Searching the RRID Resource Information Network
Are you sure you want to leave this community? Leaving the community will revoke any permissions you have been granted in this community.
SciCrunch Registry is a curated repository of scientific resources, with a focus on biomedical resources, including tools, databases, and core facilities - visit SciCrunch to register your resource.
| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Izon Control Suite Resource Report Resource Website 1+ mentions |
Izon Control Suite (RRID:SCR_021922) | software resource | Data acquisition software. Allows raw or filtered measurement data to be viewed in real time. Part of qNano system. Izon Control Suite Software V3.4 is maintenance software release that updates Izon current software. | Izon Science Ltd, data acquisition, nanotechnology | is related to: Izon: qNano Gold | Free, Available for download, Freely available | https://support.izon.com/how-can-i-get-the-latest-software-release | SCR_021922 | SciCrunch Registry | qNano Control Suite Software, Izon Control Suite Software V3.4, Izon Control Suite Software, Izon qNano Control Suite Software | 2026-10-10 12:42:00 | 3 | ||||||||
|
University of Puerto Rico Caribbean Primate Research Center Resource Report Resource Website 50+ mentions |
University of Puerto Rico Caribbean Primate Research Center (RRID:SCR_021920) | CPRC | biomaterial supply resource, material resource, organism supplier | Facilitates supply of conventional and specific pathogen free nonhuman primates and biological samples. Priority is given to NIH-funded investigators in universities, NIH Intramural Program, and contractors working on behalf of researchers conducting experiments under NIH-funded programs. Non-NIH-funded investigators may still be considered depending on resource availability.To request for CPRC animals, authorized representative of institution will need to submit Animal Allocation Request form. | CPRC Resource Distribution, rhesus macaques, nonhuman primates supply, biological samples supply, resource distribution, Conventional and Specific Pathogen Free nonhuman primates | has parent organization: University of Puerto Rico; Puerto Rico; USA | Restricted | SCR_021920 | SciCrunch Registry | University of Puerto Rico Caribbean Primate Research Center Resource Distribution Core | 2026-10-10 12:41:32 | 76 | ||||||||
|
Bio-Rad: T100 Thermal Cycler Resource Report Resource Website 1+ mentions |
Bio-Rad: T100 Thermal Cycler (RRID:SCR_021921) | instrument resource | Small compact 96well thermal cycler. PCR system features intuitive touch screen and thermal gradient technology to optimize reaction in single run. | BioRad, 96well thermal cycler, thermal cycler, PCR system, RT PCR, touch screen, thermal gradient technology, instrument, equipment, USEDit | https://raw.githubusercontent.com/SciCrunch/RRID-Instruments/refs/heads/main/PDF/SCR_021921.pdf | Model_Number_T100_Thermal_Cycler | SCR_021921 | SciCrunch Registry | T100 Thermal Cycler | 2026-10-10 12:41:43 | 7 | |||||||||
|
MFDp2 Resource Report Resource Website 1+ mentions |
MFDp2 (RRID:SCR_021885) | data access protocol, software resource, web service | Web tool for accurate prediction of disorder in proteins by fusion of disorder probabilities, content and profiles. | protein disorder, accurate prediction, disorder in proteins, disorder prediction, disorder probabilities | Natural Sciences and Engineering Research Council of Canada ; University of Alberta |
PMID:28516009 | Free, Freely available | SCR_021885 | SciCrunch Registry | Multilayered Fusion based Disorder predictor v. 2.00 | 2026-10-10 12:41:33 | 4 | ||||||||
|
PrDOS Resource Report Resource Website 10+ mentions |
PrDOS (RRID:SCR_021886) | data access protocol, software resource, web service | Web server to predict natively disordered regions of protein chain from its amino acid sequence. Returns disorder probability of each residue as prediction results. | predict natively disordered regions, protein chain, protein chain prediction, disordered regions, disorder probability | SCR_021886 | SciCrunch Registry | 2026-10-10 12:41:31 | 39 | ||||||||||||
|
3DRefine Resource Report Resource Website 10+ mentions |
3DRefine (RRID:SCR_021883) | data access protocol, software resource, web service | Interactive web server for efficient protein structure refinement with capability to perform web based statistical and visual analysis. | efficient protein structure refinement, statistical and visual analysis | NIGMS R01 GM093123 | DOI:10.1093/nar/gkw336 | Free, Freely available | SCR_021883 | SciCrunch Registry | 2026-10-10 12:41:59 | 32 | |||||||||
|
JSpeciesWS Resource Report Resource Website 10+ mentions |
JSpeciesWS (RRID:SCR_022059) | data access protocol, software resource, web service | Web server for prokaryotic species circumscription based on pairwise genome comparison. Service for in silico calculating extent of identity between two genomes, parameter routinely used in process of polyphasic microbial species circumscription. Service measures average nucleotide identity. | prokaryotic species circumscription, pairwise genome comparison, average nucleotide identity measurement | European Community Seventh Framework Programme | PMID:26576653 | Free, Freely available | SCR_022059 | SciCrunch Registry | JSpecies Web Server | 2026-10-10 12:41:44 | 33 | ||||||||
|
HaploMaker Resource Report Resource Website 1+ mentions |
HaploMaker (RRID:SCR_021928) | software resource | Software pipeline for haplotype assembly of diploid genomes using paired end or PacBio reads. | haplotype assembly, diploid genomes, paired end reads, PacBio reads | Free, Available for download, Freely available | SCR_021928 | SciCrunch Registry | 2026-10-10 12:41:32 | 1 | |||||||||||
|
GOnet Resource Report Resource Website 1+ mentions |
GOnet (RRID:SCR_018977) | data access protocol, service resource, software resource, web service | Web tool for interactive Gene Ontology analysis of any biological data sources resulting in gene or protein lists. | Gene Ontology, interactive analysis, data, gene, protein, gene list, protein list, analysis, bio.tools |
is listed by: Debian is listed by: bio.tools works with: Gene Ontology |
NHGRI R24 HG010032; NIAID U19 AI118610; NIAID U19 AI118626; NIGMS ; NIH Common Fund |
PMID:30526489 | biotools:GOnet | https://github.com/mikpom/gonet, https://bio.tools/GOnet | SCR_018977 | SciCrunch Registry | 2026-10-10 12:40:23 | 7 | |||||||
|
Cole-Parmer: Masterflex L/S Variable Speed Digital Drive with Remote I/O peristaltic pump Resource Report Resource Website 1+ mentions |
Cole-Parmer: Masterflex L/S Variable Speed Digital Drive with Remote I/O peristaltic pump (RRID:SCR_019028) | instrument resource | Peristaltic pump with flow rate 0.06 to 3400 mL/min, three digit LED display, reversible motor, LED indicators to confirm motor direction and speed range from 6 to 600 rpm. | Pump, reversible motor, peristaltic pump, LED display, variable speed, Perkin Parmer | is listed by: USEDit | Restricted | SCR_019028 | SciCrunch Registry | 6 to 600 rpm; 90 to 260 VAC, Masterflex L/S Variable-Speed Digital Drive with Remote I/O | 2026-10-10 12:41:01 | 4 | |||||||||
|
Toolbox for Representational Similarity Analysis Resource Report Resource Website 1+ mentions |
Toolbox for Representational Similarity Analysis (RRID:SCR_019029) | data analysis software, data processing software, software application, software resource, software toolkit | Software Matlab toolbox to perform representational similarity analysis for neural data. | Representional similarity analysis, data analysis, data, neural data |
is related to: MATLAB has parent organization: University of Cambridge; Cambridge; United Kingdom |
European Research Council Advanced Grant ; European Research Council Starting Grant ; UK Medical Research Council |
PMID:24743308 | Free, Available for download, Freely available | SCR_019029 | SciCrunch Registry | RSA toolbox | 2026-10-10 12:40:32 | 9 | |||||||
|
Mitoprot Resource Report Resource Website 50+ mentions |
Mitoprot (RRID:SCR_019023) | data access protocol, simulation software, software application, software resource, web service | Web server for prediction of mitochondrial targeting sequences. | Mitochondrial targeting sequence, sequence prediction, mitochondrial sequence, prediction | Free, Freely available | SCR_019023 | SciCrunch Registry | 2026-10-10 12:40:31 | 53 | |||||||||||
|
LTRharvest Resource Report Resource Website 10+ mentions |
LTRharvest (RRID:SCR_018970) | data analysis software, data processing software, simulation software, software application, software resource | Software tool for de novo detection of full length LTR retrotransposons in large sequence sets. Delivers high quality annotations based on known LTR transposon features like length, distance, and sequence motifs. | De novo detection, full length LTR retrotransposons, retrotransposon, large sequence, annotation, sequence length, sequence distance, sequence motif | has parent organization: University of Hamburg; Hamburg; Germany | PMID:18194517 | https://www.zbh.uni-hamburg.de/en/forschung/gi/software/ltrharvest.html | SCR_018970 | SciCrunch Registry | 2026-10-10 12:40:23 | 47 | |||||||||
|
Guide Design Resources Resource Report Resource Website 100+ mentions |
Guide Design Resources (RRID:SCR_018982) | data or information resource, laboratory portal, organization portal, portal | Laboratory portal about research including new approaches for precision gene editing, delivery of molecular and genetic cargo, discovery of novel programmable systems, and engineering of immune system to develop next generation of therapeutics. Provides collection of tools for guide design.CRISPR.MIT.EDU of Guide Design Tools is no longer available, documented on August 28,2020. | Guide desin tools, precision gene editing, immune system engineering, next generation therapeutics, guide design | has parent organization: Broad Institute | Free, Freely available | SCR_018982 | SciCrunch Registry | 2026-10-10 12:40:23 | 353 | ||||||||||
|
Bio-Rad: ChemiDoc MP Imaging System Resource Report Resource Website 100+ mentions |
Bio-Rad: ChemiDoc MP Imaging System (RRID:SCR_019037) | instrument resource | Instrument for imaging and analyzing gels and western blots by Bio Rad. Designed to address multiplex fluorescent western blotting, chemiluminescence detection, general gel documentation applications, and stain-free technology imaging needs. | Imaging system, Bio Rad, gel imager, gel imager system, chemiluminescence detection | is listed by: USEDit | https://raw.githubusercontent.com/SciCrunch/RRID-Instruments/refs/heads/main/PDF/SCR_019037.pdf | https://www.bio-rad.com/webroot/web/pdf/lsr/literature/10000076957.pdf | SCR_019037 | SciCrunch Registry | Wester Blot Imaging, ChemiDoc MP Imaging System | 2026-10-10 12:40:24 | 117 | ||||||||
|
IDseq Resource Report Resource Website 10+ mentions |
IDseq (RRID:SCR_019038) | analysis service resource, data or information resource, organism-related portal, portal, production service resource, service resource, topical portal | Open source cloud based pipeline and analysis service for metagenomic pathogen detection and monitoring. Hypothesis free global software platform that helps scientists identify pathogens in metagenomic sequencing data. IDseq Portal accepts raw mNGS data, performs host and quality filtration steps, then executes assembly based alignment pipeline which results in assignment of reads and contigs to taxonomic categories. | Metagenomic pathogen detection, metagenomic pathogen monitoring, identify pathogens, metagenomic sequencing data, data analysis | Chan Zuckerberg Initiative | DOI:10.1101/2020.04.07.030551 | Free, Freely available | https://github.com/chanzuckerberg/idseq-workflows/wiki | SCR_019038 | SciCrunch Registry | Infectious Disease Sequencing Platform, IDseq Portal | 2026-10-10 12:40:24 | 30 | |||||||
|
CLIP Tool Kit Resource Report Resource Website 10+ mentions |
CLIP Tool Kit (RRID:SCR_019034) | CTK | data analysis software, data processing software, software application, software resource, software toolkit | Software package that provides set of tools for analysis of CLIP data starting from raw reads generated by sequencer. | CLIP data, data analysis, raw reads, sequencer data generation, genome assemblies, data | has parent organization: Columbia University; New York; USA | Free, Available for download, Freely available | SCR_019034 | SciCrunch Registry | 2026-10-10 12:41:01 | 22 | |||||||||
|
Agilent MassHunter Qualitative Analysis Resource Report Resource Website 100+ mentions |
Agilent MassHunter Qualitative Analysis (RRID:SCR_019081) | data analysis software, data analytics software, data processing software, software application, software resource | Mass spectrometry screening software for confirmation of target or suspect compounds, and for identification of unknown analytes. Advanced data mining and processing options let find all detectable compounds and confirm targets or identify unknowns. Results can be displayed using data reporting with either preconfigured reports that simplify basic analyses, or completely customized PDF reports. | MassHunter Software, qualitative, mass spectrometry screening, target compound confirmation, unknown analytes identification, data mining, data processing, finding detectable compounds | SCR_019081 | SciCrunch Registry | MassHunter Qualitative Analysis | 2026-10-10 12:40:25 | 225 | |||||||||||
|
Gilson: Minipuls Evolution peristaltic pump Resource Report Resource Website 1+ mentions |
Gilson: Minipuls Evolution peristaltic pump (RRID:SCR_018955) | instrument resource | Multi channel peristaltic pump for applications with different viscous or abrasive fluids. Allows for channel cartridges, from one to sixteen, to be changed while pump is running. | Perfusion pump, Gilson, multi channel, pump, fluid, channel cartridges, miniplus evolution, instrument, equipment | Restricted | https://www.norlab.com/file/5996/download?token=C7AkKJUp | SCR_018955 | SciCrunch Registry | Peristaltic Pump, Perfusion Pump | 2026-10-10 12:40:23 | 4 | |||||||||
|
Harvard Apparatus: Single Animal Tabletop Isoflurane Anesthesia System with Small Induction Box Resource Report Resource Website 1+ mentions |
Harvard Apparatus: Single Animal Tabletop Isoflurane Anesthesia System with Small Induction Box (RRID:SCR_018956) | instrument resource | Tabletop anesthesia system suitable for mice, rats and other small animals under 10 lb. Passive scavenging systems. Funnel fill isoflurane vaporizers. | Rat Anesthesia, Mice Anesthesia, Small Animal Anesthesia, anesthesia, tabletop system, isoflurane vaporizer, instrument, equipment | is listed by: USEDit | Restricted | SCR_018956 | SciCrunch Registry | Tabletop Anesthesia System, Anesthesia Chamber | 2026-10-10 12:40:23 | 8 |
Can't find your Tool?
We recommend that you click next to the search bar to check some helpful tips on searches and refine your search firstly. Alternatively, please register your tool with the SciCrunch Registry by adding a little information to a web form, logging in will enable users to create a provisional RRID, but it not required to submit.
Welcome to the dkNET Resources search. From here you can search through a compilation of resources used by dkNET and see how data is organized within our community.
You are currently on the Community Resources tab looking through categories and sources that dkNET has compiled. You can navigate through those categories from here or change to a different tab to execute your search through. Each tab gives a different perspective on data.
If you have an account on dkNET then you can log in from here to get additional features in dkNET such as Collections, Saved Searches, and managing Resources.
Here is the search term that is being executed, you can type in anything you want to search for. Some tips to help searching:
If you are logged into dkNET you can add data records to your collections to create custom spreadsheets across multiple sources of data.
Here are the facets that you can filter the data by.
If you have any further questions please check out our FAQs Page to ask questions and see our tutorials. Click this button to view this tutorial again.
The NIDDK Information Network (dkNET) serves the needs of basic and clinical investigators by providing seamless access to large pools of data and research resources relevant to the mission of The National Institute of Diabetes Digestive and Kidney Diseases (NIDDK). dkNET is hosted at University of California San Diego, and is supported by NIH NIDDK grant U24DK097771.
Email: info_at_ dknet.org
