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SciCrunch Registry is a curated repository of scientific resources, with a focus on biomedical resources, including tools, databases, and core facilities - visit SciCrunch to register your resource.
https://www.advent-rm.com/en-GB/
Supplier of high purity metals, alloys and polymers including Aluminium, Indium, Platinum, Silver, Gold, Copper, Indium, Iridium, Rhodium and Tantalum in multiple forms, dimensions and purities.
Proper citation: Advent research materials LTD (RRID:SCR_021045) Copy
http://www.cnbc.cmu.edu/braingroup/papers/ETL-200%20Instructional%20Manual.pdf
Images and tracks one eye of human subject or lower animal at operator selected sampling rate at 120 Hz or 240 Hz. Contains all components to record eye movements as subject views imagery presented on computer screen or other visual display device. Configured to track one eye and allows for up to approximately one to two inches of side to side or up and down head movement.
Proper citation: ISCAN: ETL-200 Primate Eye Tracking Laboratory (RRID:SCR_021044) Copy
https://www.sutter.com/MICROPIPETTE/p-1000.html
P-1000 include diagnostic testing of all puller components, built in error detection of air pressure loss or filament burnout, easy access to ramp test, measurement of jaw temperature, and access to previous pull results with heat on times for each cycle of program.Help topics are pre-loaded to assist with on-site troubleshooting and built-in glossary includes text, pictures, and diagrams explaining terms used in micropipette fabrication. Rotary dial is offered as alternative to keypad for numerical entry.
Proper citation: Sutter: P-1000 Next Generation Micropipette Puller (RRID:SCR_021042) Copy
https://mdc.custhelp.com/euf/assets/content/MultiClamp_700A_Manual2.pdf
Computer controlled microelectrode current and voltage clamp amplifier for electrophysiology and electrochemistry. It is a versatile instrument capable of single-channel and whole-cell voltage clamping, current clamping, ionselective electrode recording, voltammetry and amperommetry.
Proper citation: Molecular Devices: MultiClamp 700A Microelectrode Amplifier (RRID:SCR_021040) Copy
https://campdeninstruments.com/products/ceramic-blades-5-pack
Specialized Ceramic blades for Campden Vibrating Microtomes. These blades are honed with single bevel for superior slicing, particularly in tissue from older animals. They also work with the VT100S, Leica Biosystems.
Proper citation: Campden Instruments Ceramic Blades (RRID:SCR_021036) Copy
https://www.harvardapparatus.com/
Major US manufacturer of specialized physiological research laboratory equipment with current headquarters in Holliston, Massachusetts.Now part of Harvard Bioscience family of companies.
Proper citation: Harvard Apparatus (RRID:SCR_021037) Copy
https://satijalab.org/signac/index.html
Software framework for analysis of single cell chromatin data. Used for analysis, interpretation, and exploration of single cell chromatin datasets including datasets that co-assay DNA accessibility with gene expression, protein abundance, and mitochondrial genotype. Analysis of single-cell chromatin data including peak calling, quantification, quality control, dimension reduction, clustering, integration with single-cell gene expression datasets, DNA motif analysis, and interactive visualization.
Proper citation: Signac (RRID:SCR_021158) Copy
Software package contains data analysis and processing tools required for rapid and effective interrogation of imaging data. Allows for full integration of full spectrum molecular imaging experiments on SYNAPT family platforms, as well as DESI imaging on Xevo G2-XS QTof Mass Spectrometers, using single user interface.
Proper citation: Waters High Definition Imaging (RRID:SCR_021054) Copy
https://www.fluidigm.com/singlearticles/cytof-software-upgrade-7dot0
Software for analyzing mass cytometry (CyTOF) data.
Proper citation: Fluidigm CyTOF (RRID:SCR_021055) Copy
https://www.synapse.org/#!Synapse:syn22345748/wiki/605339
Reference dataset of multiplexed immunofluorescence microscopy images collected at HMS Laboratory of Systems Pharmacology. Includes set of images of different types for development and benchmarking of computational methods for image processing. As of 4/2/2021, EMIT comprises tissue microarray containing cores from 34 cancer, non-neoplastic diseases, and normal tissue collected from clinical discards under IRB supervised protocol. TMA was imaged using cyclic immunofluorescence method. Additional extensions of EMIT are currently in the planning stages. Long term goal is to compose ImageNet like resource for highly multiplexed images of tissues and tumors by consolidating high quality curated datasets.
Proper citation: Exemplar Microscopy Images of Tissues (RRID:SCR_021052) Copy
https://github.com/HMS-IDAC/UnMicst
Software tool as set of deep learning nuclei instance and semantic segmentation models that have been trained on 6 human tissue types: tonsil, small intestine, ovary, and cancers of brain, colon, prostate, and lung stained with Hoechst 33342 and combination of lamin B2 and nucleoporin98. Includes manually curated annotations as well as novel concept of introducing intentionally defocused and saturated images for robustness.
Proper citation: UnMICST (RRID:SCR_021050) Copy
Open access software platform to faciliate calculation of quantities related to light and lighting. Users can upload spectra and platform will calculate relevant quantites including luminance, chromaticity, and α-opic radiance and α-opic daylight luminances from spectra, generate visualisation of spectrum, and enable export of calculations in tabular form.
Proper citation: luox (RRID:SCR_020994) Copy
https://www.fluigent.com/product/microfluidic-components-3/frp-flow-rate-platform/
Flow sensor for use with any flow control system. Unit to monitor flow rates in any microfluidic system with precision and accuracy.
Proper citation: Fluigent: Flow Unit (RRID:SCR_021144) Copy
https://www.fluigent.com/product/microfluidic-components-3/lineup-series-flow-ez/
System for pressure based flow control. Enables to control or monitor flow rate as well as dispense volume. When combined with LINK module capabilities are extended by using Fluigent software to benefit from automation or live monitoring and recording of data. Flow EZ modules, are available in different pressure and vacuum ranges.
Proper citation: Fluigent: Flow EZ (RRID:SCR_021145) Copy
https://www.fluigent.com/product/microfluidic-components-3/lineup-series/#Link
Provides connection of LineUp series modules to PC for software control to use Fluigent Software.
Proper citation: Fluigent: LineUp LINK (RRID:SCR_021143) Copy
http://www.nitrc.org/projects/volbrain/
Software tool as MRI brain segmentation system to obtain automatically volumetric brain information from RI data. Works in automatic manner and is able to provide brain structure volumes without any human interaction.
Proper citation: volBrain (RRID:SCR_021020) Copy
https://www.leicabiosystems.com/digital-pathology/scan/aperio-versa/
Software tool designed to support Leica Biosystems Aperio VERSA scanner. Digital pathology scanning software. Used for diverse imaging needs for digital pathology.
Proper citation: Aperio VERSA (RRID:SCR_021016) Copy
https://www.scionics.com/pyrat_de.html
Software tool for management of animal facility data by Scionics Computer Innovation GmbH. Used by laboratory animal facilities. Used by researchers, animal house managers, animal keepers and others to access their data from same source. Available in English, French, German, Italian, Portuguese and Spanish.
Proper citation: Python based Relational Animal Tracking (RRID:SCR_021014) Copy
https://www.bmglabtech.com/mars-data-analysis-software/
Proprietary software package for data analysis by BMG Labtech.
Proper citation: MARS Data Analysis Software (RRID:SCR_021015) Copy
https://neurodatawithoutborders.github.io/matnwb/
Software Matlab interface for reading and writing Neurodata Without Borders (NWB) 2.0 files.
Proper citation: MatNWB (RRID:SCR_021156) Copy
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