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https://support.izon.com/qnano-control-suite-software

Data acquisition software. Allows raw or filtered measurement data to be viewed in real time. Part of qNano system. Izon Control Suite Software V3.4 is maintenance software release that updates Izon current software.

Proper citation: Izon Control Suite (RRID:SCR_021922) Copy   

•   Source: SciCrunch Registry
  

http://cprc.rcm.upr.edu/?q=node/117

Facilitates supply of conventional and specific pathogen free nonhuman primates and biological samples. Priority is given to NIH-funded investigators in universities, NIH Intramural Program, and contractors working on behalf of researchers conducting experiments under NIH-funded programs. Non-NIH-funded investigators may still be considered depending on resource availability.To request for CPRC animals, authorized representative of institution will need to submit Animal Allocation Request form.

Proper citation: University of Puerto Rico Caribbean Primate Research Center (RRID:SCR_021920) Copy   

•   Source: SciCrunch Registry
  

https://www.bio-rad.com/en-us/product/t100-thermal-cycler?ID=LGTWGIE8Z

Small compact 96well thermal cycler. PCR system features intuitive touch screen and thermal gradient technology to optimize reaction in single run.

Proper citation: Bio-Rad: T100 Thermal Cycler (RRID:SCR_021921) Copy   

•   Source: SciCrunch Registry
  

http://biomine.cs.vcu.edu/servers/MFDp2/

Web tool for accurate prediction of disorder in proteins by fusion of disorder probabilities, content and profiles.

Proper citation: MFDp2 (RRID:SCR_021885) Copy   

•   Source: SciCrunch Registry
  

https://prdos.hgc.jp/cgi-bin/top.cgi

Web server to predict natively disordered regions of protein chain from its amino acid sequence. Returns disorder probability of each residue as prediction results.

Proper citation: PrDOS (RRID:SCR_021886) Copy   

•   Source: SciCrunch Registry
  

http://sysbio.rnet.missouri.edu/3Drefine/

Interactive web server for efficient protein structure refinement with capability to perform web based statistical and visual analysis.

Proper citation: 3DRefine (RRID:SCR_021883) Copy   

•   Source: SciCrunch Registry
  

http://jspecies.ribohost.com/jspeciesws/#analyse

Web server for prokaryotic species circumscription based on pairwise genome comparison. Service for in silico calculating extent of identity between two genomes, parameter routinely used in process of polyphasic microbial species circumscription. Service measures average nucleotide identity.

Proper citation: JSpeciesWS (RRID:SCR_022059) Copy   

•   Source: SciCrunch Registry
  

https://github.com/mfruzan/HaploMaker

Software pipeline for haplotype assembly of diploid genomes using paired end or PacBio reads.

Proper citation: HaploMaker (RRID:SCR_021928) Copy   

•   Source: SciCrunch Registry
  

http://tools.dice-database.org/GOnet/)

Web tool for interactive Gene Ontology analysis of any biological data sources resulting in gene or protein lists.

Proper citation: GOnet (RRID:SCR_018977) Copy   

•   Source: SciCrunch Registry
  

https://www.coleparmer.in/i/masterflex-l-s-variable-speed-digital-drive-with-remote-i-o-6-to-600-rpm-90-to-260-vac/0752810

Peristaltic pump with flow rate 0.06 to 3400 mL/min, three digit LED display, reversible motor, LED indicators to confirm motor direction and speed range from 6 to 600 rpm.

Proper citation: Cole-Parmer: Masterflex L/S Variable Speed Digital Drive with Remote I/O peristaltic pump (RRID:SCR_019028) Copy   

•   Source: SciCrunch Registry
  

http://www.mrc-cbu.cam.ac.uk/methods-and-resources/toolboxes/license/

Software Matlab toolbox to perform representational similarity analysis for neural data.

Proper citation: Toolbox for Representational Similarity Analysis (RRID:SCR_019029) Copy   

•   Source: SciCrunch Registry
  

https://ihg.gsf.de/ihg/mitoprot.html

Web server for prediction of mitochondrial targeting sequences.

Proper citation: Mitoprot (RRID:SCR_019023) Copy   

•   Source: SciCrunch Registry
  

http://genometools.org/

Software tool for de novo detection of full length LTR retrotransposons in large sequence sets. Delivers high quality annotations based on known LTR transposon features like length, distance, and sequence motifs.

Proper citation: LTRharvest (RRID:SCR_018970) Copy   

•   Source: SciCrunch Registry
  

https://zlab.bio/guide-design-resources

Laboratory portal about research including new approaches for precision gene editing, delivery of molecular and genetic cargo, discovery of novel programmable systems, and engineering of immune system to develop next generation of therapeutics. Provides collection of tools for guide design.CRISPR.MIT.EDU of Guide Design Tools is no longer available, documented on August 28,2020.

Proper citation: Guide Design Resources (RRID:SCR_018982) Copy   

•   Source: SciCrunch Registry
  

https://www.bio-rad.com/en-in/product/chemidoc-mp-imaging-system?ID=NINJ8ZE8Z

Instrument for imaging and analyzing gels and western blots by Bio Rad. Designed to address multiplex fluorescent western blotting, chemiluminescence detection, general gel documentation applications, and stain-free technology imaging needs.

Proper citation: Bio-Rad: ChemiDoc MP Imaging System (RRID:SCR_019037) Copy   

•   Source: SciCrunch Registry
  

https://idseq.net/

Open source cloud based pipeline and analysis service for metagenomic pathogen detection and monitoring. Hypothesis free global software platform that helps scientists identify pathogens in metagenomic sequencing data. IDseq Portal accepts raw mNGS data, performs host and quality filtration steps, then executes assembly based alignment pipeline which results in assignment of reads and contigs to taxonomic categories.

Proper citation: IDseq (RRID:SCR_019038) Copy   

•   Source: SciCrunch Registry
  

https://zhanglab.c2b2.columbia.edu/index.php/CTK_Documentation

Software package that provides set of tools for analysis of CLIP data starting from raw reads generated by sequencer.

Proper citation: CLIP Tool Kit (RRID:SCR_019034) Copy   

•   Source: SciCrunch Registry
  

https://www.agilent.com/en/product/software-informatics/mass-spectrometry-software/data-analysis/qualitative-analysis

Mass spectrometry screening software for confirmation of target or suspect compounds, and for identification of unknown analytes. Advanced data mining and processing options let find all detectable compounds and confirm targets or identify unknowns. Results can be displayed using data reporting with either preconfigured reports that simplify basic analyses, or completely customized PDF reports.

Proper citation: Agilent MassHunter Qualitative Analysis (RRID:SCR_019081) Copy   

•   Source: SciCrunch Registry
  

https://www.norlab.com/library/brochure/11566

Multi channel peristaltic pump for applications with different viscous or abrasive fluids. Allows for channel cartridges, from one to sixteen, to be changed while pump is running.

Proper citation: Gilson: Minipuls Evolution peristaltic pump (RRID:SCR_018955) Copy   

•   Source: SciCrunch Registry
  

https://www.harvardapparatus.com/tabletop-anesthesia-systems.html#collapseTwo

Tabletop anesthesia system suitable for mice, rats and other small animals under 10 lb. Passive scavenging systems. Funnel fill isoflurane vaporizers.

Proper citation: Harvard Apparatus: Single Animal Tabletop Isoflurane Anesthesia System with Small Induction Box (RRID:SCR_018956) Copy   

•   Source: SciCrunch Registry