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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Oak Ridge National Laboratory Resource Report Resource Website 10+ mentions |
Oak Ridge National Laboratory (RRID:SCR_011475) | ORNL | data or information resource, organization portal, portal | A multiprogram science and technology laboratory managed for the U.S. Department of Energy by UT-Battelle, LLC, to deliver scientific discoveries and technical breakthroughs that will accelerate the development and deployment of solutions in clean energy and global security, and in doing so create economic opportunity for the nation. Scientists and engineers at ORNL conduct basic and applied research and development to create scientific knowledge and technological solutions that increase the availability of clean, abundant energy and restore and protect the environment; and contribute to national security. ORNL also performs other work for the Department of Energy, including isotope production, information management, and technical program management, and provides research and technical assistance to other organizations. | multiprogram, department of energy, clean energy, global security |
is related to: ScienceExchange is parent organization of: AdaptiveCrawler is parent organization of: Computational Biology at ORNL is parent organization of: ORNL DAAC Data Product Citation Policy is parent organization of: Carbon Dioxide Information Analysis Center is parent organization of: Prodigal |
Available to the research community | Wikidata: Q714439, grid.135519.a, nlx_149160, Crossref funder ID: 100006228, ISNI: 0000 0004 0446 2659 | https://ror.org/01qz5mb56 | SCR_011475 | Clinton Laboratories | 2026-08-29 11:28:47 | 13 | ||||||
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AutoSeg Resource Report Resource Website 10+ mentions |
AutoSeg (RRID:SCR_009438) | AutoSeg | data processing software, image analysis software, software application, software resource | A novel C++ based application developped at UNC-Chapel Hill that performs automatic brain tissue classification and structural segmentation. AutoSeg is designed for use with human and non-human primate pediatric, adolescent and adult data. AutoSeg uses a BatchMake pipeline script that includes the main steps of the framework entailing N4 bias field correction, rigid registration to a common coordinate image, tissue segmentation, skull-stripping, intensity rescaling, atlas-based registration, subcortical segmentation and lobar parcellation, regional cortical thickness and intensity statistics. AutoSeg allows efficient batch processing and grid computing to process large datasets and provides quality control visualizations via Slicer3 MRML scenes. | analyze, c++, expectation minimization, image-to-image, image-to-template, labeling, linux, macos, microsoft, magnetic resonance, nonlinear warp, nrrd, posix/unix-like, region of interest, registration, resampling, segmentation, spatial transformation, spline interpolation, volumetric analysis, warping, win32 (ms windows), windows, workflow, pediatric, adolescent, adult, young |
is used by: UNC-Wisconsin Neurodevelopment Rhesus MRI Database is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) has parent organization: University of North Carolina at Chapel Hill; North Carolina; USA |
BSD License | nlx_155582 | SCR_009438 | 2026-08-29 11:28:52 | 24 | ||||||||
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BXH/XCEDE Tools Resource Report Resource Website 1+ mentions |
BXH/XCEDE Tools (RRID:SCR_009439) | BXH/XCEDE Tools | data processing software, image analysis software, software application, software resource | A collection of data processing and image analysis tools for data in BXH or XCEDE format. This includes data format encapsulation/conversion, event-related analysis, QA tools, and more. These tools form the basis of the fBIRN QA procedures and are also distributed as part of the fBIRN Data Upload Scripts. | analyze, c, c++, console (text based), dicom, format conversion, linux, macos, mgh/mgz, microsoft, minc, magnetic resonance, nifti, perl, posix/unix-like, quantification, sh/bash, statistical operation, unix shell, windows |
is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) has parent organization: Function BIRN |
BIRN License | nlx_155583 | SCR_009439 | 2026-08-29 11:28:40 | 4 | ||||||||
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Science and Cognition Organization Resource Report Resource Website |
Science and Cognition Organization (RRID:SCR_009436) | Ciencias e Cognicao, Science and Cognition | data or information resource, organization portal, portal | Portal for scientific dissemination, teaching and interdisciplinary research that includes the integration of the sciences of mind, brain and education in Brazil. The contents are in Portuguese. English version coming soon. | neuroscience, portuguese | has parent organization: Federal University of Rio de Janeiro; Rio de Janeiro; Brazil | nlx_155564 | SCR_009436 | Ci��ncias e Cogni����o | 2026-08-29 11:28:40 | 0 | ||||||||
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DSI Studio Resource Report Resource Website 500+ mentions |
DSI Studio (RRID:SCR_009557) | DSI Studio | data processing software, image analysis software, software application, software resource | A software for diffusion MR images analysis. The provided functions include reconstruction (DTI, QBI, DSI, and GQI), deterministic fiber tracking, and 3D visualization. It has a window-based interface and operates on Microsoft Windows system. | analyze, c++, console (text based), dicom, diffusion mr fiber tracking, diffusion spectrum, fiber tracking, image reconstruction, linux, microsoft, modeling, magnetic resonance, nifti, posix/unix-like, q-ball, quantification, super tensor, tensor metric, tractography, visualization, win32 (ms windows), windows, coregistration, analysis |
is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) has parent organization: Carnegie Mellon University; Pennsylvania; USA |
BSD License | nlx_155737 | http://www.nitrc.org/projects/dsistudio | SCR_009557 | 2026-08-29 11:28:40 | 694 | |||||||
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cmrep Resource Report Resource Website |
cmrep (RRID:SCR_009434) | cmrep | data processing software, image analysis software, software application, software resource | A set of deformable modeling algorithms for shape analysis and structure-specific normalization. Applications of cm-reps include structure-specific fMRI analysis, DTI analysis, and structural brain mor | magnetic resonance | is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) | nlx_155535 | SCR_009434 | cm-reps, continuous medial representation | 2026-08-29 11:28:52 | 0 | ||||||||
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BCube A Broker Framework for Next Generation Geoscience Resource Report Resource Website |
BCube A Broker Framework for Next Generation Geoscience (RRID:SCR_012765) | BCube | data or information resource, portal | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on October 17,2023. Project that brings together an internationally recognized team of geo- and social-scientists, cyberinfrastructure experts and educators to explore how expert systems can mediate interactions and improve access between scientific fields. To address complex Earth system issues such as climate change and water resources, geoscientists must work across disciplinary boundaries, which requires them to access data outside of their fields. The initial focus is on hydrology, oceans, polar and weather, with the intent to make the technology applicable and available to all the geosciences. The team''s social scientists and educators will research how technology can improve knowledge exchange between scientific communities. | usgin:non-geographic, hydrology, oceans, polar, weather, geoscience |
is listed by: CINERGI has parent organization: University of Colorado; Colorado; USA |
NSF Earthcube Building Block | THIS RESOURCE IS NO LONGER IN SERVICE | rid_000030 | SCR_012765 | 2026-08-29 11:28:54 | 0 | |||||||
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DPABI Resource Report Resource Website 1000+ mentions |
DPABI (RRID:SCR_010501) | DPABI | data processing software, software application, software resource, software toolkit | Software toolbox for data processing and analysis of brain imaging, evolved from DPARSF (Data Processing Assistant for Resting-State fMRI). | neuroimaging, resting-state fmri, brain, analysis, fmri |
uses: DPARSF has parent organization: RFMRI.ORG |
GNU General Public License | nlx_158469 | SCR_010501 | DPABI: a toolbox for Data Processing & Analysis of Brain Imaging, toolbox for Data Processing and Analysis of Brain Imaging | 2026-08-29 11:28:41 | 1384 | |||||||
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Biobanc USA Resource Report Resource Website |
Biobanc USA (RRID:SCR_010622) | BiobancUSA.PNG | biomaterial supply resource, cell repository, material resource | BioBancUSA is a leading biotechnology company specializing in white blood cell collection, processing, cryopreservation and storage service. BioBancUSA, a private company headquartered in Monterey, California, is the exclusive licensee of the original patent for the collection, processing and cryopreservation technology of white blood cells, giving you the assurance of both technical integrity and legal legitimacy that you can count on. BioBancUSA is dedicated to providing our clients with the highest quality immune cell preservation for their future medical use. We are committed to the most advanced technology, exceptional, personalized service and leading-edge innovation to benefit our customers, health care providers, shareholders and employees. | is listed by: One Mind Biospecimen Bank Listing | nlx_56364 | SCR_010622 | 2026-08-29 11:28:53 | 0 | ||||||||||
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Rutgers Cell and DNA Repository Resource Report Resource Website 10+ mentions |
Rutgers Cell and DNA Repository (RRID:SCR_010624) | RUCDR | biomaterial supply resource, cell repository, material resource | RUCDR is a biobank and a service organization that maintains human blood, serum, saliva, tissue and the genetic products derived from those. Services include technical consultation and logistical support for biobanking. Researchers can order biomaterials and apply for phenotypic / genotypic data. | genetics, disease, phenotypic data, genotypic data, cell, dna, blood, cell line |
is listed by: One Mind Biospecimen Bank Listing is related to: NIMH Repository and Genomics Resources has parent organization: Rutgers University; New Jersey; USA is parent organization of: NIMH Stem Cell Center |
Researchers can order biomaterials and apply for phenotypic / genotypic data, Depending on the project. | nlx_60990 | SCR_010624 | Rutgers Cell DNA Repository, Rutgers University Cell DNA Repository | 2026-08-29 11:28:41 | 37 | |||||||
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BrainSlices Resource Report Resource Website |
BrainSlices (RRID:SCR_010504) | BS | data repository, image repository, service resource, storage service resource | BrainSlices is a repository of annotated high-resolution images of brain tissue. | has parent organization: Nencki Institute of Experimental Biology; Warsaw; Poland | Polish Ministry of Science and Higher Education POIG.02.03.00-00-003/09 | nlx_158569 | SCR_010504 | 2026-08-29 11:28:53 | 0 | |||||||||
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Hunt Biobank Resource Report Resource Website 50+ mentions |
Hunt Biobank (RRID:SCR_010626) | HUNT Biobank | biomaterial supply resource, cell repository, material resource | International biobank storing whole blood and DNA from 200,000 individuals, serum and plasma samples from more than 100,000 individuals as well as urine, RNA tubes, cells, buffy coat and Na-heparin tubes for environmental analysis for as many as 50,000 individuals. All bio-specimens from the HUNT surveys are collected, processed and stored at the HUNT Biobank in Levanger. The National CONOR Biobank is located on the same site, where it serves as a central research repository for DNA samples from all the largest Norwegian health surveys. These make up the Cohorts of Norway (CONOR), which include samples from more than 200,000 individuals. * HUNT 1 was carried out in 1984-1986 to establish the health history of 75,000 people. * HUNT 2, carried out in 1995-1997, focused on the evolution of the health history of 74,000 people. This included blood sample collection from 65,000 people. The data that accompany biospecimens in the biobank are stored in secured computer systems that run complex database management and analysis software. * HUNT 3 was completed in June 2008. 93,210 people were invited to participate in the study, and as of the 6th of June, 2008, 48,289 people participated (52% participation rate). The data, collected by means of questionnaires, interviews, clinical examinations and collection of blood and urine samples, will be ready for analysis in January 2009. * Young-HUNT is the adolescent part of HUNT including participants aged 13-19 years. Young-HUNT1 (1995-97) was conducted as part of HUNT2, 9141 adolescents participated (90% response rate). Young-HUNT2 (2000-01) was a follow-up study of Young-HUNT1, 2400 students participated in both studies (77% of the invited). Young-HUNT3 (2006-08) was a new cross-sectional study as part of HUNT3. This time 8677 adolescents participated (87% response rate). Data collection included self-reported questionnaires, structured interviews, clinical measurements and, in Young-HUNT3, buccal smears. All institutions with research expertise can apply for access to analyze HUNT data. Projects must have recommendations from The Regional Committee for Medical Research in Norway (REK) and be registered with The Norwegian Social Science Data Services (NSD). | longitudinal study, population, health, environment, whole blood, dna, serum, plasma, urine, rna, cell, buffy coat, na-heparin, blood, medical history, family medical history, adolescent, self-reported questionnaire, structured interview, clinical measurement, buccal smear, analysis, adult, adolescent, aging, FASEB list |
is listed by: One Mind Biospecimen Bank Listing has parent organization: Norwegian University of Science and Technology; Trondheim; Norway |
nlx_57833 | http://www.huntbiosciences.com/default.asp?Valgt=Ja&Mode=Meny&MenyID=41&HovedMenyID=41&Hovedmeny=HUNT+Biobank | SCR_010626 | Nord-Tr��������ndelag health study Biobank, Nord-Trondelag health study, HUNT Databank | 2026-08-29 11:28:46 | 50 | |||||||
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Mayo Mitochondrial Disease Biobank Resource Report Resource Website |
Mayo Mitochondrial Disease Biobank (RRID:SCR_010598) | Mitochondrial Biobank | biomaterial supply resource, cell repository, material resource | A biobank of blood and tissue samples from patients with known and suspected mitochondrial diseases along with data from their families. Samples are used in research to understand the family of mitochondrial disorders such as Alpers' syndrome, encephalopathy, and Friedrieich's ataxia, among many others. The goal of the biobank is to advance the understanding of mitochondrial disease and improve patient care. | blood, tissue, mitochondrial disease, mitochrondrial disorder, alper's progressive sclerosing polio dystrophy, leber hereditary optic neuroretinopathy, barth syndrome, leigh syndrome, leigh-like syndrome, chronic progressive external ophthalmoplegia, mitochondrial myopathy, encephalopathy, lactic acidosis, stroke-like episodes, melas, dominant optic atrophy, myoclonic epilepsy associated with ragged-red fibers, merrf, merrf syndrome, friedreich's ataxia, neuropathy ataxia, retinitis pigmentosa, narp, hereditary paragangliom, pearson syndrome, hereditary spastic paraplegia, wolfram syndrome, kearns-sayre syndrome, research, biobank, treatment, patient care |
is listed by: One Mind Biospecimen Bank Listing has parent organization: Mayo Clinic Minnesota; Minnesota; USA |
Mitochondrial disease, Mitochrondrial disorder, Alper's progressive sclerosing poliodystrophy, Leber hereditary optic neuroretinopathy, Barth syndrome, Leigh syndrome, Leigh-like Syndrome, Chronic progressive exteRNAl ophthalmoplegia, Mitochondrial myopathy, Encephalopathy, Lactic acidosis, Stroke-like episodes, MELAS, Dominant optic atrophy, Myoclonic epilepsy associated with ragged-red fibers, MERRF Syndrome, Friedreich's Ataxia, Neuropathy ataxia and retinitis pigmentosa, Hereditary paragangliom, Pearson syndrome, Hereditary spastic paraplegia, Wolfram syndrome, Kearns-Sayre syndrome | Available to the research community, Application and review process | nlx_49318 | SCR_010598 | Mayo Clinic Mitochondrial Disease Biobank, Mitochondrial Disease Biobank | 2026-08-29 11:28:53 | 0 | ||||||
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ERP PCA Toolkit Resource Report Resource Website 1+ mentions |
ERP PCA Toolkit (RRID:SCR_013105) | ERP PCA Toolkit | data processing software, software application, software resource, software toolkit | This Matlab toolkit is a general purpose tool for editing, visualizing, and analyzing EEG data (both Event Related Potential - ERP and spectral) whose most recent version has been downloaded over 1000 times. Its three chief highlights are: 1) an optimized automatic artifact correction function that includes ICA correction for eye blinks and saccades. 2) Extensive support for easily conducting PCA and ICA through all stages of the procedure, including inspection of reconstituted waveforms and batch ANOVAs. 3) Implementation of robust ANOVAs, including McCarthy-Wood vector test. It has a graphical user interface for point and click usage and comes with an extensive illustrated tutorial. A description of the toolkit was published in Dien (2010) in Journal of Neuroscience Methods. It relies on both internal functions as well as borrowed functions from both EEGlab and FieldTrip. | eeg, meg, electrocorticography, matlab, visualization | is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) | GNU General Public License v2 | nlx_155753 | http://www.nitrc.org/projects/erppcatoolkit | SCR_013105 | 2026-08-29 11:28:54 | 6 | |||||||
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University of Miami Labs and Facilities Resource Report Resource Website |
University of Miami Labs and Facilities (RRID:SCR_010996) | UM Labs and Facilities, UM Labs & Facilities | data or information resource, organization portal, portal | Number of core facilities and shared resources developed at University of Miami are available to researchers and trainees. These resources allow centralized access to specialized equipment and services, providing cutting edge technologies, reagents, and special products needed to conduct high quality, interdisciplinary research in cost effective way. |
is listed by: ScienceExchange is related to: University of Miami Stable Isotope Laboratory Core Facillity is related to: UM Sylvester Comprehensive Cancer Center Labs and Facilities has parent organization: University of Miami; Florida; USA |
SciEx_925 | http://www.scienceexchange.com/facilities/university-of-miami | SCR_010996 | University of Miami Labs & Facilities | 2026-08-29 11:28:41 | 0 | ||||||||
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National Centers for Biomedical Computing Resource Report Resource Website 1+ mentions |
National Centers for Biomedical Computing (RRID:SCR_010635) | NCBC | data or information resource, organization portal, portal | The NCBCs are a set of networked computation core facilities for biomedical infrastructure funded under the NIH Common Fund, the National Program of Excellence in Biomedical Computing (NPEBC). There are seven funded Centers that cover systems biology, image processing, biophysical modeling, biomedical ontologies, information integration, and tools for gene-phenotype and disease analysis. The centers will create innovative software programs and other tools that enable the biomedical community to integrate, analyze, model, simulate, and share data on human health and disease. Each Center has Cores that are focused on (1) computational science, (2) biomedical computational science and (3) driving biological projects whose intent is to drive the interaction between computational and biomedical computational science. In addition to the Centers, the NIH has a number of active program announcements to develop collaborations with the biomedical research community��this includes announcements from the Biomedical Information Science and Technology Initiative (BISTI) and the Program for Collaborations with National Centers for Biomedical Computing. There are numerous efforts in education and training that emanate from the Centers and there is an annual all hands meeting. | nih (common fund) |
is related to: iDASH is related to: iTools is related to: Center for Computational Biology at UCLA is related to: i2b2 Research Data Warehouse is related to: Informatics for Integrating Biology and the Bedside is related to: National Alliance for Medical Image Computing is related to: Simbios is related to: National Center for Biomedical Ontology is related to: National Center for Integrative Biomedical Informatics is related to: MAGNet - Multiscale Analysis of Genomic and Cellular Networks is related to: iDASH has parent organization: National Institutes of Health is parent organization of: Biositemaps is parent organization of: National Center for Biomedical Ontology is parent organization of: Biomedical Resource Ontology is parent organization of: National Alliance for Medical Image Computing is parent organization of: NCBO Annotator |
NIH | nlx_62048 | SCR_010635 | NIH Roadmap National Centers for Biomedical Computing | 2026-08-29 11:28:53 | 1 | |||||||
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GSA-SNP Resource Report Resource Website 10+ mentions |
GSA-SNP (RRID:SCR_013109) | GSA-SNP | data processing software, software application, software resource | A tool for the gene-set (or pathway) analysis of a genome-wide association study result. It accepts a genome-wide list of SNPs and their association P-values. It summarizes the SNP P-values into nearby genes. The gene-by-gene summary results are then further summarized by gene-sets such as Gene Ontology, KEGG pathways, or user-created gene-sets. Various standardization and statistical tests can be performed and the resulting gene-sets that pass a significance level after multiple-testing correction are reported. The tool is written in Java and is available as a standalone version. | clinical neuroinformatics, computational neuroscience, imaging genomics, bio.tools |
is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) is listed by: Debian is listed by: bio.tools has parent organization: Soongsil University; Seoul; South Korea |
PMID:20501604 | GNU General Public License v2 | nlx_155765, biotools:gsa-snp | https://bio.tools/gsa-snp | SCR_013109 | 2026-08-29 11:28:47 | 18 | ||||||
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PrabiG Resource Report Resource Website |
PrabiG (RRID:SCR_010636) | data or information resource, organization portal, portal | PrabiG is the Grenoble portal of the Prabi (Rhone-Alpes Bioinformatics Center) platform. It aims at providing the scientific community with tools and data related to proteomics and metabolomics. PrabiG is currently hosting the following projects : * UniPathway * ProteHome * OBIWarehouse * AT_Chloro |
has parent organization: PRABI is parent organization of: UniPathway is parent organization of: OBIWarehouse |
nlx_62118 | SCR_010636 | Prabi Grenoble | 2026-08-29 11:28:41 | 0 | ||||||||||
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Trim Galore Resource Report Resource Website 5000+ mentions Rating or validation data |
Trim Galore (RRID:SCR_011847) | Trim Galore! | data processing software, software application, software resource | Software tool to automate quality and adapter trimming as well as quality control, with some added functionality to remove biased methylation positions for RRBS sequence files for directional, non-directional or paired-end sequencing. Wrapper around Cutadapt and FastQC to consistently apply adapter and quality trimming to FastQ files, with extra functionality for Reduced Representation Bisulfite Sequencing data. | Automate, quality, adapter, trimming, remove, biased, methylation, position, RRBS, reduced, representation, bisulfite, data, sequence, wrapper, bio.tools |
is listed by: OMICtools is listed by: bio.tools is listed by: Debian has parent organization: Babraham Institute works with: cutadapt |
Free, Available for download, Freely available | biotools:trim_galore, OMICS_01096, SCR_016946 | https://github.com/FelixKrueger/TrimGalore, https://bio.tools/trim_galore, https://sources.debian.org/src/trim-galore/ | SCR_011847 | TrimGalore | 2026-08-29 11:28:41 | 7582 | ||||||
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AidData Resource Report Resource Website 10+ mentions |
AidData (RRID:SCR_010480) | AidData | data or information resource, database, portal | Portal of information about international economic development assistance, dating back to 1947, that includes a database of nearly one million past and present aid activities around the world, aid information management services and tools, data visualization technologies, and research designed to increase understanding of development finance. AidData is searchable by topic such as disaster prevention, energy supply, water supply or reconstruction relief. You may also search by specific regions including Africa, Europe, America, Asia, or Oceania. | economic assistance, economic development, economic, development | is listed by: re3data.org | Acknowledgement requested, The community can contribute to this resource | nlx_157754, r3d100010841 | SCR_010480 | AidData - Open Data for International Development | 2026-08-29 11:28:40 | 24 |
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