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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | ||||||||||||||
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Clinical Trial Solutions with PPD Resource Report Resource Website 1+ mentions |
Clinical Trial Solutions with PPD (RRID:SCR_008457) | data or information resource, organization portal, portal | PPD is a leading global contract research organization (CRO), celebrating 25 years of providing drug discovery, development and lifecycle management services. Our clients and partners include pharmaceutical, biotechnology, medical device, academic and government organizations. With offices in 41 countries and more than 10,500 professionals worldwide, PPD applies innovative technologies, therapeutic expertise and a commitment to quality to help clients and partners accelerate the delivery of safe and effective therapeutics and maximize the returns on their R&D investments. Discovery Services: BioDuro, A PPD Company A drug discovery services company focused on integrated drug discovery programs Nonclinical development Preclinical services partners. Compound Partnering PPD''s compound partnering business is now Furiex Pharmaceuticals, Inc., an independent, publicly traded company. Collaboration with Merck Our strategic collaboration with Merck enabled us to acquire its vaccines and biologics infrastructure, broaden our therapeutic expertise and expand our existing relationship. Alliance with WHISCON We have expanded our post-approval safety expertise and risk management through an alliance with World Health Information Science Consultants. Partnership with PUL To meet growing client demand in Southeast Asia, we partnered with Peking Union Lawke Biomedical Development Limited (PUL) to establish our central lab services in China. Our e-Newsletter is your source for what is happening at PPD and in the CRO industry. | nif-0000-30386 | SCR_008457 | SciCrunch Registry | PPD | 2026-09-26 02:17:46 | 1 | |||||||||||
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SABiosciences Resource Report Resource Website 100+ mentions |
SABiosciences (RRID:SCR_008578) | SABiosciences | material resource, reagent supplier | SABiosciences, as part of QIAGEN, offers nucleic acid (DNA, RNA, miRNA) and protein isolation, preparation and purification services, as well as assay,array, sequencing, NGS and biomarker services and lab essentials.Offers PCR services, assays, array systems, and expression vectors. Acquired by QIAGEN in 2009. | pcr assay panel, dna, rna, epigenetic, microrna, target, pcr | nif-0000-31480 | http://www.superarray.com, http://www.sabiosciences.com/ | SCR_008578 | SciCrunch Registry | 2026-09-26 02:17:46 | 308 | |||||||||
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Centre for Automotive Safety Research Resource Report Resource Website |
Centre for Automotive Safety Research (RRID:SCR_008573) | data or information resource, database, organization portal, portal | The Centre for Automotive Safety Research at the University of Adelaide, is internationally recognised as a leading research organisation in its field. The Centre conducts high quality independent research that enables rational decision making, leading to a reduction in the human and economic losses from road crashes. The Centre is focused on: * Conducting multidisciplinary research to understand how road crashes and the resulting injuries are caused * Proposing and evaluating ways to prevent crashes and injuries * Providing independent professional advice on road safety matters to government and non-government organisations in Australia and overseas The Centre began life in 1973 as the Road Accident Research Unit (RARU) with the planning and undertaking of an in-depth study of road accidents in the Adelaide metropolitan area. From 1981 through 1998, the Unit''s work was supported by a grant from the National Health And Medical Research Council. During that grant period RARU''s research program was concentrated in two areas: the study of brain injury mechanisms in fatally injured road users and the epidemiology of drink driving and alcohol related crashes. Notably, an investigation of the influence of vehicle speed in fatal pedestrian accidents led on to case control studies of the relationship between a driver''s travelling speed and risk of involvement in a casualty crash in both urban and rural areas. RARU''s analysis of the occurrence of brain injury in road crashes called into question the then prevailing paradigm of brain injury mechanisms. This prompted the development of an experimental study of axonal injury that, in turn, led to the Japan Automobile Research Institute initiating a formal collaborative research agreement with RARU, and now with CASR, in the area of crash injury biomechanics. Also a part of our legacy is that over 40 years ago the Centre''s previous Director, Professor Jack McLean, co-authored the first paper in the world to show that car design played a major role in pedestrian protection, revealing that pedestrians are run under, not over, by the striking car. | has parent organization: University of Adelaide; Adelaide; Australia | nif-0000-31471 | SCR_008573 | SciCrunch Registry | Centre for Automotive Safety Research | 2026-09-26 02:17:46 | 0 | ||||||||||
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ERP PCA Toolkit Resource Report Resource Website 1+ mentions |
ERP PCA Toolkit (RRID:SCR_013105) | ERP PCA Toolkit | data processing software, software application, software resource, software toolkit | This Matlab toolkit is a general purpose tool for editing, visualizing, and analyzing EEG data (both Event Related Potential - ERP and spectral) whose most recent version has been downloaded over 1000 times. Its three chief highlights are: 1) an optimized automatic artifact correction function that includes ICA correction for eye blinks and saccades. 2) Extensive support for easily conducting PCA and ICA through all stages of the procedure, including inspection of reconstituted waveforms and batch ANOVAs. 3) Implementation of robust ANOVAs, including McCarthy-Wood vector test. It has a graphical user interface for point and click usage and comes with an extensive illustrated tutorial. A description of the toolkit was published in Dien (2010) in Journal of Neuroscience Methods. It relies on both internal functions as well as borrowed functions from both EEGlab and FieldTrip. | eeg, meg, electrocorticography, matlab, visualization | is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) | GNU General Public License v2 | nlx_155753 | http://www.nitrc.org/projects/erppcatoolkit | SCR_013105 | SciCrunch Registry | 2026-09-26 02:17:49 | 6 | |||||||
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University of Miami Labs and Facilities Resource Report Resource Website |
University of Miami Labs and Facilities (RRID:SCR_010996) | UM Labs and Facilities, UM Labs & Facilities | data or information resource, organization portal, portal | Number of core facilities and shared resources developed at University of Miami are available to researchers and trainees. These resources allow centralized access to specialized equipment and services, providing cutting edge technologies, reagents, and special products needed to conduct high quality, interdisciplinary research in cost effective way. |
is listed by: ScienceExchange is related to: University of Miami Stable Isotope Laboratory Core Facillity is related to: UM Sylvester Comprehensive Cancer Center Labs and Facilities has parent organization: University of Miami; Florida; USA |
SciEx_925 | http://www.scienceexchange.com/facilities/university-of-miami | SCR_010996 | SciCrunch Registry | University of Miami Labs & Facilities | 2026-09-26 02:17:48 | 0 | ||||||||
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National Centers for Biomedical Computing Resource Report Resource Website 1+ mentions |
National Centers for Biomedical Computing (RRID:SCR_010635) | NCBC | data or information resource, organization portal, portal | The NCBCs are a set of networked computation core facilities for biomedical infrastructure funded under the NIH Common Fund, the National Program of Excellence in Biomedical Computing (NPEBC). There are seven funded Centers that cover systems biology, image processing, biophysical modeling, biomedical ontologies, information integration, and tools for gene-phenotype and disease analysis. The centers will create innovative software programs and other tools that enable the biomedical community to integrate, analyze, model, simulate, and share data on human health and disease. Each Center has Cores that are focused on (1) computational science, (2) biomedical computational science and (3) driving biological projects whose intent is to drive the interaction between computational and biomedical computational science. In addition to the Centers, the NIH has a number of active program announcements to develop collaborations with the biomedical research community��this includes announcements from the Biomedical Information Science and Technology Initiative (BISTI) and the Program for Collaborations with National Centers for Biomedical Computing. There are numerous efforts in education and training that emanate from the Centers and there is an annual all hands meeting. | nih (common fund) |
is related to: iDASH is related to: iTools is related to: Center for Computational Biology at UCLA is related to: i2b2 Research Data Warehouse is related to: Informatics for Integrating Biology and the Bedside is related to: National Alliance for Medical Image Computing is related to: Simbios is related to: National Center for Biomedical Ontology is related to: National Center for Integrative Biomedical Informatics is related to: MAGNet - Multiscale Analysis of Genomic and Cellular Networks is related to: iDASH has parent organization: National Institutes of Health is parent organization of: Biositemaps is parent organization of: National Center for Biomedical Ontology is parent organization of: Biomedical Resource Ontology is parent organization of: National Alliance for Medical Image Computing is parent organization of: NCBO Annotator |
NIH | nlx_62048 | SCR_010635 | SciCrunch Registry | NIH Roadmap National Centers for Biomedical Computing | 2026-09-26 02:17:48 | 1 | |||||||
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GSA-SNP Resource Report Resource Website 10+ mentions |
GSA-SNP (RRID:SCR_013109) | GSA-SNP | data processing software, software application, software resource | A tool for the gene-set (or pathway) analysis of a genome-wide association study result. It accepts a genome-wide list of SNPs and their association P-values. It summarizes the SNP P-values into nearby genes. The gene-by-gene summary results are then further summarized by gene-sets such as Gene Ontology, KEGG pathways, or user-created gene-sets. Various standardization and statistical tests can be performed and the resulting gene-sets that pass a significance level after multiple-testing correction are reported. The tool is written in Java and is available as a standalone version. | clinical neuroinformatics, computational neuroscience, imaging genomics, bio.tools |
is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) is listed by: Debian is listed by: bio.tools has parent organization: Soongsil University; Seoul; South Korea |
PMID:20501604 | GNU General Public License v2 | nlx_155765, biotools:gsa-snp | https://bio.tools/gsa-snp | SCR_013109 | SciCrunch Registry | 2026-09-26 02:17:49 | 18 | ||||||
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PrabiG Resource Report Resource Website |
PrabiG (RRID:SCR_010636) | data or information resource, organization portal, portal | PrabiG is the Grenoble portal of the Prabi (Rhone-Alpes Bioinformatics Center) platform. It aims at providing the scientific community with tools and data related to proteomics and metabolomics. PrabiG is currently hosting the following projects : * UniPathway * ProteHome * OBIWarehouse * AT_Chloro |
has parent organization: PRABI is parent organization of: UniPathway is parent organization of: OBIWarehouse |
nlx_62118 | SCR_010636 | SciCrunch Registry | Prabi Grenoble | 2026-09-26 02:17:48 | 0 | ||||||||||
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Rick Hansen Institute Resource Report Resource Website 1+ mentions |
Rick Hansen Institute (RRID:SCR_008570) | RHI | data or information resource, database, organization portal, portal | Organization that facilitates spinal cord injury research and care. By accelerating the translation of discoveries and best practices into improved treatments, it aims to improve the lives of people living with SCI. | nonprofit, spinal, bone, cord, injury, canada, british columbia, international, registry | Canadian Government ; Rick Hansen Foundation ; Rick Hansen ; the Government of Canada through Western Economic Diversification ; the Governments of British Columbia ; Alberta ; Manitoba and Ontario |
nif-0000-31461 | SCR_008570 | SciCrunch Registry | 2026-09-26 02:17:46 | 8 | |||||||||
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Trim Galore Resource Report Resource Website 5000+ mentions Rating or validation data |
Trim Galore (RRID:SCR_011847) | Trim Galore! | data processing software, software application, software resource | Software tool to automate quality and adapter trimming as well as quality control, with some added functionality to remove biased methylation positions for RRBS sequence files for directional, non-directional or paired-end sequencing. Wrapper around Cutadapt and FastQC to consistently apply adapter and quality trimming to FastQ files, with extra functionality for Reduced Representation Bisulfite Sequencing data. | Automate, quality, adapter, trimming, remove, biased, methylation, position, RRBS, reduced, representation, bisulfite, data, sequence, wrapper, bio.tools |
is listed by: OMICtools is listed by: bio.tools is listed by: Debian has parent organization: Babraham Institute works with: cutadapt |
Free, Available for download, Freely available | biotools:trim_galore, OMICS_01096, SCR_016946 | https://github.com/FelixKrueger/TrimGalore, https://bio.tools/trim_galore, https://sources.debian.org/src/trim-galore/ | SCR_011847 | SciCrunch Registry | TrimGalore | 2026-09-26 02:17:48 | 7582 | ||||||
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National Association of Science Writers Resource Report Resource Website 1+ mentions |
National Association of Science Writers (RRID:SCR_014929) | NASW | data or information resource, group, portal | Association whose goal is to foster the spread of accurate scientific information. | association, group, portal, writing, sciences, forum | Paid membership | SCR_014929 | SciCrunch Registry | National Association of Science Writers (NASW) | 2026-09-26 02:17:51 | 2 | |||||||||
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Cancer Cell Line Encyclopedia Resource Report Resource Website 50+ mentions |
Cancer Cell Line Encyclopedia (RRID:SCR_013836) | CCLE | data or information resource, database, portal, project portal | A collaborative project between the Broad Institute and the Novartis Institutes for Biomedical Research and its Genomics Institute of the Novartis Research Foundation, with the goal of conducting a detailed genetic and pharmacologic characterization of a large panel of human cancer models. The CCLE also works to develop integrated computational analyses that link distinct pharmacologic vulnerabilities to genomic patterns and to translate cell line integrative genomics into cancer patient stratification. The CCLE provides public access to genomic data, analysis and visualization for about 1000 cell lines. | cancer, cell line, human, human cancer model, genetic, portal, database, FASEB list |
is related to: Broad Institute is related to: Cancer Research Data Commons |
DOI:10.1038/nature11003 | Public | r3d100011819 | SCR_013836 | SciCrunch Registry | 2026-09-26 02:17:49 | 95 | |||||||
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Florida ExpertNet Resource Report Resource Website 1+ mentions |
Florida ExpertNet (RRID:SCR_013959) | data or information resource, portal | A portal that connects users to reserch expertise and resources within Florida's universities. Users can search for experts (principal investigators), funded research projects, centers and institutes, technology licensing opportunities, speakers, and instructional programs. | portal, Florida universities, Florida |
lists: Florida Agricultural and Mechanical University; Florida; USA lists: Florida State University; Florida; USA lists: University of Florida; Florida; USA lists: University of Miami; Florida; USA lists: University of South Florida; Florida; USA is listed by: Connected Researchers is related to: Connected Researchers |
Free, Public | SCR_013959 | SciCrunch Registry | ExpertNet | 2026-09-26 02:17:49 | 1 | |||||||||
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TiltPicker Resource Report Resource Website |
TiltPicker (RRID:SCR_016674) | data processing software, software application, software resource | Software tool to facilitate particle selection in single particle electron microscopy. An interactive graphical interface application designed to streamline the selection of particle pairs from tilted-pair datasets. Designed to work with existing software tools for image processing. | particle, selection, single, electron, microscopy, interactive, graphical, interface, tilted, pair, dataset, image, processing | is listed by: OMICtools | NCRR RR17573; NCRR RR23093 |
PMID:19374019 | Free, Available for download, Freely available | http://emg.nysbc.org/redmine/projects/appion/wiki/Appion_Home | SCR_016674 | SciCrunch Registry | 2026-09-26 02:17:52 | 0 | |||||||
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Apache Spark Resource Report Resource Website 10+ mentions |
Apache Spark (RRID:SCR_016557) | data analytics software, data processing software, software application, software resource | Software tool as a unified analytics engine for large scale data processing. An open source distributed general purpose cluster computing framework. | unified, analytics, engine, large, scale, data, processing |
is related to: VariantSpark is related to: spark-xml is related to: spark-xml-utils is related to: SparkFHE has parent organization: University of California at Berkeley; Berkeley; USA |
DOI:10.1145/2934664 | Free, Available for download, Freely available | SCR_016557 | SciCrunch Registry | 2026-09-26 02:17:52 | 43 | |||||||||
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Predicting Language Outcome and Recovery After Stroke (PLORAS) Resource Report Resource Website |
Predicting Language Outcome and Recovery After Stroke (PLORAS) (RRID:SCR_014498) | data or information resource, portal, project portal | A research project investigating the difficulties of recovering language after stroke (aphasia). The overall aim of the study is to give future stroke survivors accurate predictions of their aphasia recovery by creating clinical tools and discerning why some patients recover from aphasia better than others. | stroke, aphasia, language, project portal, aphasia recovery, language outcome, recovery prediction | Aphasia, Stroke | Wellcome Trust ; Stroke Association |
Public | SCR_014498 | SciCrunch Registry | 2026-09-26 02:17:50 | 0 | |||||||||
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Prophet Resource Report Resource Website 1+ mentions |
Prophet (RRID:SCR_017083) | data processing software, software application, software resource | Open source software package for producing forecasts for time series data that has multiple seasonality with linear or non linear growth. Implemented in R or Phyton. | data, science, forecast, time, series, multiple, seasonality, linear, non linear, growth, analysis | is listed by: CRAN | DOI:10.7287/peerj.preprints.3190v2 | Free, Available for download, Freely available | https://cran.r-project.org/web/packages/prophet/, https://pypi.org/project/fbprophet/ | SCR_017083 | SciCrunch Registry | Prophet Automatic Forecasting Procedure | 2026-09-26 02:17:53 | 3 | |||||||
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LINCS Data Portal Resource Report Resource Website 10+ mentions |
LINCS Data Portal (RRID:SCR_014939) | data or information resource, portal | Portal which provides a unified interface for searching LINCS dataset packages and reagents. Users can use the portal to access datasets, small molecules, cells, genes, proteins and peptides, and antibodies. | portal, assay, lincs, kinome, dataset, small molecule, cell, gene, protein, peptide, and antibodies. |
is related to: LINCS Data Portal 2.0 has parent organization: University of Miami; Florida; USA is parent organization of: CycIF.org |
NIH Common Fund ; NHLBI 1U01HL111561; NHLBI 3U01HL111561-01S1; NHLBI 3U01HL111561-02S1; NHGRI U54HG006097; NHGRI U54 HG006093 |
Freely available | SCR_014939 | SciCrunch Registry | 2026-09-26 02:17:51 | 14 | |||||||||
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ResearchConnection Resource Report Resource Website |
ResearchConnection (RRID:SCR_013965) | collaboration tool, service resource, software resource |
THIS RESOURCE IS NO LONGER IN SERVICE. Documented June 21, 2018. A service resource and collaboration tool which connects academically affiliated researchers to undergraduate and graduate students. Researchers can advertise their lab and open positions as well as organize and manage applicants. Students can browse labs based on university and field(s) of interest and apply directly for lab positions or jobs. Universities must officially partner with ResearchConnection to advertise labs. |
service resource, collaboration tool, networking, lab, university |
uses: Boston University; Massachusetts; USA is used by: Boston University; Massachusetts; USA is listed by: Connected Researchers is related to: Connected Researchers |
THIS RESOURCE IS NO LONGER IN SERVICE | SCR_013965 | SciCrunch Registry | 2026-09-26 02:17:50 | 0 | ||||||||||
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Single Cell Portal Resource Report Resource Website 100+ mentions |
Single Cell Portal (RRID:SCR_014816) | SCP | data or information resource, portal | Portal specializes in visualizing and disseminating single cell data. Allows you to use natural language and faceted search to discover other scientists’ research and share your own findings. Each study includes information on cell types, singular or multiple gene expression, and spatial transcriptomics. Interactive visualizations allow to explore cell clusters and search for related genes. | Single cell data visualization, disseminating single cell data, single cell data, brain, RNA, rna seq, multiple gene expression, spatial transcriptomics, open science |
is used by: BRAIN Initiative is used by: BICCN is related to: BICCN Anatomy and Morphology Project is related to: Allen Institute for Brain Science has parent organization: Broad Institute has organization facet: Terra |
Free, Available for download, Freely available | https://portals.broadinstitute.org/single_cell?utf8=✓&search_terms=e+coli&order=&commit= | SCR_014816 | SciCrunch Registry | Single-Cell RNA-Seq Portal for Brain Research | 2026-09-26 02:17:51 | 366 |
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The NIDDK Information Network (dkNET) serves the needs of basic and clinical investigators by providing seamless access to large pools of data and research resources relevant to the mission of The National Institute of Diabetes Digestive and Kidney Diseases (NIDDK). dkNET is hosted at University of California San Diego, and is supported by NIH NIDDK grant U24DK097771.
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