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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Simple Assignment of Spots to Surfaces Resource Report Resource Website 1+ mentions |
Simple Assignment of Spots to Surfaces (RRID:SCR_018797) | SASS | data analysis software, data processing software, software application, software resource | Software tool as custom analysis code combining single-cell traces and spot detection from live imaging movies and using Imaris output. | Custom analysis, single cell trace, spot detection, live imaging movie, assign spots, Imaris detection, expression domain, cell distance |
uses: Imaris has parent organization: University of Manchester; Manchester; United Kingdom |
DOI:10.1101/837179 | Free, Available for download, Freely available | SCR_018797 | SciCrunch Registry | 2026-10-10 12:40:20 | 7 | ||||||||
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Harvard Apparatus: Inspira Advanced Safety Ventilator, Volume Controlled Resource Report Resource Website |
Harvard Apparatus: Inspira Advanced Safety Ventilator, Volume Controlled (RRID:SCR_018834) | instrument resource | Volume Controlled Ventilator delivers desired tidal volume to animal by precisely controlling stroke of piston. Since actual stroke length may be modified for given stroke, sigh breaths are supported. | Volume controlled ventilator, ventilator, tidal volume delivery, piston stroke control, instrument, equipment | is listed by: USEDit | https://www.harvardapparatus.com/media/harvard/pdf/Inspira_557058_9.pdf | SCR_018834 | SciCrunch Registry | Volume Controlled, Inspira Advanced Safety Ventilator | 2026-10-10 12:40:21 | 0 | |||||||||
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ADInstruments: PowerLab/4SP acquisition system Resource Report Resource Website 10+ mentions |
ADInstruments: PowerLab/4SP acquisition system (RRID:SCR_018833) | instrument resource | Integrated system of hardware and software designed to record, display, and analyse experimental data. Consists of PowerLab recording unit and possible ancillary devices, software that run on computer to which PowerLab is connected. PowerLab/4SP has four inputs for recording external signals. | Record data, display data, analyse experimental data, recording unit, integrated system, ADInstruments | Restricted | https://m-cdn.adinstruments.com/owners-guides/PowerLab%20SP%20Series%20OG.pdf | SCR_018833 | SciCrunch Registry | PowerLab/4SP | 2026-10-10 12:40:28 | 10 | |||||||||
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Millar: PCU-2000 Pressure Control Unit with Patient Isolation Resource Report Resource Website 1+ mentions |
Millar: PCU-2000 Pressure Control Unit with Patient Isolation (RRID:SCR_018840) | instrument resource | Pressure Control Unit is two channel, patient isolated, line powered bridge amplifier for connecting one or two single sensor Millar Mikro-Tip catheters to clinical patient monitor or standalone data acquisition system. Provides built in ridge excitation eliminating need for separate bridge amplifier. Analog output signal level of 1V/100 mmHg is compatible with most pressure monitors and data acquisition systems. In line power supply adapts automatically to line voltages from 100 to 240 volts AC. | Millar, PCU-2000, pressure control unit, patient isolation, amplifier, clinical patient monitor, catherer connector, equipment, instrument | is listed by: USEDit | Restricted | SCR_018892 | https://www.artisantg.com/Scientific/75461-1/Millar-PCU-2000-Dual-Channel-Pressure-Control-Unit-With-Patient-Isolation, https://www.artisantg.com/info/Millar_PCU_2000_Manual.pdf | SCR_018840 | SciCrunch Registry | PCU-2000 Dual Channel Pressure Control Unit, PCU-2000 Pressure Control Unit | 2026-10-10 12:40:58 | 1 | |||||||
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CED: Micro1401-4 data acquisition unit Resource Report Resource Website 1+ mentions |
CED: Micro1401-4 data acquisition unit (RRID:SCR_018846) | instrument resource | Unit records waveform data, digital event and marker information and can simultaneously generate waveform and digital outputs in real time for multi tasking experimental control. | data acquisition unit, cost effective data acquisition, waveform data recording, digital event, marker information, real time, instrument, equipment | is listed by: USEDit | Restricted | https://ced.co.uk/img/Micro4en.pdf | SCR_018846 | SciCrunch Registry | Cost effective Data Acquisition Unit (CED) | 2026-10-10 12:40:21 | 4 | ||||||||
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Robetta Resource Report Resource Website 100+ mentions |
Robetta (RRID:SCR_018805) | analysis service resource, data access protocol, production service resource, service resource, software resource, web service | Web tool as protein structure prediction service. Provides automated structure prediction and analysis tools that can be used to infer protein structural information from genomic data. Produces model for entire protein sequence in presence or absence of sequence homology to protein of known structure. | Protein structure prediction, protein, structure prediction, prediction service, automated prediction, analysis tools, genomic data, protein sequence, protein model, bio.tools |
is listed by: Debian is listed by: bio.tools has parent organization: University of Washington; Seattle; USA |
PMID:15215442 | Restricted | biotools:robetta | https://bio.tools/robetta | SCR_018805 | SciCrunch Registry | 2026-10-10 12:40:27 | 487 | |||||||
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FALCON Resource Report Resource Website 100+ mentions |
FALCON (RRID:SCR_018804) | analysis service resource, data access protocol, production service resource, service resource, software resource, web service | Web tool as high throughput protein structure prediction service. High throughput server for protein structure prediction. | Protein structure, protein structure prediction, simulation, 3D structure, protein, high throughput protein, structure prediction | Restricted | SCR_018804 | SciCrunch Registry | FALCON@home | 2026-10-10 12:40:58 | 432 | ||||||||||
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WEBMAXC EXTENDED Resource Report Resource Website 10+ mentions |
WEBMAXC EXTENDED (RRID:SCR_018807) | analysis service resource, data access protocol, production service resource, service resource, software resource, web service | Web tool for computing metal ion concentrations in physiological solutions. Used for determining free metal concentration in presence of chelators or total metal given desired free concentration. | Metal ion concentration, physiological solution, free metal concentration, chelator, free concentration, free metal concentration calculation |
is related to: MAXCHELATOR has parent organization: Stanford University; Stanford; California |
Free, Freely available | SCR_018807 | SciCrunch Registry | WEBMAXC Extended | 2026-10-10 12:40:20 | 24 | |||||||||
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Ripple Neuro: Grapevine Neural Interface Processor Resource Report Resource Website 1+ mentions |
Ripple Neuro: Grapevine Neural Interface Processor (RRID:SCR_018897) | instrument resource | Interface processor as 512 channel stimulation and recording electrophysiology tool. Designed to be safe for human subjects. | Ripple Neuro, Grapevine processor, Ripple product, neural interface processor, processor, electrophysiology recorder, equipment, instrument | is listed by: USEDit | Restricted | SCR_018897 | SciCrunch Registry | 2026-10-10 12:40:22 | 3 | ||||||||||
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C-IMMSIM Resource Report Resource Website 1+ mentions |
C-IMMSIM (RRID:SCR_018775) | data access protocol, service resource, software resource, web service | Web prediction tool for molecular binding in simulation of immune system. Agent based simulator of immune response that represents pathogens, as well as lymphocytes receptors, by means of their amino acid sequences and makes use of bioinformatics methods for T and B cell epitope prediction.Calculates immune response to generic pathogenic secondary structure. Allows users to submit antigen protein sequence and specify schedule of its injection as well as host haplotype. | Molecular binding prediction, molecular binding simulation, immune system, pathogen, lymphocyte receptor, amino acid sequence, T cell epitope prediction, B cell epitope prediction, calculate immune response, generic pathogenic secondary structure, antigen protein sequence, host haplotype, immunogenic part, invading pathogen | European Community | PMID:20419125 | Restricted | SCR_018775 | SciCrunch Registry | 2026-10-10 12:40:20 | 5 | |||||||||
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ODAM Resource Report Resource Website 1+ mentions |
ODAM (RRID:SCR_018774) | data access protocol, data management software, software application, software repository, software resource, web service | Software experimental data table management system to make research data accessible and available for reuse with minimal effort on part of data provider. Allows any scientist or data researcher to be able to explore dataset and then extract some or all of data according to their needs. Designed to manage experimental data tables in quick and easy way for users. | Experimental data tables, research data management, OpenAPI, FAIR Data principles, assessment, EDTMS, data management, bio.tools |
is listed by: Debian is listed by: bio.tools |
Free, Available for download, Freely available | BioTools:ODAM, biotools:ODAM | https://bio.tools/ODAM, https://bio.tools/ODAM, https://bio.tools/ODAM, https://bio.tools/ODAM | SCR_018774 | SciCrunch Registry | Open Data for Access and Mining | 2026-10-10 12:40:26 | 3 | |||||||
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Leica: DM4000 B Microscope Resource Report Resource Website 1+ mentions |
Leica: DM4000 B Microscope (RRID:SCR_018895) | instrument resource | Fluorescent microscope which supports fluorescence contrast techniques. This product is archived and has been replaced by the Leica DM4000 B LED. | Leica, fluorescent microscope, DM4000 B, microscope, instrument, equipment | is listed by: USEDit | Restricted | https://meyerinst.com/library/uploads/dm4000b.pdf | SCR_018895 | SciCrunch Registry | 2026-10-10 12:40:28 | 1 | |||||||||
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Millar: MPVS Ultra Pressure Volume Loop System Resource Report Resource Website |
Millar: MPVS Ultra Pressure Volume Loop System (RRID:SCR_018894) | instrument resource | Pressure volume loop system with seven available volume segments, range of gain settings, integrated internal ECG circuit and dual pressure amplifiers. System can be used in either large or small animal subjects, depending on which size catheter is used. | Millar, ultra pressure, pressure volume loop system, instrument, equipment | is listed by: USEDit | Restricted | SCR_018894 | SciCrunch Registry | Pressure Volume Loop System | 2026-10-10 12:40:59 | 0 | |||||||||
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Scalable Analytics for Brain Exploration Research Resource Report Resource Website 1+ mentions |
Scalable Analytics for Brain Exploration Research (RRID:SCR_018812) | SABER, saber | data processing software, software application, software library, software resource, software toolkit, workflow software | Library of containerized tools and workflow deployment system for enabling processing of large neuroimaging datasets. Provides canonical neuroimaging workflows specified in standard workflow language (CWL), integration with workflow execution engine (Airflow), imaging database (bossDB), and parameter database (Datajoint) to deploy workflows at scale, and tools to automate deployment and optimization of neuroimaging pipelines. | Running containerized workflow, large neuroimaging datasets, canonical neuroimaging workflow, neuroimaging pipeline deployment, neuroimaging pipeline optimization | is related to: Brain Observatory Storage Service and Database (BossDB) | NIMH R24 MH114799 | DOI:10.1101/615161v1.full | Free, Available for download, Freely available | SCR_018812 | SciCrunch Registry | 2026-10-10 12:40:58 | 1 | |||||||
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PHD SECONDARY STRUCTURE Resource Report Resource Website 1+ mentions |
PHD SECONDARY STRUCTURE (RRID:SCR_018778) | data access protocol, service resource, software resource, web service | Web tool for secondary structure prediction. Used for network protein sequence analysis. | Secondary structure prediction, network protein, protein sequence analysis, protein sequence, secondary structure predictor | Free, Freely available | SCR_018778 | SciCrunch Registry | 2026-10-10 12:40:58 | 2 | |||||||||||
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Muscle X Resource Report Resource Website 1+ mentions |
Muscle X (RRID:SCR_018811) | data analysis software, data processing software, image analysis software, software application, software resource, software toolkit | Software suite as collection of programs intended to assist with analyzing diffraction X-ray images. MuscleX diffraction X-ray image analyzing toolkit. Data reduction software for X-ray fiber diffraction data. | Diffraction analysis, x ray image, diffraction X-Ray image analysis, X-ray data, X-ray fiber diffraction data, data analysis, data reduction | has parent organization: Illinois Institute of Technology; Illinois; USA | Free, Available for download, Freely available | https://sourceforge.net/projects/musclex/files/ | SCR_018811 | SciCrunch Registry | MuscleX, Muscle X 1.14.12 | 2026-10-10 12:40:21 | 5 | ||||||||
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PSORT II Resource Report Resource Website 10+ mentions |
PSORT II (RRID:SCR_018772) | analysis service resource, data access protocol, production service resource, service resource, software resource, web service | Web tool for prediction of protein sorting signals and localization sites in amino acid sequencies. Recommended for animal/yeast sequences. Analyzes input sequence by applying stored rules for various sequence features of known protein sorting signals to report possiblity for input protein to be localized at each candidate site with additional information. | Protein sorting signal prediction, protein localization site, localization site prediction, amino acid sequence, sequence analysis, protein sorting signal | is related to: Psort | Free, Freely available | https://psort.hgc.jp/, https://www.psort.org/ | SCR_018772 | SciCrunch Registry | prediction of protein sorting signals and localization sites in amino acid sequencies, psort2, psort II | 2026-10-10 12:40:20 | 49 | ||||||||
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Beckman Coulter: Life Sciences MoFlo Astrios EQ Cell Sorter Resource Report Resource Website 10+ mentions |
Beckman Coulter: Life Sciences MoFlo Astrios EQ Cell Sorter (RRID:SCR_018893) | instrument resource | High speed flow cytometry sorter. | Beckman Coulter, MoFlo Astrios, cell sorter, high speed cell sorter, instrument, equipment | Restricted | https://raw.githubusercontent.com/SciCrunch/RRID-Instruments/refs/heads/main/PDF/SCR_018893.pdf | https://bec-techdocs-prod.s3.us-west-2.amazonaws.com/techdoc/files/ifu/en/B22986EB.pdf?AWSAccessKeyId=ASIA2KJI7HMZ2LIVGGKQ&Expires=1714677977&Signature=NUhKRS0AmHkKA8B0w8HjLbJKEwA%3D&x-amz-security-token=IQoJb3JpZ2luX2VjEAoaCXVzLXdlc3QtMiJHMEUCIEx6nFrj%2FnqQlzHXnA3IEIEojJvZpacwr6mpjViWWJTgAiEAzf0qI2V844ONFBygXgWQGvW3sp6U15S4zbvNTu8elbMq%2BgIIYxAEGgw3MDkyOTI0MDc2MDMiDKy2KN600BLxzSXZ9CrXArQAhXoDa7HakRWxTvFeJnE7Y6XRHdaq3Opce4UsXYCd9ifVecXBHIa%2FMl6SmmJn%2Ff6YB8lPieTfcZ2AGsJvsq61KpgLzz0mDDZmZ%2BJ6SQ8JBkKLaX9ldL%2FgZT3%2FJjjTnjldGXuAnXEcE5guzvUAsZKClU%2FNd82fAzcw0qojPzaS8kREVxW6gieieMNfqMk80NKwhNOfPiu%2FZZ%2F0CRk47wtO7zRb75Wngh%2BKrudOC4lMRnXSmyg1jDWbdm7X8wxJJkTaqtsnwtdjW3t0Q08G3OPPQF8JukVrva3A1JhCWx0d1lzB3ysc3wNE5TAtSvxdWldGyHvABiAthK84dHaAFhE4dYespF0MyB1zdQrB6GQUcT7MWG2p%2BATXd%2FWMku5Yw%2Ba4D1PpP1z89SwFp8LrcYQJmnoNk6JgfTBofY7wRs4H5mn3AOk8aEXcdqMt%2FEUP5Y2woAGtgC8wkJ7PsQY6ngEOXPlGjJzzEpvu4oBQzCGRY9JUbk5514ZEYBhZz5%2FClFdDzI84cDMvcbC28pPRLHy6Lb07ciE%2FhMZtS1JmFrxAlCud78kMh%2BOfBs6HczpQu9KZuc9LSykM8SNL0J5VY9pL%2F7zMi7zjW8NzDpakoxZDxBKF9R4sMS17sUPCSt2959DkY5zQwHi33G%2B6YWTsj4%2BIpyHsCAi9sG6ESJ%2F8pA%3D%3D | SCR_018893 | SciCrunch Registry | MoFlo Astrios Cell Sorter | 2026-10-10 12:40:21 | 13 | ||||||||
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DoubletFinder Resource Report Resource Website 1000+ mentions |
DoubletFinder (RRID:SCR_018771) | data analysis software, data processing software, software application, software resource | Software R package that predicts doublets in single cell RNA sequencing data. Doublet detection in single cell RNA sequencing data using artificial nearest neighbors. Identifies doublets using only gene expression data. | Doublet detection in single cell RNA, single cell RNA, doublet detection, RNA sequencing data, gene expression data, artificial nearest neighbors |
is related to: Seurat has parent organization: University of California at San Francisco; California; USA |
Damon Runyon Cancer Research Foundation ; Department of Defense Breast Cancer Research Program ; NICHD DP2 HD080351; NSF Science and Technology Center ; NSF MCB 1330864; UCSF Center for Cellular Construction |
PMID:30954475 | Free, Available for download, Freely available | SCR_018771 | SciCrunch Registry | 2026-10-10 12:40:20 | 1250 | ||||||||
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Plexon: 16 channel V-Probe Resource Report Resource Website 1+ mentions |
Plexon: 16 channel V-Probe (RRID:SCR_018784) | instrument resource | Linear electrode array used for intracranial electrophysiological recordings. V-Probe is multi-use, multi-site, linear electrode with recording sites positioned on side of sharpened, symmetric cone by Plexon Inc. Minimizes trauma to brain tissue upon insertion. Durable, highly customizable, and often used in acute research with medium to large animals. | Linear electrode, V-Probe, intracranial electrophysiological recording, Plexon Inc., minimizes trauma, brain tissue, insertion, customizable, animal research, instrument, equipment | is listed by: USEDit | Restricted | https://plexon.com/wp-content/uploads/2020/01/Probe-Technical-Guide.pdf | SCR_018784 | SciCrunch Registry | 2026-10-10 12:40:20 | 8 |
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The NIDDK Information Network (dkNET) serves the needs of basic and clinical investigators by providing seamless access to large pools of data and research resources relevant to the mission of The National Institute of Diabetes Digestive and Kidney Diseases (NIDDK). dkNET is hosted at University of California San Diego, and is supported by NIH NIDDK grant U24DK097771.
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