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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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LACHESIS Resource Report Resource Website 50+ mentions |
LACHESIS (RRID:SCR_017644) | data processing software, software application, software resource | Software tool for chromosome scale scaffolding of de novo genome assemblies based on chromatin interactions.Method exploits signal of genomic proximity in Hi-C datasets for ultra long range scaffolding of de novo genome assemblies. | Chromosome, scale, scaffolding, de novo, genome, assembly, chromatin, Hi-C, data, clustering, contig | National Science Foundation ; NHGRI HG006283; NHGRI T32 HG000035 |
PMID:24185095 | Free, Available for download, Freely available | SCR_017644 | Ligating Adjacent Chromatin Enables Scaffolding In Situ | 2026-08-29 11:28:59 | 70 | ||||||||
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GNU Tar Resource Report Resource Website 1+ mentions |
GNU Tar (RRID:SCR_018216) | data processing software, software application, software resource | Software tool to create tar archives, as well as various other kinds of manipulation. Used to extract files, to store additional files, or to update or list files which were already stored. Can direct its output to available devices, files, or other programs, can access remote devices or files. | Archive, extract file, store file, update file, list file, access device, access file | Free Software Foundation | Free, Available for download, Freely available | SCR_018216 | GNU Tape archiver | 2026-08-29 11:28:54 | 3 | |||||||||
|
Mnemiopsis Genome Project Portal Resource Report Resource Website |
Mnemiopsis Genome Project Portal (RRID:SCR_018293) | MGP Portal | data or information resource, portal, project portal | Portal to obtain genomic information on Mnemiopsis. Data available provide annotations and other key biological information not available elsewhere. Used to advance research projects aimed at understanding phylogenetic diversity and evolution of proteins that play fundamental role in metazoan development. Collection of sequenced, assembled, annotated, and performed preliminary analysis of genome of Mnemiopsis. | Genomic, data, metazoan development, Mnemiopsis leidyi, Ctenophore, moel organisms, genomic data analysis |
is related to: University of Michigan; Ann Arbor; USA is related to: Brown University; Rhode Island; USA is related to: University of Florida; Florida; USA |
Free, Freely available | SCR_018293 | 2026-08-29 11:28:49 | 0 | |||||||||
|
Twins Research Australia Resource Report Resource Website 1+ mentions |
Twins Research Australia (RRID:SCR_017485) | data or information resource, portal | Portal for Twins Research Australia. Brings twins and researchers together for vital health research in twins. | Twin, research, Australia, data | has parent organization: University of Melbourne; Victoria; Australia | National Health and Medical Research Council | Free, Freely available | SCR_017485 | Australian Twin Registry | 2026-08-29 11:28:47 | 4 | ||||||||
|
GNU Awk Resource Report Resource Website 1+ mentions |
GNU Awk (RRID:SCR_018211) | GAWK | data processing software, software application, software resource | Software tool to select particular records in file and perform operations upon them. awk utility interprets special purpose programming language that makes it possible to handle simple data reformatting jobs with few lines of code. Source code for latest release of GNU awk is available from GNU project ftp server and its many mirrors. | Select record in file, perform operation of file, data reformatiing | Free, Freely available | SCR_018211 | 2026-08-29 11:28:54 | 7 | ||||||||||
|
KOMP2 Resource Report Resource Website 1+ mentions |
KOMP2 (RRID:SCR_017528) | data or information resource, portal, project portal | Knockout Mouse Phenotyping Project, JAX information about their contributions to KOMP2 project. Project to generate and phenotype single gene KO mouse strains from KOMP ES cell lines. Strains are phenotyped using protocols in pipeline designed by International Mouse Phenotyping Consortium. There are three NIH-funded phenotyping centers in United States: JAX, BaSH Consortium (Baylor College of Medicine, the Wellcome Trust Sanger Institute and MRC Harwell), and the DTCC Consortium (University of California at Davis, the Toronto Center for Phenogenomics, Children’s Hospital Oakland Research Institute (CHORI) and Charles River ). | Generate, phenotype, single, gene, KO mouse, strain, KOMP ES cell line, IMPC, JAX |
is related to: International Mouse Phenotyping Consortium (IMPC) is related to: Knockout Mouse Project is related to: Knockout Mouse Project |
NIH | Free, Freely available | SCR_017528 | Knockout Mouse Phenotyping Project | 2026-08-29 11:28:58 | 2 | ||||||||
|
Rhesus Macaque Brain Atlases Resource Report Resource Website |
Rhesus Macaque Brain Atlases (RRID:SCR_017533) | atlas, data or information resource, data set | Atlases enable alignment of individual scans to improve localization and statistical power of results, and allow comparison of results between studies and institutions. Set of multi subject atlas templates is constructed specifically for functional and structural imaging studies of rhesus macaque. | Collection, atlas, data, scan, functional, structural, imaging, rhesus macaque | is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) | Free, Available for download, Freely available | http://brainmap.wisc.edu/monkey.html | SCR_017533 | 2026-08-29 11:28:53 | 0 | |||||||||
|
Corneal Diseases Classification Resource Report Resource Website |
Corneal Diseases Classification (RRID:SCR_017416) | data processing software, image analysis software, software application, software resource | Software based on deep learning model for auto detect corneal diseases. Sample may contain multiple categories. After learning thousands of corneal images, you can make automatic judgments on subtypes of cornea. | Deep, learning, model, auto detect, corneal, disease, classification | Free, Available for download, Freely available | SCR_017416 | 2026-08-29 11:28:52 | 0 | |||||||||||
|
Purge_haplotigs Resource Report Resource Website 10+ mentions |
Purge_haplotigs (RRID:SCR_017616) | data processing software, software application, software resource | Pipeline for reassigning primary contigs that should be labelled as haplotigs. Used for third generation sequencing based assemblies to automate reassignment of allelic contigs, and to assist in manual curation of genome assemblies. | Reassigning, primary, contig, label, haplotig, third, generation, sequencing, assembly, allelic, curation, genome, alignment | PMID:30497373 | Free, Available for download, Freely available | SCR_017616 | 2026-08-29 11:28:48 | 14 | ||||||||||
|
QuASIMoDOH Resource Report Resource Website 1+ mentions |
QuASIMoDOH (RRID:SCR_018708) | QuASIMoDOH | data processing software, image analysis software, software application, software resource | Software tool to describe spatial patterns in degrees of inhomogeneity and to incorporate intensity based correction to analyze images with wide range of resolutions. Can be used to assess protein and lipid patterns, quantifying distribution changes and spatial reorganization at cell surface. | is a plug in for: ImageJ | Hercules foundation | PMID:27603951 | SCR_018708 | Quantitative Analysis of Spatial distributions in Images using Mosaic segmentation and Dual parameter Optimization in Histograms | 2026-08-29 11:28:54 | 1 | ||||||||
|
PsychENCODE Knowledge Portal Resource Report Resource Website 10+ mentions |
PsychENCODE Knowledge Portal (RRID:SCR_017500) | data or information resource, database, portal, project portal | Portal of PsychENCODE Consortium to study role of rare genetic variants involved in several psychiatric disorders. Database of regulatory elements, epigenetic modifications, RNA and protein in brain. | Rare, genetic, variant, psychiatric, disorder, regulatory, element, epigenetic, modification, RNA, protein, brain | Restricted | SCR_017500 | 2026-08-29 11:28:53 | 15 | |||||||||||
|
Agilent: 4200 TapeStation System Resource Report Resource Website 50+ mentions |
Agilent: 4200 TapeStation System (RRID:SCR_018435) | instrument resource | Benchtop genetic analyzer. Electrophoresis system for DNA and RNA sample quality control. It can be used for next generation sequencing or Biobank workflow. | Benchtop Genetic Analyzer, Instrument, Equipment, Agilent, USEDit, Next Generation Sequencing, ABRF, NGS | is listed by: USEDit | https://raw.githubusercontent.com/SciCrunch/RRID-Instruments/refs/heads/main/PDF/SCR_018435.pdf | Model_Number_4200 TapeStation, , SCR_018444, SCR_019398, SCR_019395 | https://www.agilent.com/cs/library/datasheets/public/5991-6029EN.pdf | SCR_018435 | , Agilent 4200 Tapestation Genetic Analyzer, Agilent 4200 TapeStation | 2026-08-29 11:29:00 | 63 | |||||||
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Fluorescent Imaging Analysis Software FIMAS Resource Report Resource Website 1+ mentions |
Fluorescent Imaging Analysis Software FIMAS (RRID:SCR_018311) | FIMAS | data processing software, image analysis software, software application, software resource | Software tool to perform basic and specific analysis procedures on fluorescent microscopy and fluorescent lifetime imaging microscopy data. Requires MATLAB with image processing and statistical toolboxes. Can import fluorescent data from Olympus, Biorad, Femtonics, TIFF, Excel, ASCII files. | Analysis procedure, fluorescent microscopy, fluorescent imaging, microscopy data, image processing, fluorescent data | uses: MATLAB | Free, Freely available | SCR_018311 | 2026-08-29 11:28:54 | 3 | |||||||||
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Recognition of Errors in Assemblies using Paired Reads Resource Report Resource Website 1+ mentions |
Recognition of Errors in Assemblies using Paired Reads (RRID:SCR_017625) | REAPR | data processing software, software application, software resource | Software tool to identify errors in genome assemblies without need for reference sequence. Can be used in any stage of assembly pipeline to automatically break incorrect scaffolds and flag other errors in assembly for manual inspection. Reports mis-assemblies and other warnings, and produces new broken assembly based on error calls. | Identify, error, genome, assembly, without, reference, sequence, incorrect, scaffold, error |
is listed by: Debian is listed by: OMICtools has parent organization: Wellcome Trust Sanger Institute; Hinxton; United Kingdom |
European Union ; JSPS KAKENHI ; Wellcome Trust |
PMID:23710727 | Free, Available for download, Freely available | OMICS_04068 | https://sources.debian.org/src/reapr/ | SCR_017625 | 2026-08-29 11:28:53 | 2 | |||||
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Thermo Fisher: Applied Biosystems: GeneAmp 9700 PCR Thermocycler System Resource Report Resource Website 10+ mentions |
Thermo Fisher: Applied Biosystems: GeneAmp 9700 PCR Thermocycler System (RRID:SCR_018436) | instrument resource | Automated PCR instrument for automated amplification of nucleic acids with Polymerase Chain Reaction. It has reaction volumes of up to 50 uL and sample temperature range of 4 to 99.9 C. | Matrix Assisted Laser Desorption Ionization Time of Flight Instrument, Instrument, Equipment, Applied Biosystems, USEDit, ABRF | is listed by: USEDit | https://raw.githubusercontent.com/SciCrunch/RRID-Instruments/main/PDF/SCR_018436.pdf | SCR_018448, SCR_019577, Model_Number_9700 | https://assets.thermofisher.com/TFS-Assets/LSG/manuals/cms_040970.pdf | SCR_018436 | 2026-08-29 11:28:54 | 13 | ||||||||
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Certified Genetool, Inc. Resource Report Resource Website |
Certified Genetool, Inc. (RRID:SCR_018678) | data or information resource, organization portal, portal, service resource | Provides services for USED lab instrument repairs.Recertified laboratory equipment commercially available. Comes fully re-certified to manufacturers standards with 90 day warranty. | USEDit, used lab instrument service, repair service, recertified laboratory equipment, manufacturer standard, ABRF, ABRF | is listed by: ABRF CoreMarketplace | Restricted | ABRF_835 | https://coremarketplace.org/?FacilityID=835 | SCR_018678 | Inc., Certified Genetool | 2026-08-29 11:29:00 | 0 | |||||||
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Dimensions COVID-19 publications, datasets and clinical trials Resource Report Resource Website |
Dimensions COVID-19 publications, datasets and clinical trials (RRID:SCR_018276) | data or information resource, portal | All Dimensions publications, datasets, and clinical trials related to COVID-19, updated daily. | COVID-19, COVID-19 data, COVID-19 literature, COVID-19 clinical trials | is listed by: Data and Computational Resources to Address COVID-19 | COVID-19 | Free, Freely available | SCR_018276 | 2026-08-29 11:28:59 | 0 | |||||||||
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CoMSES Net Resource Report Resource Website 1+ mentions |
CoMSES Net (RRID:SCR_017598) | data or information resource, organization portal, portal | Open community of researchers, educators, and professionals with goal of improving way we develop, share, use, and re-use agent based and computational models for study of social and ecological systems. Develops and maintains CoMSES Model Library, digital repository that supports discovery and good practices for software citation, digital preservation, reproducibility, and reuse. | Develop, share, reuse, computational, model, social, ecological, system, network, repository, citation, digital, preservation, reproducibility, archive | is listed by: DataCite | Restricted | DOI:10.25937 | https://doi.org/10.25937/, https://dx.doi.org/10.25937/ | SCR_017598 | Network for Computational Modeling in Social and Ecological Sciences | 2026-08-29 11:28:53 | 6 | |||||||
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Chinese National Compound Library Resource Report Resource Website 1+ mentions |
Chinese National Compound Library (RRID:SCR_018723) | CNCL | data or information resource, organization portal, portal | Library with storage capacity of over million compounds possessing diversified structures. Coupled with this library will be advanced sample handling, information management and quality control systems. As important material and information resource, CNCL will work with both domestic and international stakeholders to promote sustained development of Chinese pharmaceutical industry. | Library, compound library, compound, diversified structure, sample handling, information management, quality control, pharmaceutical industry | SCR_018723 | 2026-08-29 11:28:50 | 1 | |||||||||||
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refine.bio Resource Report Resource Website 1+ mentions |
refine.bio (RRID:SCR_017471) | data processing software, software application, software resource | Software tool to uniformly process and normalize large amounts of data. Harmonizes petabytes of publicly available biological data into ready-to-use datasets for cancer researchers and AI/ML scientists. | Process, normalize, large, amount, data, cancer, dataset, standardized, pipeline, gene, expression | Free, Available for download, Freely available | https://www.refine.bio/ | SCR_017471 | 2026-08-29 11:28:58 | 1 |
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The NIDDK Information Network (dkNET) serves the needs of basic and clinical investigators by providing seamless access to large pools of data and research resources relevant to the mission of The National Institute of Diabetes Digestive and Kidney Diseases (NIDDK). dkNET is hosted at University of California San Diego, and is supported by NIH NIDDK grant U24DK097771.
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