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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | ||||||||||||||
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Advent research materials LTD Resource Report Resource Website 1+ mentions |
Advent research materials LTD (RRID:SCR_021045) | commercial organization | Supplier of high purity metals, alloys and polymers including Aluminium, Indium, Platinum, Silver, Gold, Copper, Indium, Iridium, Rhodium and Tantalum in multiple forms, dimensions and purities. | High purity metals, alloys, polymers, Aluminium, Indium, Platinum, Silver, Gold, Copper, Indium, Iridium, Rhodium, Tantalum | SCR_021045 | SciCrunch Registry | 2026-10-10 12:41:24 | 1 | ||||||||||||
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ISCAN: ETL-200 Primate Eye Tracking Laboratory Resource Report Resource Website 1+ mentions |
ISCAN: ETL-200 Primate Eye Tracking Laboratory (RRID:SCR_021044) | instrument resource | Images and tracks one eye of human subject or lower animal at operator selected sampling rate at 120 Hz or 240 Hz. Contains all components to record eye movements as subject views imagery presented on computer screen or other visual display device. Configured to track one eye and allows for up to approximately one to two inches of side to side or up and down head movement. | One eye tracking, one eye image, primate eye tracking, human subject, lower animal, record eye movements, instrument, equipment, USEDit | Commercially available | Model_Number_ETL-200 | SCR_021044 | SciCrunch Registry | ETL-200 Primate Eye Tracking Laboratory, ETL-200, ISCAN ETL-200 | 2026-10-10 12:41:44 | 2 | |||||||||
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Sutter: P-1000 Next Generation Micropipette Puller Resource Report Resource Website 10+ mentions |
Sutter: P-1000 Next Generation Micropipette Puller (RRID:SCR_021042) | instrument resource | P-1000 include diagnostic testing of all puller components, built in error detection of air pressure loss or filament burnout, easy access to ramp test, measurement of jaw temperature, and access to previous pull results with heat on times for each cycle of program.Help topics are pre-loaded to assist with on-site troubleshooting and built-in glossary includes text, pictures, and diagrams explaining terms used in micropipette fabrication. Rotary dial is offered as alternative to keypad for numerical entry. | Micropipette puller, instrument, equipment, USEDit | Commercially available | Model_Number_P1000 | SCR_021042 | SciCrunch Registry | 2026-10-10 12:41:16 | 17 | ||||||||||
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Molecular Devices: MultiClamp 700A Microelectrode Amplifier Resource Report Resource Website 1+ mentions |
Molecular Devices: MultiClamp 700A Microelectrode Amplifier (RRID:SCR_021040) | instrument resource | Computer controlled microelectrode current and voltage clamp amplifier for electrophysiology and electrochemistry. It is a versatile instrument capable of single-channel and whole-cell voltage clamping, current clamping, ionselective electrode recording, voltammetry and amperommetry. | Clamp amplifier, electrophysiology, electrochemistry, microelectrode amplifier, instrument, equipment, USEDit | Commercially available | Model_Number_MultiClamp_700A | SCR_021040 | SciCrunch Registry | MultiClamp 700A | 2026-10-10 12:41:44 | 4 | |||||||||
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Campden Instruments Ceramic Blades Resource Report Resource Website 1+ mentions |
Campden Instruments Ceramic Blades (RRID:SCR_021036) | instrument resource | Specialized Ceramic blades for Campden Vibrating Microtomes. These blades are honed with single bevel for superior slicing, particularly in tissue from older animals. They also work with the VT100S, Leica Biosystems. | Campden Instruments Ltd., ceramic blades, vibrotome blades, instrument, equipment, USEDit | Model_Number_ 75501C | SCR_021036 | SciCrunch Registry | Ceramic Blades Campden Instruments, Ceramic Blades | 2026-10-10 12:41:44 | 1 | ||||||||||
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Harvard Apparatus Resource Report Resource Website 1+ mentions |
Harvard Apparatus (RRID:SCR_021037) | commercial organization | Major US manufacturer of specialized physiological research laboratory equipment with current headquarters in Holliston, Massachusetts.Now part of Harvard Bioscience family of companies. | Specialized physiological research, laboratory equipment | SCR_021037 | SciCrunch Registry | 2026-10-10 12:41:24 | 5 | ||||||||||||
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Signac Resource Report Resource Website 50+ mentions |
Signac (RRID:SCR_021158) | data analysis software, data processing software, software application, software resource | Software framework for analysis of single cell chromatin data. Used for analysis, interpretation, and exploration of single cell chromatin datasets including datasets that co-assay DNA accessibility with gene expression, protein abundance, and mitochondrial genotype. Analysis of single-cell chromatin data including peak calling, quantification, quality control, dimension reduction, clustering, integration with single-cell gene expression datasets, DNA motif analysis, and interactive visualization. | Single cell chromatin data, single cell multimodal analysis, peak calling, quantification, quality control, dimension reduction, clustering, integration with single-cell gene expression datasets, DNA motif analysis, interactive visualization |
is listed by: CRAN is related to: SEURAT |
DOI:10.1101/2020.11.09.373613 | Free, Available for download, Freely available | https://CRAN.R-project.org/package=Signac | SCR_021158 | SciCrunch Registry | 2026-10-10 12:41:25 | 90 | ||||||||
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Waters High Definition Imaging Resource Report Resource Website 1+ mentions |
Waters High Definition Imaging (RRID:SCR_021054) | HDI | data analysis software, data processing software, software application, software resource, software toolkit | Software package contains data analysis and processing tools required for rapid and effective interrogation of imaging data. Allows for full integration of full spectrum molecular imaging experiments on SYNAPT family platforms, as well as DESI imaging on Xevo G2-XS QTof Mass Spectrometers, using single user interface. | Spectrum molecular imaging, image analysis, DESI imaging, Xevo G2-XS QTof Mass Spectrometers, SYNAPT family platforms, spectrum molecular imaging experiments | Restricted | SCR_021054 | SciCrunch Registry | High Definition Imaging v1.5 | 2026-10-10 12:41:45 | 1 | |||||||||
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Fluidigm CyTOF Resource Report Resource Website 10+ mentions |
Fluidigm CyTOF (RRID:SCR_021055) | data analysis software, data processing software, software application, software resource | Software for analyzing mass cytometry (CyTOF) data. | mass cytometry data analysis, CyTOF, Fluidigm, cytof | is used by: Fluidigm: CyTOF Helios Mass Cytometer | Restricted | SCR_021055 | SciCrunch Registry | CyTOF Software v7.0 | 2026-10-10 12:41:24 | 13 | |||||||||
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Exemplar Microscopy Images of Tissues Resource Report Resource Website 1+ mentions |
Exemplar Microscopy Images of Tissues (RRID:SCR_021052) | EMIT | 2d spatial image, data or information resource, data repository, data set, experimental protocol, image, image collection, image repository, immuno detection protocol, immunofluorescence, narrative resource, service resource, storage service resource | Reference dataset of multiplexed immunofluorescence microscopy images collected at HMS Laboratory of Systems Pharmacology. Includes set of images of different types for development and benchmarking of computational methods for image processing. As of 4/2/2021, EMIT comprises tissue microarray containing cores from 34 cancer, non-neoplastic diseases, and normal tissue collected from clinical discards under IRB supervised protocol. TMA was imaged using cyclic immunofluorescence method. Additional extensions of EMIT are currently in the planning stages. Long term goal is to compose ImageNet like resource for highly multiplexed images of tissues and tumors by consolidating high quality curated datasets. | Reference dataset, multiplexed immunofluorescence microscopy images, tissue microarray, cyclic immunofluorescence, tissues images, tumors images |
is related to: Synapse is related to: Harvard Medical School; Massachusetts; USA |
glioblastoma, lung adenocarcinoma, prostate adenocarcinoma, seminoma, meningioma, mesothelioma, GI stromal tumor, liver cirrhosis, leiomyosarcoma, high-grade serous ovarian cancer, diverticulitis, acute appendicitis, metastatic melanoma, dedifferentiated liposarcoma | Ludwig Center at Harvard Medical School and the Ludwig Cancer Research Foundation ; NCI U2C CA233262; NCI U2C CA233280; NIH U54 CA225088 |
DOI:10.1101/2021.03.15.435473 | Restricted | SCR_021052 | SciCrunch Registry | Exemplar Microscopy Images of Tissues ( and Tumors) | 2026-10-10 12:41:22 | 3 | |||||
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UnMICST Resource Report Resource Website 1+ mentions |
UnMICST (RRID:SCR_021050) | data processing software, image analysis software, image processing software, segmentation software, software application, software resource | Software tool as set of deep learning nuclei instance and semantic segmentation models that have been trained on 6 human tissue types: tonsil, small intestine, ovary, and cancers of brain, colon, prostate, and lung stained with Hoechst 33342 and combination of lamin B2 and nucleoporin98. Includes manually curated annotations as well as novel concept of introducing intentionally defocused and saturated images for robustness. | segmentation, identifying cells, segmenting tissue, universal models, tissue image, cell segmentation | Free, Available for download, Freely available | SCR_021050 | SciCrunch Registry | , Universal Models for Identifying Cells and Segmenting Tissue, UNet Model for Identifying Cells and Segmenting Tissue, UnMicst | 2026-10-10 12:41:24 | 3 | ||||||||||
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luox Resource Report Resource Website 1+ mentions |
luox (RRID:SCR_020994) | data access protocol, software resource, web service | Open access software platform to faciliate calculation of quantities related to light and lighting. Users can upload spectra and platform will calculate relevant quantites including luminance, chromaticity, and α-opic radiance and α-opic daylight luminances from spectra, generate visualisation of spectrum, and enable export of calculations in tabular form. | Light quantities calculation, luminance, chromaticity, α-opic radiance, α-opic daylight luminances, spectra, spectrum visualisation generation | Free, Freely available | SCR_020994 | SciCrunch Registry | 2026-10-10 12:41:15 | 7 | |||||||||||
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Fluigent: Flow Unit Resource Report Resource Website |
Fluigent: Flow Unit (RRID:SCR_021144) | instrument resource | Flow sensor for use with any flow control system. Unit to monitor flow rates in any microfluidic system with precision and accuracy. | Flow rate platform, Fluigent, flow sensor, flow control, flow rate monitor, microfluidic system, instrument, equipment, USEDit | is listed by: USEDit | Commercially available | SCR_021144 | SciCrunch Registry | 2026-10-10 12:41:46 | 0 | ||||||||||
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Fluigent: Flow EZ Resource Report Resource Website 1+ mentions |
Fluigent: Flow EZ (RRID:SCR_021145) | instrument resource | System for pressure based flow control. Enables to control or monitor flow rate as well as dispense volume. When combined with LINK module capabilities are extended by using Fluigent software to benefit from automation or live monitoring and recording of data. Flow EZ modules, are available in different pressure and vacuum ranges. | Pressure based flow control, flow rate monitor, instrument, equipment, USEDit | is listed by: USEDit | Commercially available | Model_Number_Flow EZ | SCR_021145 | SciCrunch Registry | Flow EZ, Flow EZ module, LINEUP FLOW EZ | 2026-10-10 12:41:25 | 1 | ||||||||
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Fluigent: LineUp LINK Resource Report Resource Website |
Fluigent: LineUp LINK (RRID:SCR_021143) | instrument resource | Provides connection of LineUp series modules to PC for software control to use Fluigent Software. | Software control connection, LineUp series modules connection, PC software control, instrument, equipment, USEDit | is listed by: USEDit | Commercially available | SCR_021143 | SciCrunch Registry | LineUp LINK | 2026-10-10 12:41:24 | 0 | |||||||||
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volBrain Resource Report Resource Website 1+ mentions |
volBrain (RRID:SCR_021020) | software resource | Software tool as MRI brain segmentation system to obtain automatically volumetric brain information from RI data. Works in automatic manner and is able to provide brain structure volumes without any human interaction. | MRI brain volumetry system, segmentation system, volumetric brain information, MRI data, | is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) | PMID:27512372 | Free, Available for download, Freely available | SCR_021020 | SciCrunch Registry | volBrain: online MRI segmentation, MRI Brain Volumetry System | 2026-10-10 12:41:24 | 3 | ||||||||
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Aperio VERSA Resource Report Resource Website 1+ mentions |
Aperio VERSA (RRID:SCR_021016) | data processing software, image analysis software, image processing software, software application, software resource | Software tool designed to support Leica Biosystems Aperio VERSA scanner. Digital pathology scanning software. Used for diverse imaging needs for digital pathology. | Leica Biosystems, Aperio VERSA scanner, digital pathology, scanning software, diverse imaging | Restricted | SCR_021016 | SciCrunch Registry | Aperio VERSA Digital Pathology Scanner Software | 2026-10-10 12:41:44 | 4 | ||||||||||
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Python based Relational Animal Tracking Resource Report Resource Website 1+ mentions |
Python based Relational Animal Tracking (RRID:SCR_021014) | PyRAT | data management software, software application, software resource | Software tool for management of animal facility data by Scionics Computer Innovation GmbH. Used by laboratory animal facilities. Used by researchers, animal house managers, animal keepers and others to access their data from same source. Available in English, French, German, Italian, Portuguese and Spanish. | Animal facility data, animal facility data management, Scionics Computer Innovation GmbH, | Restricted | SCR_021014 | SciCrunch Registry | PyRAT animal facility | 2026-10-10 12:41:15 | 1 | |||||||||
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MARS Data Analysis Software Resource Report Resource Website 10+ mentions |
MARS Data Analysis Software (RRID:SCR_021015) | data analysis software, data processing software, software application, software resource | Proprietary software package for data analysis by BMG Labtech. | Data analysis, BMG Labtech, microplate reader instrumentation software | Restricted | SCR_021015 | SciCrunch Registry | MARS Data Analysis, MARS | 2026-10-10 12:41:21 | 10 | ||||||||||
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MatNWB Resource Report Resource Website |
MatNWB (RRID:SCR_021156) | software resource | Software Matlab interface for reading and writing Neurodata Without Borders (NWB) 2.0 files. | reading NWB files, writing NWB files, Neurodata Without Borders, NWB 2.0 files |
is listed by: Neurodata Without Borders is related to: HDMF Common Schema |
Free, Available for download, Freely available | https://www.nwb.org/tools/, https://github.com/NeurodataWithoutBorders/matnwb | SCR_021156 | SciCrunch Registry | matnwb | 2026-10-10 12:41:24 | 0 |
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The NIDDK Information Network (dkNET) serves the needs of basic and clinical investigators by providing seamless access to large pools of data and research resources relevant to the mission of The National Institute of Diabetes Digestive and Kidney Diseases (NIDDK). dkNET is hosted at University of California San Diego, and is supported by NIH NIDDK grant U24DK097771.
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