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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Multiple Sclerosis Research Australia Brain Bank Resource Report Resource Website |
Multiple Sclerosis Research Australia Brain Bank (RRID:SCR_010747) | MS Research Australia Brain Bank | biomaterial supply resource, material resource, tissue bank | Biomaterial supply resource which provides high quality and well-chracaterized brain tissue samples for MS research. Registered MS brain donors and their families are kept up to date on the latest progress in MS research. | biomaterial supply resource, brain, brain tissue, brain bank, MS, multiple sclerosis | is listed by: Multiple Sclerosis Discovery Forum | Multiple Sclerosis | Collier Charitable Fund ; MS Research Australia ; NSW Government Office for Science and Medical Research ; Trish MS Research Foundation ; University of Sydney |
Free, Freely available | SCR_013840, nlx_99028 | SCR_010747 | 2026-08-29 11:30:24 | 0 | ||||||
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Clinical Psychology and Psychiatry: A Closer Look Resource Report Resource Website |
Clinical Psychology and Psychiatry: A Closer Look (RRID:SCR_010591) | blog, data or information resource, narrative resource | Clinical Psychology and Psychiatry: A Closer Look Psychiatric medications, science, marketing, psychiatry in general, and occasionally clinical psychology. Questioning the role of key opinion leaders and the use of science to promote commercial ends rather than the needs of people with mental health concerns. | nlx_48889 | SCR_010591 | Clinical Psychology and Psychiatry: A Closer Look | 2026-08-29 11:30:23 | 0 | |||||||||||
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Marbank - National Marine BioBank Resource Report Resource Website |
Marbank - National Marine BioBank (RRID:SCR_010592) | biomaterial supply resource, material resource, tissue bank | Not yet vetted by NIF curator | nlx_49050 | SCR_010592 | 2026-08-29 11:30:05 | 0 | ||||||||||||
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GeneDB Spombe Resource Report Resource Website |
GeneDB Spombe (RRID:SCR_010639) | GeneDB_Spombe, GeneDB Spombe, GeneDB S. pombe | data or information resource, database | THIS RESOURCE IS NO LONGER IN SERVICE documented June 6, 2013 Database of all S. pombe (fission yeast) known and predicted protein coding genes, pseudogenes, transposons, tRNAs, rRNAs, snRNAs, snoRNAs and other known and predicted non-coding RNAs. Curation of new and existing literature is ongoing and changes are incorporated weekly. User feedback is welcome. The genome of fission yeast (Schizosaccharomyces pombe), which contains the smallest number of protein-coding genes yet recorded for a eukaryote: 4,824, has been sequenced and annotated. The centromeres are between 35 and 110 kilobases (kb) and contain related repeats including a highly conserved 1.8-kb element. Regions upstream of genes are longer than in budding yeast (Saccharomyces cerevisiae), possibly reflecting more-extended control regions. Some 43% of the genes contain introns, of which there are 4,730. Fifty genes have significant similarity with human disease genes; half of these are cancer related. We identify highly conserved genes important for eukaryotic cell organization including those required for the cytoskeleton, compartmentation, cell-cycle control, proteolysis, protein phosphorylation and RNA splicing. These genes may have originated with the appearance of eukaryotic life. Few similarly conserved genes that are important for multicellular organization were identified, suggesting that the transition from prokaryotes to eukaryotes required more new genes than did the transition from unicellular to multicellular organization. | fission yeast |
is related to: PomBase has parent organization: GeneDB |
Wellcome Trust | PMID:11859360 | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_62442 | SCR_010639 | Schizosaccharomyces pombe GeneDB, GDB S. pombe | 2026-08-29 11:30:36 | 0 | |||||
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University of Florida Molecular Tissue Bank Resource Report Resource Website |
University of Florida Molecular Tissue Bank (RRID:SCR_010599) | biomaterial supply resource, material resource, tissue bank | Tissue bank that handles human tissue. | nlx_49428 | http://www.pathology.ufl.edu/%7EMolecular/M_newindex.html | SCR_010599 | 2026-08-29 11:30:23 | 0 | |||||||||||
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MUW Biobank Resource Report Resource Website |
MUW Biobank (RRID:SCR_010632) | biomaterial supply resource, material resource, tissue bank | Not yet vetted by NIF curator | nlx_60522 | SCR_010632 | 2026-08-29 11:30:05 | 0 | ||||||||||||
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Tata Memorial Hospital Tissue Bank Resource Report Resource Website |
Tata Memorial Hospital Tissue Bank (RRID:SCR_010633) | biomaterial supply resource, material resource, tissue bank | Not yet vetted by NIF curator | nlx_66170 | https://tmc.gov.in/actrec/index.php/ | SCR_010633 | 2026-08-29 11:30:23 | 0 | |||||||||||
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DGIL Porcine Immunology and Nutrition Datebase Resource Report Resource Website 1+ mentions |
DGIL Porcine Immunology and Nutrition Datebase (RRID:SCR_012743) | data or information resource, database | Performs studies demonstrating the nutritional and biochemical effects of trace elements with special emphasis on chromium. Performs studies to elucidate the role of natural products in the improvement of the function of insulin with emphasis on polyphenols from tea and cinnamon. Performs studies on the role of dietary polyphenols on neuropathological changes including those associated with Alzheimers disease. The ultimate goal of the research is to prevent or alleviate early signs and symptoms of the metabolic syndrome which is important in the prevention of type 2 diabetes, cardiovascular, Alzheimers and related diseases. Our database is focused on immunologically-related genes classified under the following categories: Apoptosis CD markers Chemokines Chemokine receptors Cytokines Cytokine receptors Dendritic cell associated genes Type 1 IFN induced proteins Inflammation NFKB signaling pathway Toll receptor signaling pathway T cell activation TH1 cell development TH2 cell development Partners. Partnering with the Diet, Genomics, and Immunology Laboratory | has parent organization: U.S. Department of Agriculture | Type 2 diabetes, Diabetes, Cardiovasculat disease, Alzheimer's disease | nif-0000-30452 | SCR_012743 | PIN | 2026-08-29 11:30:25 | 8 | |||||||||
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FINDbase Worldwide Resource Report Resource Website 10+ mentions |
FINDbase Worldwide (RRID:SCR_012744) | data or information resource, database | FINDbase Worldwide is an online repository of information about the frequency of different mutations leading to inherited disorders in various populations around the globe. Frequency data about 32 disorders, 25 genes within 98 populations covering 1226 mutations is now available. 28 curators worldwide contributed to this database containing data from 37 submissions. | genetic disorder, human mutation, inherited disorder, mutation pathogenesis, bio.tools |
is listed by: bio.tools is listed by: Debian |
biotools:findbase, nif-0000-02838 | https://bio.tools/findbase | SCR_012744 | FINDbase | 2026-08-29 11:30:09 | 13 | ||||||||
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VIOLIN: Vaccine Investigation and Online Information Network Resource Report Resource Website 10+ mentions |
VIOLIN: Vaccine Investigation and Online Information Network (RRID:SCR_012749) | VIOLIN | data or information resource, database | A web-based central resource that integrates vaccine literature data mining, vaccine research data curation and storage, and curated vaccine data analysis for vaccines and vaccine candidates developed against various pathogens of high priority in public health and biological safety. The vaccine data includes research data from vaccine studies using humans, natural and laboratory animals.VIOLIN extracts and stores vaccine-related, peer-reviewed papers from PubMed. Several powerful literature searching and data mining programs have been developed. These include an advanced keywords search program, a natural languagae processing (NLP) based literature retrieval program, a MeSH-based literature browser, and a literature alert program. Registered users can subscribe to our email alert service and will be notified of any newly published vaccine papers in the areas of interest. These literature mining programs are designed to help the user and VIOLIN database curators to find efficiently needed vaccine articles and sentences within full-text articles that contain searched keywords or categories.A web-based literature mining and curation system (Limix) is available for registered users/curators to search, curate, and submit structured vaccine data into the VIOLIN database. The curated vaccine-related information contains many categories such as general pathogenesis, protective immunity, vaccine preparation and characteristics, host responses including vaccination protocol and efficacy against virulent pathogen infections. All data within the database is edited manually and is derived primarily from peer-reviewed publications. The curated data is stored in a relational database and can be queried using various VIOLIN search programs. Vaccine-related pathogen and host genes are annotated and available for searchs based on a customized BLAST program. All VIOLIN data are available for download into an XML-based data exchange format.VIOLIN is designed to be a vital source of vaccine information and will provide researchers in basic and clinical sciences with curated data and bioinformatics tools to facilitate understanding and development of vaccines to fight infectious diseases. Category: Other Molecular Biology Databases Subcategory: Drugs and drug design | immunology, infectious diseases, molecular biology, pathogen, public health, vaccine | has parent organization: University of Michigan; Ann Arbor; USA | NIAID U24 AI125008 | nif-0000-03629 | SCR_012749 | Violin 2.0, Vaccine Investigation and Online Information Network | 2026-08-29 11:30:25 | 27 | |||||||
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RegTransBase Resource Report Resource Website 1+ mentions |
RegTransBase (RRID:SCR_013047) | data or information resource, database | It consists of two modules - a database of regulatory interactions based on literature and an expertly curated database of transcription factor binding sites. The literature based information in RegTransBase is a manually curated database of regulatory interactions in prokaryotes, captures the knowledge in published scientific literature using a controlled vocabulary. RegTransBase describes a large number of regulatory interactions reported in many organisms and contains various types of experimental data, in particular: * the activation or repression of transcription by an identified direct regulator * determining the transcriptional regulatory function of a protein (or RNA) directly binding to DNA or RNA * mapping or prediction of binding sites for a regulatory protein * characterization of regulatory mutations The analysis section of RegtransBase is based on a set of manually curated alignments of transcription factor binding sites and allows you to search for new binding sites and verify conservation of bindings sites across multiple species through the use of web based analysis tools. | nif-0000-03398 | SCR_013047 | RegTransBase | 2026-08-29 11:30:26 | 6 | |||||||||||
|
GABI-KAT Resource Report Resource Website 50+ mentions |
GABI-KAT (RRID:SCR_012751) | data or information resource, database | GABI-Kat is a database of flanking sequence tags (FSTs) from T-DNA mutagenised A. thaliana plants. Over time, an increasing number of lines will become available from NASC. The "show sequence" page of SimpleSearch will display if a GABI-Kat line for a given FST has already been donated to NASC. Lines that have so far not been regrown and confirmed are only available from GABI-Kat directly. We have used four vectors: pAC106 (GenBank:AJ537513), pAC161 (GenBank:AJ537514), pGABI1 (GenBank:AY529716) and pADIS1 (GenBank:AY529717). Sequence and overview map data of all vectors are available from the download page. Features of interest which are not included in the map should be deduced from the sequence. For a specified line, the vector is displayed in the "Show Sequence" page of SimpleSearch. | a. thaliana, a. thaliana genome, mutagen, plant genome, FASEB list | has parent organization: Bielefeld University; North Rhine-Westphalia; Germany | nif-0000-02865 | SCR_012751 | GABI-KAT | 2026-08-29 11:30:39 | 56 | |||||||||
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Comparative Fungal Genomics Platform Resource Report Resource Website 10+ mentions |
Comparative Fungal Genomics Platform (RRID:SCR_012910) | data or information resource, database |
The CFGP (Comparative Fungal Genomics Platform) was designed for comparative genomics projects with diverse fungal genomes. The CFGP provides important bioinformatic tools, such as BLAST search, ClustalW analysis, InterPro Scan, SignalP, and PSORT2, which are very common tools for the researchers in the field of genomics. Many of them have been executed in the unix environment, so some specific computing knowledge is required. In the CFGP, users can use these tools simply by clicking their mouse button. In addition, all of the results of the analysis will be stored in the CFGP, so you can easily share those results with other members. |
fungal genome, comparative genomics, genomics | has parent organization: Seoul National University; Seoul; South Korea | nif-0000-02653 | http://cfgp.snu.ac.kr | SCR_012910 | CFGP | 2026-08-29 11:30:26 | 23 | ||||||||
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WU-BLAST Resource Report Resource Website 100+ mentions |
WU-BLAST (RRID:SCR_011824) | WU-BLAST | analysis service resource, data analysis service, production service resource, service resource | Tool to find regions of sequence similarity within selected protein databases quickly, with minimum loss of sensitivity. | protein, dna, rna |
is listed by: OMICtools is listed by: SoftCite has parent organization: European Bioinformatics Institute |
OMICS_01001 | SCR_011824 | 2026-08-29 11:30:08 | 135 | |||||||||
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CancerResource Resource Report Resource Website 1+ mentions |
CancerResource (RRID:SCR_011945) | data or information resource, database | Comprehensive database of cancer relevant proteins and compound interactions supported by experimental knowledge.Knowledgebase for drug-target relationships related to cancer as well as for supporting information or experimental data. | compound, drug, target gene, cancer relevant proteins, compound interactions, drug-target relationships, bio.tools |
is listed by: OMICtools is listed by: Debian is listed by: bio.tools |
Cancer | DFG ; European Union ; Federal Ministry of Education and Research BMBF ; International Research Training Group IRTG |
PMID:20952398 | Free, Freely available | biotools:cancerresource, OMICS_01576 | https://bio.tools/cancerresource | http://bioinf-data.charite.de/cancerresource/index.php?site=home | SCR_011945 | 2026-08-29 11:30:38 | 5 | ||||
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Blue Collar Bioinformatics Resource Report Resource Website 1+ mentions |
Blue Collar Bioinformatics (RRID:SCR_012913) | Blue Collar Bioinformatics | blog, data or information resource, narrative resource | This blog will appeal to those dealing with the practical day to day work of biological data analysis and presentation. | is listed by: OMICtools | OMICS_01712 | SCR_012913 | 2026-08-29 11:30:10 | 1 | ||||||||||
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NHLBI Exome Sequencing Project (ESP) Resource Report Resource Website 1000+ mentions |
NHLBI Exome Sequencing Project (ESP) (RRID:SCR_012761) | EVS | data or information resource, database | The goal of the project is to discover novel genes and mechanisms contributing to heart, lung and blood disorders by pioneering the application of next-generation sequencing of the protein coding regions of the human genome across diverse, richly-phenotyped populations and to share these datasets and findings with the scientific community to extend and enrich the diagnosis, management and treatment of heart, lung and blood disorders. The groups participating and collaborating in the NHLBI GO ESP include: Seattle GO - University of Washington, Seattle, WA Broad GO - Broad Institute of MIT and Harvard, Cambridge, MA WHISP GO - Ohio State University Medical Center, Columbus, OH Lung GO - University of Washington, Seattle, WA WashU GO - Washington University, St. Louis, MO Heart GO - University of Virginia Health System, Charlottesville, VA ChargeS GO - University of Texas Health Sciences Center at Houston | bio.tools, FASEB list |
is listed by: bio.tools is listed by: Debian has parent organization: University of Washington; Seattle; USA |
NHLBI | biotools:esp, nlx_156901, biotools:exome_variant_server | https://bio.tools/esp, https://bio.tools/exome_variant_server | SCR_012761 | Exome Variant Server, NHLBI GO Exome Sequencing Project (ESP) | 2026-08-29 11:30:09 | 2231 | ||||||
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ComiR Resource Report Resource Website 10+ mentions |
ComiR (RRID:SCR_013023) | ComiR | analysis service resource, data analysis service, production service resource, service resource | Data analysis service that predicts whether a given mRNA is targeted by a set of miRNAs. ComiR uses miRNA expression to improve and combine multiple miRNA targets for each of the four prediction algorithms: miRanda, PITA, TargetScan and mirSVR. The composite scores of the four algorithms are then combined using a support vector machine trained on Drosophila Ago1 IP data. | mirna, bio.tools |
is listed by: OMICtools is listed by: bio.tools is listed by: Debian has parent organization: University of Pittsburgh; Pennsylvania; USA |
NLM ; Fondazione RiMED |
PMID:23703208 PMID:23284279 |
Acknowledgement requested | OMICS_00395, biotools:comir | https://bio.tools/comir | SCR_013023 | Combinatorial miRNA targeting, ComiR: Combinatorial miRNA target prediction tool, ComiR - Combinatorial miRNA target prediction tool | 2026-08-29 11:30:10 | 26 | ||||
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CoMet Resource Report Resource Website 500+ mentions |
CoMet (RRID:SCR_011925) | CoMet | analysis service resource, data analysis service, production service resource, service resource | A web-server for fast comparative functional profiling of metagenomes. | is listed by: OMICtools | OMICS_01477 | SCR_011925 | CoMet - a web-server for fast comparative functional profiling of metagenomes | 2026-08-29 11:30:38 | 991 | |||||||||
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Retinal Information Network Resource Report Resource Website 10+ mentions |
Retinal Information Network (RRID:SCR_012733) | data or information resource, database | RetNet provides tables of genes and loci causing inherited retinal diseases, such as retinitis pigmentosa, macular degeneration and Usher syndrome, and related information. This information is provided to the research community and other interested individuals for research purposes only. The information should not be used for medical or commercial purposes. Although we strive for accuracy and completeness, we cannot guarantee that all information is correct and complete. We welcome comments and suggestions! | has parent organization: University of Texas System; Texas; USA | nif-0000-31454 | SCR_012733 | RetNet | 2026-08-29 11:30:09 | 34 |
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