Wikidata platform.

Proper citation: WikiProject Zika Corpus (RRID:SCR_022079) Copy   

•   Source: SciCrunch Registry

https://www.syngene.com/software/genetools-automatic-image-analysis/

Software package includes comprehensive tools to provide full range of analysis for applications including chemiluminescence, chemifluorescence, fluorescence, colorimetric imaging and colony counting.

Proper citation: GeneTools (RRID:SCR_022505) Copy   

•   Source: SciCrunch Registry

https://drive.google.com/drive/folders/1K5oiXPcZDPT40irrZ_G2hZ86uNGA7CYZ?usp=sharing

Reference atlas for mice. Contains both average and annotation templates.

Proper citation: fMOST Atlas (RRID:SCR_022868) Copy   

•   Source: SciCrunch Registry

https://csharp.stanford.edu/

Center coordinates ideas and investments to advance and democratize access to Stanford cores, instrumentation, scientific and technical staff, allowing users to perform innovative, rigorous experiments.

Proper citation: Stanford University Community of Shared Advanced Research Platforms (RRID:SCR_022986) Copy   

•   Source: SciCrunch Registry

https://github.com/PedroBarbosa/Prepare_SplicingPredictors

Software tool as set of scripts to prepare the input for several sequence-based RNA splicing methods from VCF files.

Proper citation: Prepare_SplicingPredictors (RRID:SCR_023316) Copy   

•   Source: SciCrunch Registry

https://www.mitochondriasci.com/cardiac-diseases.html

Creative Biogene provides range of services and products to assist researchers in cardiac disease related mitochondria studies. Offers comprehensive testing services for evaluation of variety of cardiac diseases. Mitochondria focused testings and services with advantage of animal based models.

Proper citation: Creative Biogene Mitochondria and Cardiac Diseases (RRID:SCR_022083) Copy   

•   Source: SciCrunch Registry

https://www.mitochondriasci.com/cancer.html

Creative Biogene provides comprehensive range of services and products to assist researchers in cancer related mitochondria studies. Offers tests and services with advantage of cell based and animal based models.

Proper citation: Creative Biogene Mitochondrial Gene Mutations (RRID:SCR_022082) Copy   

•   Source: SciCrunch Registry

https://gillisweb.cshl.edu/Primate_MTG_coexp/

We aligned single-nucleus atlases of middle temporal gyrus (MTG) of 5 primates (human, chimp, gorilla, macaque and marmoset) and identified 57 consensus cell types common to all species. We provide this resource for users to: 1) explore conservation of gene expression across primates at single cell resolution; 2) compare with conservation of gene coexpression across metazoa, and 3) identify genes with changes in expression or connectivity that drive rapid evolution of human brain.

Proper citation: Gene functional conservation across cell types and species (RRID:SCR_023292) Copy   

•   Source: SciCrunch Registry

https://www.mitochondriasci.com/syndromes.html

Creative Biogene works with you to validate and explore pathogenesis of mitochondria associated syndromes and possible interventions, with professional services and products to support your research. Provides rapid mitochondrial function testing services, allowing clients to accurately analyze relationship between disease and mitochondria.

Proper citation: Creative Biogene Mitochondria Associated Syndromes (RRID:SCR_022081) Copy   

•   Source: SciCrunch Registry

https://yoda.yale.edu/

Project to promote and facilitate sharing of clinical trial data. Provides set of policies to set standards to enhance data availability and transparency in support of strong scientific research which aims to advance scientific and medical knowledge with goal of improving public health and healthcare delivery. Project has the final decision making rights regarding these policies and granting or denial of data requests, as per contractual agreements between the YODA Project and its partners.

Proper citation: Yoda Project (RRID:SCR_022761) Copy   

•   Source: SciCrunch Registry

https://genetics.opentargets.org/

Portal offers features to help discover associations between genes, variants, and traits including Browse and rank gene and variant associations identified by Locus-to-Gene (L2G) scoring pipeline, Uncover credible sets for variant and trait associations based on mapping analyses pipeline, Explore and compare studies from UK Biobank, FinnGen, and GWAS Catalog using multi-trait comparison tool eQTL Catalogue.

Proper citation: Open Targets Genetics Portal (RRID:SCR_021701) Copy   

•   Source: SciCrunch Registry

https://cometbio.org/

Software tool to quantify comet parameters while studying DNA strand breaks. Automated tool for comet assay image analysis.

Proper citation: OpenComet (RRID:SCR_021826) Copy   

•   Source: SciCrunch Registry

https://bruskolab.diabetes.ufl.edu/research/handel-i/

HANDEL-1 program to better understand normal human immune development by acquiring stromal and mucosal tissues from infant and pediatric organ donors and to create novel and essential dataset informing immune system development in collaborative research project that leverages shared access to various tissues in conjunction with existing HANDEL-P program that seeks to understand development of pancreas and islet microenvironment in early life.

Proper citation: Human Atlas of Neonatal Development and Early Life Immunity (RRID:SCR_021947) Copy   

•   Source: SciCrunch Registry