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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
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An efficient P300-based brain-computer interface for disabled subjects Resource Report Resource Website |
An efficient P300-based brain-computer interface for disabled subjects (RRID:SCR_001584) | data or information resource, data set, software resource, source code | A portal containing EEG datasets (in MATLAB format) and the MATLAB software that were used to produce the results in the paper named in the title of this resource. The files published can also be used as a basis for individual research on P300-based brain-computer interfaces. The system is based on the P300 evoked potential and is tested with five severely disabled and four able-bodied subjects. For four of the disabled subjects classification accuracies of 100% are obtained. The bitrates obtained for the disabled subjects range between 10 and 25 bits/min. The effect of different electrode configurations and machine learning algorithms on classification accuracy is tested. | eeg, brain-computer interface, p300, fishers linear discriminant analysis, bayesian linear discriminant analysis, matlab, data set | has parent organization: Ecole Polytechnique Federale de Lausanne; Lausanne; Switzerland | Disabled, Able-bodied, Normal | Swiss National Science Foundation 200020-112313 | PMID:17445904 | Free, Available for download, Freely available | nlx_153820 | SCR_001584 | 2026-08-29 11:28:32 | 0 | ||||||
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UKU Neuroscience and Neurology Links Resource Report Resource Website |
UKU Neuroscience and Neurology Links (RRID:SCR_001733) | data or information resource, information resource, portal | Portal of neuroscience and neurology resources pertaining to the University of Eastern Finland. | neuroscience, neurology, university of eastern finland, public university |
has parent organization: University of Eastern Finland at Kuopio; Kuopio; Finland has parent organization: University of Eastern Finland; Eastern Finland; Finland |
Free | nif-0000-00099 | SCR_001733 | UKU Neuroscience Links, UKU Neurology Links | 2026-08-29 11:28:28 | 0 | ||||||||
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McGill Global Health Resource Guide Resource Report Resource Website |
McGill Global Health Resource Guide (RRID:SCR_001096) | data or information resource, portal | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on August 15,2025. Wiki of resources useful for researchers and clinicians interested in global health. All McGill faculty, clinicians, researchers, staff and students are encouraged to use and add to these resources. If members of the research community would like to contribute to this resource, but are not a member of the McGill community, the McGill community is available for contact. An account will be created for users. | has parent organization: McGill University; Montreal; Canada | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_29904 | SCR_001096 | 2026-08-29 11:28:27 | 0 | ||||||||||
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OpenMM Resource Report Resource Website 10+ mentions |
OpenMM (RRID:SCR_000436) | simulation software, software application, software resource, standalone software | Software toolkit to run modern molecular simulations. It can be used either as a standalone application for running simulations, or as a library that enables accelerated calculations for molecular dynamics on high-performance computer architectures. | modeling, molecular dynamics, molecular simulation |
is used by: CHARMM-GUI is listed by: Simtk.org has parent organization: Stanford University; Stanford; California |
NCI P30 CA008748; NIGMS R01 GM062868; NIGMS U54 GM072970 |
PMID:28746339 PMID:23316124 PMID:38154096 DOI:10.1021/acs.jpcb.3c06662 |
Free, Available for download, Freely available | nif-0000-23334 | https://github.com/openmm/openmm, https://openmm.org/, https://openmm.org/documentation, https://github.com/openmm | https://simtk.org/home/openmm | SCR_000436 | OpenMM 8, OpenMM, OpenMM 7, OpenMM 4 | 2026-08-29 11:28:31 | 12 | ||||
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MNI brain and the Talairach atlas Resource Report Resource Website 50+ mentions |
MNI brain and the Talairach atlas (RRID:SCR_000434) | mni2tal | data or information resource, portal, project portal | Resource that discusses MNI brain, and the difference between the MNI brain and the brain in the Talairach atlas. Approaches to converting MNI coordinates to Talairach coordinates and a few other methods for locating your activation are also presented.Matlab function that transforms MNI coordinates to Talaraich coordinates. The inverse function, tal2mni is also available. | mni coordinate, mri, matlab, talaraich, coordinate |
is used by: Sleuth has parent organization: CBU Imaging Wiki has parent organization: Washington University School of Medicine in St. Louis; Missouri; USA |
Free, Freely available | SciRes_000110, SCR_001965, nif-0000-10537 | SCR_000434 | 2026-08-29 11:28:24 | 86 | ||||||||
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G2P Knowledge Centre Resource Report Resource Website 10+ mentions |
G2P Knowledge Centre (RRID:SCR_000790) | GEN2PHEN | data or information resource, portal, project portal | Portal of GEN2PHEN project, holistic approach to genotype-to-phenotype data. Aims to unify human and model organism genetic variation databases towards increasingly holistic views into Genotype-To-Phenotype (G2P) data, and to link this system into other biomedical knowledge sources via genome browser functionality. | data-sharing enabler, genotype-phenotype, data federation |
is listed by: 3DVC is related to: BioResource Impact Factor |
European Union FP7 | THIS RESOURCE IS NO LONGER IN SERVICE | nif-0000-30605, SCR_013704 | SCR_000790 | GEN2PHEN Knowledge Centre | 2026-08-29 11:28:26 | 16 | ||||||
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Washington University Neuromuscular Disease Center Resource Report Resource Website 10+ mentions |
Washington University Neuromuscular Disease Center (RRID:SCR_002059) | WU Neuromuscular | data or information resource, organization portal, portal | Organization portal for neuromuscular disease community and contains comprehensive listing of biological and clinical aspects of neuromuscular disorders.This knowledge base contains information on the physiology, structure of ion channels, neurotransmitters, neuroreceptors, and associated diseases. Major categories include DISORDERS & SYNDROMES, INDEXES, NEUROMUSCULAR EVALUATION, ANTIBODY TESTING and NEUROMUSCULAR DIVISION. | neuromuscular disease, cerebellum, motor cortex, spinal cord | has parent organization: Washington University in St. Louis; Missouri; USA | Free, Freely available | nif-0000-00158, SCR_007305, nif-0000-12503 | http://neuromuscular.wustl.edu/over/overview.html | http://www.neuro.wustl.edu/neuromuscular/ | SCR_002059 | Neuromuscular Disease Center | 2026-08-29 11:28:30 | 25 | |||||
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Australian Digital Futures Institute Resource Report Resource Website 100+ mentions |
Australian Digital Futures Institute (RRID:SCR_001365) | ADFI | data or information resource, portal |
THIS RESOURCE IS NO LONGER IN SERVICE, documented on December 14, 2016. The Australian Digital Futures Institute no longer exists. It has been replaced by the USQ Digital Life Lab. A portal for the Australian Digital Futures Institute, a cross-institutional, multidisciplinary Institute that focuses on software research for technology-enhanced innovation. |
australia, digital, digital futures institute, technology, innovation | has parent organization: University of Southern Queensland; Queensland; Australia | THIS RESOURCE IS NO LONGER IN SERVICE | nif-0000-07755 | http://adfi.usq.edu.au/blog/ | SCR_001365 | 2026-08-29 11:28:32 | 116 | |||||||
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Human Gene Trap Mutant Collection Resource Report Resource Website |
Human Gene Trap Mutant Collection (RRID:SCR_001634) | biomaterial supply resource, cell repository, material resource | Collection of isogenic human cell lines that are deficient for the expression of single genes. The current collection is based on the human cell line KBM-7 (Kotecki et al. Experimental Cell Research 1999), which is haploid for all chromosomes except chromosome 8 and a small part of chromosome 15. In these cells, genes are disrupted by the means of a retroviral gene trap. The collection is being expanded to cover the majority of expressed genes. The Human Gene Trap Mutant Collection is generated as a public-private partnership between CeMM (the Research Center for Molecular Medicine of the Austrian Academy of Sciences) and Haplogen. | isogenic human cell line, human cell line, deficient expression, kbm 7 | Zentrum fur Innovation und Technologie ; EMBL ALTF1346-2011; ERC ERC-2009-AdG-250179-i-FIVE |
THIS RESOURCE IS NO LONGER IN SERVICE | nlx_153909 | SCR_001634 | 2026-08-29 11:28:28 | 0 | |||||||||
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FluView: A Weekly Influenza Surveillance Report Resource Report Resource Website 1+ mentions |
FluView: A Weekly Influenza Surveillance Report (RRID:SCR_001118) | data or information resource, portal | This page contains the Influenza Surveillance Report during 2008-2009 Influenza Season Week 15, ending April 18, 2009. | influenza, disease, prevention, seasonal, data, portal | has parent organization: Centers for Disease Control and Prevention | CDC | nif-0000-30241 | SCR_001118 | FluView | 2026-08-29 11:28:38 | 2 | ||||||||
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Neural ElectroMagnetic Ontologies (NEMO) Project Resource Report Resource Website 10+ mentions |
Neural ElectroMagnetic Ontologies (NEMO) Project (RRID:SCR_002001) | NEMO | data or information resource, portal, project portal | THIS RESOURCE IS NO LONGER IN SERVICE. NIH tombstone webpage lists Project Period : 2009 - 2013. NIH funded project to create EEG and MEG ontologies and ontology based tools. These resources will be used to support representation, classification, and meta-analysis of brain electromagnetic data. Three pillars of NEMO are: DATA, ONTOLOGY, and DATABASE. NEMO data consist of raw EEG, averaged EEG (ERPs), and ERP data analysis results. NEMO ontologies include concepts related to ERP data (including spatial and temporal features of ERP patterns), data provenance, and cognitive and linguistic paradigms that were used to collect data. NEMO database portal is large repository that stores NEMO consortium data, data analysis results, and data provenance. EEG and MEG ontologies and ontology-based tools to support representation, classification, and meta-analysis of brain electromagnetic data. Raw EEG and ERP data may be uploaded to the NEMO FTP site., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025. | annotation, classification, labeling, eeg, event-related potential, meg, rdf, metadata standard, decomposition, segmentation, extraction, brain, electromagnetic, electrocorticography, information specification, magnetic resonance |
is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) has parent organization: University of Oregon; Oregon; USA is parent organization of: NEMO Ontology |
PMID:22180824 | THIS RESOURCE IS NO LONGER IN SERVICE | nif-0000-10899 | http://www.nitrc.org/projects/nemo, https://sourceforge.net/projects/nemoontologies/ | http://nemo.nic.uoregon.edu | SCR_002001 | Neural ElectroMagnetic Ontologies | 2026-08-29 11:28:29 | 25 | ||||
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skewer Resource Report Resource Website 10+ mentions |
skewer (RRID:SCR_001151) | skewer | data processing software, software application, software resource | Software program for adapter trimming that is specially designed for processing Illumina paired-end sequences. | illumina, unix/linux, c++, adapter trimming, paired-end, sequence, bio.tools |
is listed by: OMICtools is listed by: Debian is listed by: bio.tools has parent organization: SourceForge |
PMID:24925680 | Free, Available for download, Freely available | OMICS_02106, biotools:skewer | https://bio.tools/skewer, https://sources.debian.org/src/skewer/, https://github.com/relipmoc/skewer | SCR_001151 | skewer - A fast and sensitive adapter trimmer for illumina paired-end sequences | 2026-08-29 11:28:32 | 14 | |||||
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Mspire-Simulator Resource Report Resource Website 1+ mentions |
Mspire-Simulator (RRID:SCR_001431) | simulation software, software application, software resource, standalone software | A free, open-source shotgun proteomic simulator that goes beyond previous simulation attempts by generating LC-MS features with realistic m/z and intensity variance along with other noise components. | standalone software, shotgun, proteomic, simulation software, bio.tools |
uses: mzML is listed by: OMICtools is listed by: GitHub is listed by: bio.tools is listed by: Debian has parent organization: Brigham Young University; Utah; USA |
PMID:24090032 | Free, Freely Available | biotools:mspire-simulator, OMICS_03359 | https://bio.tools/mspire-simulator | SCR_001431 | 2026-08-29 11:28:39 | 1 | |||||||
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Sanford-Burnham Medical Research Institute Labs and Facilities Resource Report Resource Website |
Sanford-Burnham Medical Research Institute Labs and Facilities (RRID:SCR_001029) | data or information resource, portal | A portal which lists the various labs and facilities that are part of the Sanford-Burnham Medical Research Institute. | portal, core facility, medical research, institute |
is listed by: ScienceExchange is related to: Sanford-Burnham Histology Core Facility at Lake Nona has parent organization: Sanford Burnham Prebys Medical Discovery Institute |
THIS RESOURCE IS NO LONGER IN SERVICE | SciEx_11229 | SCR_001029 | Sanford Burnham Medical Research Institute Labs and Facilities | 2026-08-29 11:28:38 | 0 | ||||||||
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Office of Research on Womens Health: Reseach Resource Report Resource Website 1+ mentions |
Office of Research on Womens Health: Reseach (RRID:SCR_001822) | data or information resource, organization portal, portal | The mission of the Office of Research on Women's Health (ORWH) is to stimulate and encourage meritorious research on women's health, including the role of sex and gender in health and disease. The priorities signify approaches and areas for which there is a need to stimulate and encourage research on women's health, or sex/gender factors, and the advancement of women in biomedical research careers. These research priorities are not an exclusive list of research areas important to women's health; therefore other innovative or significant research areas should also be considered. The following four overarching themes are important for addressing research on women's health: Lifespan, Sex/Gender Determinants, Health Disparities/Differences and Diversity, ad Interdisciplinary Research. Special Areas of Emphasis - Prevention/Treatment: from basic biological factors, including identifying and validating biomarkers, to risk and its applications to disease prevention, early detection, and treatment. - Sex and Genetics/Pharmacogenomics: genetic, molecular, and cellular basis for action of pharmacologic agents known to have different effects in females than in males. Research on effects of sex as a modifier of gene function and response is under-investigated. Sponsors: This research is funded by the NAtional Institutes of Health. | function, gender, gene, genetic, biological, biomarker, biomedical, cellular, determinant, disease, disparity, diversity, heath, molecular, pharmacogenomics, prevention, sex, treatment, woman | Free | nif-0000-10387 | http://orwh.od.nih.gov/research.html | SCR_001822 | ORWH Research | 2026-08-29 11:28:39 | 1 | ||||||||
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BAliBASE Resource Report Resource Website 10+ mentions |
BAliBASE (RRID:SCR_001940) | BAliBASE | data or information resource, data set, software resource, source code |
A collection of high quality multiple sequence alignments for objective, comparative studies of alignment algorithms. The alignments are constructed based on 3D structure superposition and manually refined to ensure alignment of important functional residues. A number of subsets are defined covering many of the most important problems encountered when aligning real sets of proteins. It is specifically designed to serve as an evaluation resource to address all the problems encountered when aligning complete sequences. The first release provided sets of reference alignments dealing with the problems of high variability, unequal repartition and large N/C-terminal extensions and internal insertions. Version 2.0 of the database incorporates three new reference sets of alignments containing structural repeats, trans-membrane sequences and circular permutations to evaluate the accuracy of detection/prediction and alignment of these complex sequences. Within the resource, users can look at a list of all the alignments, download the whole database by ftp, get the "c" program to compare a test alignment with the BAliBASE reference (The source code for the program is freely available), or look at the results of a comparison study of several multiple alignment programs, using BAliBASE reference sets. |
benchmark alignment, circular permutation, transmembrane sequence, multiple sequence alignment, benchmark, reference alignment, sequence alignment, sequence, alignment |
is listed by: OMICtools has parent organization: University of Strasbourg; Strasbourg; France |
PMID:16044462 PMID:11125126 PMID:10068696 |
Free, Available for download, Freely available | nif-0000-02594, OMICS_00971 | http://www-bio3d-igbmc.u-strasbg.fr/balibase/, http://www-igbmc.u-strasbg.fr/BioInfo/BAliBASE2/index.html | SCR_001940 | Benchmark Alignment dataBASE | 2026-08-29 11:28:29 | 28 | |||||
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I/OWA Resource Report Resource Website |
I/OWA (RRID:SCR_000858) | I/OWA | data processing software, image analysis software, software application, software resource | Software for real-time parametric statistical analysis of functional MRI (fMRI) data. The system that combines a general architecture for sampling and time-stamping relevant information channels in fMRI (image acquisition, stimulation, subject responses, cardiac and respiratory monitors, etc.) and an efficient approach to manipulating these data, featuring incremental subsecond multiple linear regression. The advantages of the system are the simplification of event timing and efficient and unified data formatting. Substantial parametric analysis can be performed and displayed in real-time. Immediate (replay) and delayed off-line analysis can also be performed with the same interface. The system provides a time-accounting infrastructure that readily supports standard and innovative approaches to fMRI. | fmri, real-time, multiple linear regression, brain mapping |
is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) has parent organization: University of Iowa; Iowa; USA |
PMID:11180437 | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_155643 | SCR_000858 | Input/Output time-aWare Architecture, Input / Output time aWare Architecture, I/OWA 3 | 2026-08-29 11:28:32 | 0 | ||||||
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PlantCyc Resource Report Resource Website 1000+ mentions |
PlantCyc (RRID:SCR_002110) | PMN | data or information resource, database, portal, project portal | Multi species reference database. Comprehensive plant biochemical pathway database, containing curated information from literature and computational analyses about genes, enzymes, compounds, reactions, and pathways involved in primary and secondary metabolism. | enzyme, gene, biochemical pathway, compound, metabolism, plant metabolic, reaction, database |
is listed by: Plant Metabolic Network has parent organization: Carnegie Institution for Science |
NSF 0640769; NSF 1026003 |
PMID:20522724 | Free, Available for download, Freely available | , nif-0000-20890, nlx_15806 plant | http://www.plantcyc.org/ | SCR_002110 | 2026-08-29 11:28:39 | 3659 | |||||
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California National Primate Research Center Analytical and Resource Core Resource Report Resource Website 1+ mentions |
California National Primate Research Center Analytical and Resource Core (RRID:SCR_000696) | CNPRC Analytical and Resource Core | biomaterial supply resource, cell repository, material resource | The Analytical and Resource Core provides services and resources to the scientific research community in areas including hematology, clinical chemistry, genetics, immunology, endocrinology, flow cytometry, and pathogen detection. Available resources include biological specimens, viral stocks, DNA, and species-specific reagents. Scientists and staff associated with each of the seven Core Laboratories provide consultation in experimental design, sample collection, and data analysis, and offer assays that utilize species-specific reagents wherever possible. Core Laboratory scientists can also work with users to develop new assays to meet research needs. Training is available for all assays, and Core Laboratories equipment can be made available, typically on a recharge basis. Nonhuman primate resources developed at CNPRC are available to qualified individuals via the Resource Services component of the Core. * Clinical Laboratory * Endocrine Core Laboratory * Flow Cytometry Core Laboratory * Genetics Core Laboratory * Infectious Diseases Immunology Core Laboratory * Pathogen Detection Core Laboratory * Respiratory Disease Immunology Core Laboratory * Affiliated Laboratory: Clinical Proteomics Core Laboratory * Affiliated Laboratory: Microarray Core Facility * Resource Services: The following research resources of CNPRC are available to scientists on a recharge basis. ** Allergen: Characterized protein extracts of house dust mite (Dermatophagoides pteronyssinus and Dermatophagoides farinae) are available for allergen sensitization projects. ** Biological Specimens: Tissues collected at necropsy are available from rhesus monkeys (Macaca mulatta), cynomolgus monkeys (Macaca fascicularis), and titi monkeys (Callicebus cupreus). Contact: Biospecimens (at) primate.ucdavis.edu Blood samples are available through our blood donor program. ** Data: Data for colony animals are available from our computerized database. Data include birth records, weights, reproductive history, relocation history, etc. ** DNA: DNA extracted from peripheral blood mononuclear cells is available on animals of all age-sex classes from known pedigrees. ** Reagents and Samples: Reagents, controls, and known/unknown samples are available from the Pathogen Detection Core Laboratory. Samples include pedigreed sera/plasma, fixed tissues and DNA from macaques and various other species. Validated reagents for many pathogens are available, including SIV, SRV1-5, SFV, STLV, RRV, RhCMV, Herpes B, SV40, and LCV. More information is available at: http://pdl.primate.ucdavis.edu/PDLreagents.html. ** Shipping: Shipping services are available by trained staff who can properly document, package and ship critical experimental materials, including nonhuman primate samples. Assistance is also provided for obtaining CITES permits, required for international shipment of any nonhuman primate samples. ** Transformed B-Cell Lines: Cryopreserved Herpes papio - transformed B cell lines from over 300 rhesus monkeys in the CNPRC colony are available. Transformation of macaque B cells to establish a new cell line is available on request. ** Virus Stock: Rhesus Cytomegalovirus: A unique primary isolate, developed at CNPRC, is available. ** Virus Stock: Simian Immunodeficiency Virus: Aliquots of SIVmac251 and SIVmac239 virus stocks were prepared by propagation in peripheral blood mononuclear cells from rhesus macaques and contain approximately 100,000 50% tissue culture infectious doses per ml. As measured by the commercial SIV branched chain assay, SIVmac251 contains 2 x 109 copies of SIV RNA per ml and SIVmac239 contains 109 copies of SIV RNA per ml. These virus stocks are infectious for rhesus macaques by intravenous, intravaginal and oral routes of inoculation. | hematology, clinical chemistry, genetics, immunology, endocrinology, flow cytometry, pathogen detection, consultation, experimental design, sample collection, data analysis, assay development, clinical, endocrine, infectious disease, pathogen, respiratory disease, proteomics, microarray, macaque, siv, srv1-5, sfv, stlv, rrv, rhcmv, herpes b, sv40, lcv, rhesus monkey, cytomegalovirus, simian immunodeficiency virus, herpes papio, long-tailed macaque, south american titi monkey |
is listed by: One Mind Biospecimen Bank Listing has parent organization: California National Primate Research Center |
Cytomegalovirus, Simian Immunodeficiency Virus, Herpes papio, Respiratory disease, Etc. | NCRR P51 RR000169 | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_151305 | SCR_000696 | California National Primate Research Center Analytical Resource Core | 2026-08-29 11:28:25 | 4 | |||||
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Magnetic Resonance Microscopy of Mouse Embryo Specimens Resource Report Resource Website |
Magnetic Resonance Microscopy of Mouse Embryo Specimens (RRID:SCR_001145) | atlas, data or information resource, video resource | THIS RESOURCE IS NO LONGER IN SERVICE, documented on February 14, 2013. A multidimensional, digital atlas based on magnetic resonance images of normal mouse embryos from 9.5 days after conception (E9) to the newborn (P0). The images include surface views and cross-sectional views from the transverse, coronal, and sagittal planes for each embryo. Several movies have also been included to demonstrate growth of the embryos and to present a variety of visualization tools available for studying and documenting embryonic anatomy. These images are organized as a reference for educators and researchers who want to understand better the embryological anatomy of their own specimens and to understand how their images relate to the whole embryo at many stages of development. | e10, e15, embryology, anatomy, developmental biology, magnetic resonance imaging, mouse, development, newborn mouse, embryonic mouse, stage of development, magnetic resonance microscopy |
is related to: Multi-Dimensional Human Embryo is related to: Brad Smith Magnetic Resonance Imaging of Embryos has parent organization: University of Michigan; Ann Arbor; USA |
Normal | THIS RESOURCE IS NO LONGER IN SERVICE | nif-0000-11003 | SCR_001145 | MRI Embryos | 2026-08-29 11:28:27 | 0 |
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