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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Aquaria COVID Resource Resource Report Resource Website |
Aquaria COVID Resource (RRID:SCR_021835) | data access protocol, software resource, web service | Web tool to visually summarise all available 3D structural information for all proteins comprising COVID-19 virus (SARS-CoV-2). Resource also gives access to structural models, generated by finding all sequence regions with detectable similarity to any currently published 3D structure. These structures are clustered into distinct states that provide insight into viral replication, mimicry, and hijacking. | 3D protein structural information, COVID-19, SARS-CoV-2, structural models | is related to: Aquaria | Free, Freely available | https://aquaria.ws/covid, https://aquaria.ws/covid#info | SCR_021835 | SciCrunch Registry | Aquaria-COVID Resource | 2026-10-10 12:41:58 | 0 | ||||||||
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Microns Explorer Resource Report Resource Website 10+ mentions |
Microns Explorer (RRID:SCR_021678) | data or information resource, portal, topical portal | Portal to release connectivity and functional imaging data collected by consortium of laboratories led by groups at Allen Institute for Brain Science, Princeton University, and Baylor College of Medicine, with support from broad array of teams, coordinated and funded by IARPA MICrONS program. Data include large scale electron microscopy based reconstructions of cortical circuitry from mouse visual cortex, with corresponding functional imaging data from those same neurons. | Connectome, mouse, cortex, electron microscopy, functional imaging data, cortical circuitry reconstruction, neuron |
is related to: Allen Institute for Brain Science is related to: Princeton University; New Jersey; USA is related to: Baylor College of Medicine; Houston; Texas |
IARPA MICrONS | Free, Freely available | SCR_021678 | SciCrunch Registry | MICrONS Explorer | 2026-10-10 12:41:37 | 19 | ||||||||
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NanoString: nCounter Analysis System Resource Report Resource Website 10+ mentions |
NanoString: nCounter Analysis System (RRID:SCR_021712) | nCounter | instrument resource | System includes hardware and software. Options include nCounter SPRINT,nCounter MAX or nCounter FLEX. Platform used for multiplex analysis of up to 800 RNA, DNA, or protein targets. System can be combined with GeoMx Digital Spatial Profiler (DSP) to enable high-plex, spatially-resolved RNA, and protein quantification. | Multiplex analysis, RNA analysis, DNA analysis, Protein analysis, NanoString Differential Expression, NanoString, analysis system, instrument, equipment, USEDit, ABRF | is listed by: USEDit | Commercially available | SCR_021712 | SciCrunch Registry | nCounter Analysis System, Bruker nCounter Analysis System | 2026-10-10 12:41:32 | 36 | ||||||||
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StimGen Resource Report Resource Website 1+ mentions |
StimGen (RRID:SCR_021676) | data processing software, data visualization software, software application, software resource | Software tool as interface for designing and presenting visual stimuli. | Retina, Visual Stimulation, Design, Presentation | SCR_021676 | SciCrunch Registry | 2026-10-10 12:41:28 | 3 | ||||||||||||
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YAML Resource Report Resource Website 10+ mentions |
YAML (RRID:SCR_021710) | software resource | YAML is a human friendly data serialization language for all programming languages. Unicode based data serialization language designed around common native data types of agile programming languages. Useful for programming needs ranging from configuration files to Internet messaging to object persistence to data auditing. | Data serialization language, common native data types, agile programming languages, configuration files, Internet messaging, object persistence, data auditing | Free, Freely available | https://yaml.org/spec/1.2.1/ | SCR_021710 | SciCrunch Registry | YAML 1.2 | 2026-10-10 12:41:57 | 23 | |||||||||
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TriKinetics: Drosophila Activity Monitoring System Resource Report Resource Website 10+ mentions |
TriKinetics: Drosophila Activity Monitoring System (RRID:SCR_021798) | instrument resource | System from TriKinetics for monitoring Drosophila activity. Includes hardware and DAMSystem3 Software for data acquision and DAMFileScan Software for scanning data for errors. Applied to behavioral activity experiments, including sleep deprivation analyses and general studies of hypoactivity and hyperactivity. | monitoring Drosophila activity, behavioral activity experiment, behavioral activity, activity monitoring |
is related to: TriKinetics DAMSystem3 Software is related to: Trikinetics DAM FileScan |
DOI:10.1101/pdb.prot5518 | Restricted | SCR_021798 | SciCrunch Registry | Drosophila Activity Monitoring System, DAM, DAM System, Drosophila Activity Monitor | 2026-10-10 12:41:58 | 13 | ||||||||
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PyCaret Resource Report Resource Website 50+ mentions |
PyCaret (RRID:SCR_021695) | software library, software resource, software toolkit | Open source, low code machine learning library in Python that allows you to go from preparing your data to deploying your model within minutes in your choice of notebook environment. | Machine learning library, Python | Free, Available for download, Freely available | https://github.com/pycaret/pycaret | SCR_021695 | SciCrunch Registry | PyCaret 2.3 | 2026-10-10 12:41:31 | 67 | |||||||||
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ZEN-ZEISS Efficient Navigation Resource Report Resource Website 100+ mentions |
ZEN-ZEISS Efficient Navigation (RRID:SCR_021725) | ZEN | data acquisition software, data processing software, data visualization software, image processing software, software application, software resource | Software package for ZEISS light microscopy systems. Universal user interface for every imaging system from ZEISS to assist to acquire images, process images, visualize big data by GPU powered 3D engine, analyze images via Machine Learning-based tools, correlate between light-light or light-electron microscopes, store raw data in secure format locally or in the cloud., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025. | ZEISS light microscopy, ZEISS, imaging | THIS RESOURCE IS NO LONGER IN SERVICE | SCR_021725 | SciCrunch Registry | ZEN2010 B SP1 software, ZEISS Efficient Navigation, ZEN - ZEISS Efficient Navigation | 2026-10-10 12:41:39 | 145 | |||||||||
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MutaRNA Resource Report Resource Website 1+ mentions |
MutaRNA (RRID:SCR_021723) | analysis service resource, data access protocol, production service resource, service resource, software resource, web service | Web server predicts and visualizes mutation induced structure changes of single nucleotide polymorphism in RNA sequence. This covers changes in accessibility (single strandedness) of molecule, its intra molecular base pairing potential and its base pairing probabilities. One of Freiburg RNA tools. | Mutation induced structure changes, single nucleotide polymorphism, RNA sequence | has parent organization: University of Freiburg; Baden-Wurttemberg; Germany | Baden-Wuerttemberg Ministry of Science ; Research and Art ; German Research Foundation ; Germany Excellence Strategy ; University of Freiburg |
PMID:32392303 | Free, Freely available | SCR_021723 | SciCrunch Registry | Mutational Analysis of RNAs | 2026-10-10 12:41:32 | 2 | |||||||
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DiPer Resource Report Resource Website 1+ mentions |
DiPer (RRID:SCR_021720) | data analysis software, data processing software, software application, software resource | Software tool calculates direction autocorrelation, plots and calculates other essential parameters to analyze cell migration in two dimensions: it displays cell trajectories individually and collectively, and it calculates average speed and mean square displacements (MSDs) to assess the area explored by cells over time. | calculates direction autocorrelation, analyze cell migration, displays cell trajectories, calculates average speed and mean square displacements | SCR_021720 | SciCrunch Registry | 2026-10-10 12:41:28 | 3 | ||||||||||||
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NIH NCI list of FDA approved cancer drugs Resource Report Resource Website 10+ mentions |
NIH NCI list of FDA approved cancer drugs (RRID:SCR_021841) | data or information resource, disease-related portal, portal, topical portal | Portal to find consumer friendly information about drugs for cancer and conditions related to cancer. The list is in alphabetical order by generic name and brand name. | drugs for cancer, conditions related to cancer, alphabetical order, generic name, brand name | cancer | Free, Available for download, Freely available | SCR_021841 | SciCrunch Registry | 2026-10-10 12:41:33 | 16 | ||||||||||
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VAMPIRE Resource Report Resource Website 1+ mentions |
VAMPIRE (RRID:SCR_021721) | data analysis software, data processing software, image analysis software, software application, software resource | Software tool for analysis of cell and nuclear morphology from fluorescence or bright field images. Enables profiling and classification of cells into shape modes based on equidistant points along cell and nuclear contours. Robust method to quantify cell morphological heterogeneity. | cell morphology analysis, nuclear morphology analysis, fluorescence images, bright field images | NCI R01 CA174388; NCI U54 CA143868; NIA P30 AG021334; NIA U01 AG060903 |
DOI:10.1038/s41596-020-00432-x | Free, Available for download, Freely available | SCR_021721 | SciCrunch Registry | Visually Aided Morpho-Phenotyping Image Recognition | 2026-10-10 12:41:38 | 2 | ||||||||
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SARS-CoV-2 network analysis Resource Report Resource Website 1+ mentions |
SARS-CoV-2 network analysis (RRID:SCR_021811) | 1d time-series analysis software, data analysis software, data processing software, network analysis software, software application, software resource, time-series analysis software | Software tool to predict human proteins that interact with SARS-CoV-2 proteins and trace provenance of predictions. | network propagation; interpretable machine learning; provenance tracing; SARS-CoV-2; COVID-19; virus-host protein interaction networks | Free, Available for download, Freely available | SCR_021811 | SciCrunch Registry | SARS-CoV-2-network-analysis, SARS-CoV-2 Protein Interaction Network Analysis | 2026-10-10 12:41:40 | 1 | ||||||||||
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TractionsForAll Resource Report Resource Website 1+ mentions |
TractionsForAll (RRID:SCR_021819) | data analysis software, data processing software, software application, software resource | Software tool to calculate 2D tractions exerted by adherent cell on its substrate. Used in field of mechanobiology to study contractile responses of variety of cell types. | Traction force analysis, 2D tractions, adherent cell, mechanobiology, cell contractile responses | uses: MATLAB | Free, Freely available | SCR_021819 | SciCrunch Registry | 2026-10-10 12:41:30 | 2 | ||||||||||
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Trikinetics DAM FileScan Resource Report Resource Website 1+ mentions |
Trikinetics DAM FileScan (RRID:SCR_021817) | software resource | Software tool used in Drosophila Activity Monitor system to scann data for errors. Also allows user to extract data from monitor files and bin data in different lengths. | scann data for errors, Drosophila Activity Monitor system, extract data | is related to: TriKinetics: Drosophila Activity Monitoring System | SCR_021817 | SciCrunch Registry | DAM FileScan | 2026-10-10 12:41:33 | 1 | ||||||||||
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NHP pycortex Resource Report Resource Website 1+ mentions |
NHP pycortex (RRID:SCR_021815) | data processing software, data visualization software, software application, software resource | Software tool as adaptation for NHP brains and pipelines. Pycortex python based toolkit for surface visualization of fMRI data. | fMRI data, surface visualization | has parent organization: Royal Netherlands Academy of Arts and Sciences; Amsterdam; Netherlands | Free, Available for download, Freely available | SCR_021815 | SciCrunch Registry | NHP-pycortex | 2026-10-10 12:41:58 | 1 | |||||||||
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eQTL Catalogue Resource Report Resource Website 50+ mentions |
eQTL Catalogue (RRID:SCR_021700) | catalog, data or information resource, database | Catalog provides uniformly processed gene expression and splicing QTLs from all available public studies on human. Expression and splicing QTLs recomputed from public datasets. | Gene expression, splicing QTLs, public datasets, human data, public studies | is related to: Open Targets Genetics Portal | DOI:10.1101/2020.01.29.924266 | Free, Freely available | SCR_021700 | SciCrunch Registry | 2026-10-10 12:41:31 | 59 | |||||||||
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SqueezeMeta Resource Report Resource Website 10+ mentions |
SqueezeMeta (RRID:SCR_021821) | data analysis software, data processing software, software application, software resource | Software tool as fully automated pipeline for metagenomic analysis. Used for metagenomics covering all steps of analysis. Features several characteristics including co-assembly procedure or co-assembly of unlimited number of metagenomes via merging of individual assembled metagenomes, both with read mapping for estimation of abundances of genes in each metagenome. Includes binning and bin checking for retrieving individual genomes. | automated metagenomics pipeline, metagenomics analysis steps, metagenomic analysis | Spanish Ministry of Economy and Competitiveness. | DOI:10.3389/fmicb.2018.03349 | Free, Available for download, Freely available | SCR_021821 | SciCrunch Registry | 2026-10-10 12:41:40 | 20 | |||||||||
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Bayesian Analysis of Single Cell Sequencing Resource Report Resource Website 1+ mentions |
Bayesian Analysis of Single Cell Sequencing (RRID:SCR_021829) | data analysis software, data processing software, software application, software resource | Software tool for Bayesian analysis of single cell sequencing data. Used to perform statistical analyses of single cell RNA sequencing datasets in context of supervised experiments. | Bayesian analysis, single cell sequencing data, single cell RNA sequencing datasets, statistical analyses, supervised experiments | PMID:26107944 | Free, Available for download, Freely available | https://github.com/catavallejos/BASiCS | SCR_021829 | SciCrunch Registry | BASiCS, Bayesian Analysis of Single-Cell Sequencing data | 2026-10-10 12:41:58 | 2 | ||||||||
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Max Planck Institute for Psycholinguistics; Nijmegen; Netherlands Resource Report Resource Website 1+ mentions |
Max Planck Institute for Psycholinguistics; Nijmegen; Netherlands (RRID:SCR_021706) | institution | Institute is entirely devoted to psycholinguistics – the study of how we produce and understand language, and how we acquire these skills as first or second language learners. The only institution in the world entirely dedicated to psycholinguistics, and is also one of only three among total of 90 within the Max Planck Society to be located outside Germany. |
has parent organization: Max-Planck-Gesellschaft is parent organization of: ELAN |
SCR_021706 | SciCrunch Registry | 2026-10-10 12:41:56 | 1 |
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The NIDDK Information Network (dkNET) serves the needs of basic and clinical investigators by providing seamless access to large pools of data and research resources relevant to the mission of The National Institute of Diabetes Digestive and Kidney Diseases (NIDDK). dkNET is hosted at University of California San Diego, and is supported by NIH NIDDK grant U24DK097771.
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