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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | ||||||||||||||
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Circa Resource Report Resource Website 10+ mentions |
Circa (RRID:SCR_021828) | data analytics software, data processing software, data visualization software, software application, software resource | Software tool used to plot circular plots and visualize genomic data along genomic locations. | OMGenomics, | Restricted | SCR_021828 | SciCrunch Registry | visualize genomic data, OMGenomics Circa, circular plots | 2026-10-10 12:41:41 | 19 | ||||||||||
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ELAN Resource Report Resource Website 10+ mentions |
ELAN (RRID:SCR_021705) | software resource | Software annotation tool for audio and video recordings. Annotation can be sentence, word or gloss, comment, translation or description of any feature observed in media. Annotations can be created on multiple layers. Tiers can be hierarchically interconnected. Annotation can either be time-aligned to media or it can refer to other existing annotations. Content of annotations consists of Unicode text and annotation documents are stored in XML format (EAF). | Annotation tool, audio recordings, video recordings, Unicode text, annotation documents, documents stored, XML format | has parent organization: Max Planck Institute for Psycholinguistics; Nijmegen; Netherlands | Free, Available for download, Freely available | SCR_021705 | SciCrunch Registry | 2026-10-10 12:41:38 | 28 | ||||||||||
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PsychENCODE Resource Report Resource Website 1+ mentions |
PsychENCODE (RRID:SCR_021760) | consortium, data or information resource, organization portal, portal | Collaboration between research institutes working to provide framework of regulatory genomic elements in individuals with neuropsychiatric disorders.Collaboration has resulted in comprehensive set of manuscripts published in Science providing new insights into biology of developing, adult, and diseased human brain.Manuscripts are organized around three flagship articles, first analyzing human development, second studying disease transcriptomes, and third integrating tissue and single cell data with deep learning approaches. | regulatory genomic elements, neuropsychiatric disorders, diseased human brain, manuscripts published in Science | Free, Freely available | SCR_021760 | SciCrunch Registry | 2026-10-10 12:41:32 | 9 | |||||||||||
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Biomed Resource Watch Resource Report Resource Website |
Biomed Resource Watch (RRID:SCR_021761) | data or information resource, data repository, service resource, storage service resource | Knowledgebase of biomedical research resources. Repository for storing validation and problematic information about variety of entities within biomedical domain, such as antibodies, cell lines, etc. Enables researchers to submit their own claims about specific entity to make validation/problematic information F.A.I.R. (Findable, Accessable, Interoperable, Reuseable). | FAIR data, biomedical data, data validation, problematic information, problematic cell line, problematic antibody | Free, Available for download, Freely available | SCR_021761 | SciCrunch Registry | 2026-10-10 12:41:29 | 0 | |||||||||||
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Rescognito Resource Report Resource Website |
Rescognito (RRID:SCR_021874) | data access protocol, data or information resource, portal, software resource, topical portal, web service | Platform for recognizing and promoting Open Research. Open online service that aims to offer fairer and more democratic platform for recognizing researcher contributions.Allows researchers to openly acknowledge colleagues for meaningful contributions to research process, such as Publication, Mentoring,Teaching,Data sharing,Reproducibility practices, Sharing negative results, Participation in discussion groups,Software development, Clinical trials management, Leadership, Community outreach, Public engagement. ORCID iDs, DOIs, grant IDs and other persistent identifiers are used where available as links to appropriate contributions. | Open Research, Rescognito Inc., platform for recognizing researcher contributions | Free, Freely available | SCR_021874 | SciCrunch Registry | 2026-10-10 12:41:59 | 0 | |||||||||||
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Seq-N-Slide Resource Report Resource Website 10+ mentions |
Seq-N-Slide (RRID:SCR_021752) | software resource | Set of automated workflows for common sequencing based (Illumina) protocols, such as RNA-seq, ChIP-seq, ATAC-seq, WGBS/RRBS methylation, whole genome/exome/targeted variant detection, and contaminant screening. Sequencing data analysis pipelines. | Sequencing data analysis pipelines | Free, Available for download, Freely available | SCR_021752 | SciCrunch Registry | 2026-10-10 12:41:39 | 20 | |||||||||||
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Halvade Somatic Resource Report Resource Website 1+ mentions |
Halvade Somatic (RRID:SCR_021771) | software resource | Software implements germline and somatic variant calling pipelines based on best practices pipelines from Broad Institute using Spark framework. Produces VCF output file which contains single nucleotide polymorphisms (SNPs) and short insertions and deletions (indels) when supported by used tools. Program requires Spark on either local cluster with one or more nodes, Amazon EMR cluster or Docker image to run. | somatic variant, GATK, Halvade, VCF output file, germline, somatic variant calling, Spark framework | uses: GATK | Free, Available for download, Freely available | SCR_021771 | SciCrunch Registry | Halvade for Spark | 2026-10-10 12:41:32 | 1 | |||||||||
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Online Kappa Calculator Resource Report Resource Website 10+ mentions |
Online Kappa Calculator (RRID:SCR_021770) | software resource | Software tool can be used to calculate kappa, chance adjusted measure of agreement, for any number of cases, categories, or raters. | Calculator, calculate kappa, chance adjusted measure of agreement, number of cases, number of categories, number of | Free, Freely available | SCR_021770 | SciCrunch Registry | 2026-10-10 12:41:57 | 13 | |||||||||||
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Zeiss LabScope Resource Report Resource Website 1+ mentions |
Zeiss LabScope (RRID:SCR_021768) | data acquisition software, data processing software, image acquisition software, software application, software resource | Software tool for image acquisition using WiFi-enabled Zeiss microscopes. Compatible with Windows PCs and with Apple tablets., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025. | Image acquisition, acquisition using WiFi enabled Zeiss microscopes, Zeiss | THIS RESOURCE IS NO LONGER IN SERVICE | SCR_021768 | SciCrunch Registry | Zeiss LabScope software | 2026-10-10 12:41:29 | 4 | ||||||||||
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Atherosclerosis Risk in Communities Resource Report Resource Website 10+ mentions |
Atherosclerosis Risk in Communities (RRID:SCR_021769) | ARIC | data or information resource, disease-related portal, portal, topical portal | Platform for prospective epidemiologic study conducted in four U.S. communities. One of most significant and longest running heart health studies and is the largest study of heart health in African Americans. ARIC investigates risk factors for heart disease and stroke, and connections between cardiovascular and cognitive health. ARIC includes two parts: Cohort Component and Community Surveillance Component. Cohort Component began in 1987, and each ARIC field center randomly selected and recruited cohort sample of individuals aged 45-64 from defined population in their community, to receive extensive examinations, including medical, social, and demographic data. In Community Surveillance Component, four communities are investigated to determine long term trends in hospitalized myocardial infarction and coronary heart disease deaths in men and women aged 35-84 years. | Heart health studies, epidemiologic study, heart disease risk factors, stroke risk factors, cardiovascular and cognitive health connection, atherosclerosis risk | coronary heart disease, stroke, myocardial infarction, atherosclerosis | NHLBI | PMID:2646917 PMID:34112321 |
Free, Freely available | SCR_021769 | SciCrunch Registry | The Atherosclerosis Risk in Communities (ARIC) Study | 2026-10-10 12:41:39 | 43 | ||||||
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Papers with Code Resource Report Resource Website 10+ mentions |
Papers with Code (RRID:SCR_021800) | data or information resource, portal, topical portal | Website devoted to papers that contain machine learning datasets, code, methods and evaluation tables. Done together with community, supported by NLP and ML.All content on this website is openly licenced under CC-BY-SA and everyone can contribute.Also operates specialized portals for papers with code in astronomy, physics, computer sciences, mathematics and statistics. | article, machine learning datasets, code, methods, evaluation tables | Free, Freely available | SCR_021800 | SciCrunch Registry | 2026-10-10 12:41:30 | 20 | |||||||||||
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IonWizard Resource Report Resource Website 1+ mentions |
IonWizard (RRID:SCR_021764) | data acquisition software, data processing software, software application, software resource | Software tool to perform rapid fluorescence and morphometric real time, synchronous data acquisition with IonOptix systems, as well as polynomial fitting and analysis for myocyte research. Features include data trace averaging and filtering,composite images, and transient analysis. Integrates presentation of fluorescence traces and images, analog voltages, and cell length data under intuitive interface. Analyzes raw data by performing ratio, ion, or linear calibration calculations. | IONOPTIX LLC, polynomial fitting, analysis for myocyte research, data trace averaging and filtering, fluorescence, morphometry | Restricted | SCR_021764 | SciCrunch Registry | IonOptix IonWizard | 2026-10-10 12:41:57 | 8 | ||||||||||
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FigsharePlus Resource Report Resource Website 1+ mentions |
FigsharePlus (RRID:SCR_021762) | data or information resource, data repository, service resource, storage service resource | Web based interface designed for academic research data management and research data dissemination. Accepts all file types. Enables academics to upload, share, cite and discover all manner of research outputs with security of knowing our hosting options and platform support long term preservation of data.Used to share big datasets from 100GB up. Added features and expert guidance are also included for sharing your data FAIR-ly.During data deposit, personal email support is available and once submitted, Figshare data expert will conduct review of the metadata and spot check of your dataset files and offer guidance, with main aim of enhancing discoverability and reusability. | FAIR data |
is related to: FigShare is related to: NIH Figshare Archive |
https://plus.figshare.com/, https://github.com/figshare/user_documentation | SCR_021762 | SciCrunch Registry | 2026-10-10 12:41:39 | 1 | ||||||||||
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TriKinetics DAMSystem3 Software Resource Report Resource Website 1+ mentions |
TriKinetics DAMSystem3 Software (RRID:SCR_021809) | data acquisition software, data processing software, software application, software resource | Software tool for data collection to upload output from set of activity monitors and periodically saves it in disk files on Macintosh or Windows PC. Part of TriKinetics Drosophila Activity Monitoring System. | TriKinetics Inc USA, data collection | is related to: TriKinetics: Drosophila Activity Monitoring System | Free, Freely available, Available for download | https://www.trikinetics.com/Downloads/QuickStart%20Guide.pdf | SCR_021809 | SciCrunch Registry | 2026-10-10 12:41:33 | 4 | |||||||||
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Mouse Developmental Anatomy Ontology Browser Resource Report Resource Website 1+ mentions |
Mouse Developmental Anatomy Ontology Browser (RRID:SCR_021808) | EMAPA | data access protocol, software resource, web service | Browser for mouse developmental anatomy. Ontology of mouse developmental anatomy was originally developed by Jonathan Bard and his colleagues as part of Edinburgh Mouse Atlas Project (EMAP) in order to provide structured controlled vocabulary of stage specific anatomical structures for developing laboratory mouse. | mouse developmental anatomy, mouse developmental ontology, mouse developmental anatomy ontology, structured controlled vocabulary, stage specific anatomical structures, developing laboratory mouse | Free, Freely available | http://www.obofoundry.org/ontology/emapa.html | SCR_021808 | SciCrunch Registry | Mouse Developmental Anatomy Ontology, Mouse Developmental Anatomy Browser | 2026-10-10 12:41:58 | 1 | ||||||||
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PARASAIL Resource Report Resource Website 1+ mentions |
PARASAIL (RRID:SCR_021805) | alignment software, data processing software, image analysis software, software application, software resource | Software tool as multiple sequence alignement for global, local and semi global alignments. | multiple sequence alignement, global alignments, local alignments, semi global alignments, | is listed by: Debian | Pacific Northwest National Laboratory | DOI:10.1186/s12859-016-0930-z | Free, Available for download, Freely available | https://sources.debian.org/src/libparasail-dev/ | SCR_021805 | SciCrunch Registry | Pairwise Sequence Alignment Library | 2026-10-10 12:41:30 | 4 | ||||||
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LEON BIS Resource Report Resource Website 1+ mentions |
LEON BIS (RRID:SCR_021803) | data analysis software, data processing software, sequence analysis software, software application, software resource | Software tool for sequence alignments evaluation. Multiple alignment evaluation of sequence neighbours using Bayesian inference system. Used to distinguish sections in multiple sequence alignments that are conserved across whole family or within subfamilies, and should be useful for automatic, high-throughput genome annotations, 2D/3D structure predictions, protein-protein interaction predictions etc. | sequence alignments evaluation, distinguish sections, multiple sequence alignments, genome annotations, 2D/3D structure predictions, protein-protein interaction predictions | PMID:27387560 | Free, Available for download, Freely available | SCR_021803 | SciCrunch Registry | LEON-BIS | 2026-10-10 12:41:58 | 1 | |||||||||
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TrainingSpace Resource Report Resource Website 1+ mentions |
TrainingSpace (RRID:SCR_022036) | data or information resource, online course, portal, training resource | Portal that provides multimedia educational content from courses, conference lectures, and laboratory exercises from some of leading neuroscience institutes and societies to be more accessible to global neuroscience community. | Training materials resource, neuroscience multimedia educational content, neuroscience community | Free, Freely available | SCR_022036 | SciCrunch Registry | 2026-10-10 12:42:01 | 1 | |||||||||||
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CellScale: MicroTester G2 system Resource Report Resource Website 1+ mentions |
CellScale: MicroTester G2 system (RRID:SCR_022034) | instrument resource | System includes MicroTester G2 device and software. MicroTester G2 is mechanical test device that can be used to test properties of variety of tissues and materials. Main components of device are load application microbeam, actuators, imaging system, and fluid bath/test chamber. MicroTester G2 software is divided into two modules: data collection module and review and analysis module. | instrument, equipment, USEDit, CellScale, mechanical test device, test properties, tissues, materials | is listed by: USEDit | Restricted | https://www.cellscale.com/downloads2/MicroTester%20User%20ManualG2.pdf | SCR_022034 | SciCrunch Registry | SquisherJoy | 2026-10-10 12:41:43 | 3 | ||||||||
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Shahid Sadoughi University of Medical Sciences; Yazd; Iran Resource Report Resource Website 1+ mentions |
Shahid Sadoughi University of Medical Sciences; Yazd; Iran (RRID:SCR_022031) | university | Public university located in center of Iran in World Heritage city of Yazd. | SCR_022031 | SciCrunch Registry | Shahid Sadoughi University of Medical Sciences | 2026-10-10 12:41:35 | 2 |
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The NIDDK Information Network (dkNET) serves the needs of basic and clinical investigators by providing seamless access to large pools of data and research resources relevant to the mission of The National Institute of Diabetes Digestive and Kidney Diseases (NIDDK). dkNET is hosted at University of California San Diego, and is supported by NIH NIDDK grant U24DK097771.
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