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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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CEPH2CRI Resource Report Resource Website |
CEPH2CRI (RRID:SCR_009143) | CEPH2CRI | software application, software resource | THIS RESOURCE IS NO LONGER IN SERVCE, documented September 22, 2016. Software application to convert output from CEPH DBMS to CRIMAP format. | gene, genetic, genomic, pascal, ms-dos | is listed by: Genetic Analysis Software | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_154262 | SCR_009143 | 2026-09-12 01:02:40 | 0 | ||||||||
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CC-QLS Resource Report Resource Website 1+ mentions |
CC-QLS (RRID:SCR_009140) | CC-QLS | software application, software resource | Software application (entry from Genetic Analysis Software) | gene, genetic, genomic, unix | is listed by: Genetic Analysis Software | nlx_154259 | SCR_009140 | Case-Control Quasi-Likelihood Score test | 2026-09-12 01:02:40 | 1 | ||||||||
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CCRAVAT Resource Report Resource Website |
CCRAVAT (RRID:SCR_009141) | CCRAVAT | software application, software resource | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on May 16,2026. Software application for enabling the analysis of rare variants in large-scale case control and quantitative trait association studies. CCRaVAT (Case-Control Rare Variant Analysis Tool) and QuTie (Quantitative Trait) are software packages that enable efficient large-scale analysis of rare variants across specific regions or genome-wide. These programs implement a rare variant super-locus or collapsing method that investigates the accumulation of rare variant alleles in either a case-control or quantitative trait study design. (entry from Genetic Analysis Software) | gene, genetic, genomic | is listed by: Genetic Analysis Software | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_154260 | SCR_009141 | Case-Control RAre Variant Analysis Tool QUTIE | 2026-09-12 01:02:40 | 0 | |||||||
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GWAPOWER Resource Report Resource Website 1+ mentions |
GWAPOWER (RRID:SCR_009216) | software application, software resource | A R package for assessing the power of genome-wide association studies using commercially available genotyping chips. The package encapsulates extensive simulation results generated by our program HAPGEN. (entry from Genetic Analysis Software) | gene, genetic, genomic, r | is listed by: Genetic Analysis Software | nlx_154369, nlx_154586, SCR_000847 | SCR_009216 | R/GWAPOWER, Genome-Wide Association POWER | 2026-09-12 01:02:42 | 8 | |||||||||
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GSMA Resource Report Resource Website 1+ mentions |
GSMA (RRID:SCR_009214) | GSMA | software application, software resource | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on October 7,2025. Software application that is a rank-based meta-analysis method for analyzing results from genome-wide linkage searches. A software package is now available. The gsma software calculates the summed rank for any number of studies and bins, then obtains p-values for the Summed Rank and the Ordered Rank statistics, by simulation. Weighted and unweighted analyses are performed. A test data set is included. (entry from Genetic Analysis Software) | gene, genetic, genomic, c++, unix, solaris, ms-dos | is listed by: Genetic Analysis Software | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_154367 | http://mmg.umds.ac.uk/GSMA | SCR_009214 | Genome Search Meta Analysis | 2026-09-12 01:02:42 | 4 | ||||||
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GLUE Resource Report Resource Website 10+ mentions |
GLUE (RRID:SCR_009211) | GLUE | software application, software resource | THIS RESOURCE IS NO LONGER IN SERVCE, documented September 6, 2016. A web interface to several commonly used statistical genetics programs, including Linkage, Genehunter, Merlin, Unphased, and Transmit. It simplifies their use through graphical selection of program options, automation of multiple analyses, and viewing of graphical output. GLUE is available to HGMP account holders; registration is free to all academic users., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025. | gene, genetic, genomic, perl, any web browser, bio.tools |
is listed by: Genetic Analysis Software is listed by: Debian is listed by: bio.tools |
THIS RESOURCE IS NO LONGER IN SERVICE | biotools:GLUE, nlx_154360 | https://bio.tools/GLUE | http://portal.litbio.org/Registered/Webapp/glue/ | SCR_009211 | Genetic Linkage User Environment | 2026-09-12 01:02:42 | 46 | |||||
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MINSAGE Resource Report Resource Website |
MINSAGE (RRID:SCR_009293) | MINSAGE | software application, software resource | Software application to calculate the sample size of genotypes minimally required to ensure that all alleles with a specified frequency at one locus are detected with a given confidence (entry from Genetic Analysis Software) | gene, genetic, genomic, ms-windows | is listed by: Genetic Analysis Software | nlx_154484 | SCR_009293 | MINimal SAmple size for GEnotypes | 2026-09-12 01:02:43 | 0 | ||||||||
|
GHOST Resource Report Resource Website 50+ mentions |
GHOST (RRID:SCR_009209) | GHOST | software application, software resource | Software package for family-based genomewide association (GWA) analysis, with the ability to infer missing genotypes using the Elston-Stewart algorithm. When SNPs from an association panel are less complete (i.e., having more missing genotypes) than markers from a linkage panel, many of the missing genotypes can be determined. GHOST can handle large pedigrees -- when pedigrees are small, Merlin is also recommended for this analysis. (entry from Genetic Analysis Software) | gene, genetic, genomic | is listed by: Genetic Analysis Software | nlx_154357 | SCR_009209 | 2026-09-12 01:02:42 | 69 | |||||||||
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GENTOOLS Resource Report Resource Website 1+ mentions |
GENTOOLS (RRID:SCR_009205) | GENTOOLS | software application, software resource | Software application for analysis and manipulation of genetic linkage data of genetic linkage data, including conversions of pedigree files between CRI-MAP and LINKAGE format. (entry from Genetic Analysis Software) | gene, genetic, genomic, c, unix | is listed by: Genetic Analysis Software | nlx_154352 | http://www.genlink.wustl.edu/software/index.html | SCR_009205 | 2026-09-12 01:02:42 | 6 | ||||||||
|
GEST Resource Report Resource Website 50+ mentions |
GEST (RRID:SCR_009206) | GEST | software application, software resource | Software application (entry from Genetic Analysis Software), THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025. | gene, genetic, genomic | is listed by: Genetic Analysis Software | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_154353 | SCR_009206 | Gene-Environment interaction and STability | 2026-09-12 01:02:42 | 91 | |||||||
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GENOPROOF Resource Report Resource Website 1+ mentions |
GENOPROOF (RRID:SCR_009204) | GENOPROOF | software application, software resource | Software package for the analysis of multiplex PCR kits within the scope of paternity testing, kinship cases and population studies. GenoProof offers: (1) probably the most extensive existing population database for all supported markers of more than 50 ethnic groups, (2) individually configurable quality assurance options, (3) complex concept of user rights in order to guarantee data security, (4) languages German and English (entry from Genetic Analysis Software) | gene, genetic, genomic, java, ms-windows, (95/98/2000/nt/xp) | is listed by: Genetic Analysis Software | nlx_154351 | SCR_009204 | 2026-09-12 01:02:42 | 2 | |||||||||
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GENEVAR Resource Report Resource Website 50+ mentions |
GENEVAR (RRID:SCR_009201) | GENEVAR | software application, software resource | A database and Java tool designed to integrate multiple datasets, and provides analysis and visualization of associations between sequence variation and gene expression in eQTL studies. Genevar allows researchers to investigate eQTL (expression quantitative trait loci) associations within a gene locus of interest in real time. The database and application can be installed on a standard computer in database mode and, in addition, on a server to share discoveries among affiliations or the broader community over the internet via web services protocols. (entry from Genetic Analysis Software) | gene, genetic, genomic, java | is listed by: Genetic Analysis Software | nlx_154342 | SCR_009201 | GENe Expression VARiation | 2026-09-12 01:02:42 | 88 | ||||||||
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MEGASNPHUNTER Resource Report Resource Website 1+ mentions |
MEGASNPHUNTER (RRID:SCR_009287) | MEGASNPHUNTER | software application, software resource | Software application that takes case-control genotype data as input and produces a ranked list of multi-SNP interactions. In particular, the whole genome is first partitioned into multiple short subgenomes and a boosting tree classifier is built for each subgenomes based on multi-SNP interactions and then used to measure the importance of SNPs. The method keeps relatively more important SNPs from all subgenomes and let them compete with each other in the same way at the next level. The competition terminates when the number of selected SNPs is less than the size of a subgenome. (entry from Genetic Analysis Software) | gene, genetic, genomic, parkinson, software application | is listed by: Genetic Analysis Software | Parkinson's disease, Rheumatoid arthritis | nlx_154472 | SCR_009287 | 2026-09-12 01:02:43 | 3 | ||||||||
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MCQTL Resource Report Resource Website 10+ mentions |
MCQTL (RRID:SCR_009285) | MCQTL | software application, software resource | Software package to perform QTL mapping in multi-cross designs that allows the analysis of the usual populations derived from inbred lines and can link the families by assuming that the QTL locations are the same in all them. Moreover, a diallel modelling of the QTL genotypic effects is allowed in multiple related families. Obviously, the analysis of a single cross is also feasible. (entry from Genetic Analysis Software) | gene, genetic, genomic, java, c++, unix, linux | is listed by: Genetic Analysis Software | nlx_154470 | SCR_009285 | Multi-Cross QTL mapping | 2026-09-12 01:02:43 | 10 | ||||||||
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MAPMAKER/QTL Resource Report Resource Website 10+ mentions |
MAPMAKER/QTL (RRID:SCR_009283) | MAPMAKER/QTL | software application, software resource | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on August 23,2022. Software application (entry from Genetic Analysis Software) | gene, genetic, genomic, c, unix, vms, ms-dos, macos | is listed by: Genetic Analysis Software | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_154464 | SCR_009283 | 2026-09-12 01:02:43 | 32 | ||||||||
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MDBLOCKS Resource Report Resource Website 1+ mentions |
MDBLOCKS (RRID:SCR_009280) | MDBLOCKS | software application, software resource | Software application using the mimimum description length model to delineate haplotype blocks (entry from Genetic Analysis Software) | gene, genetic, genomic | is listed by: Genetic Analysis Software | nlx_154461 | SCR_009280 | Minimum Description length method for haplotype BLOCKS | 2026-09-12 01:02:43 | 1 | ||||||||
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HOTSPOTTER Resource Report Resource Website 1+ mentions |
HOTSPOTTER (RRID:SCR_009238) | HOTSPOTTER | software application, software resource | Software application that implements the PAC (Products of Approximate Conditional) model for estimating recombination rate (entry from Genetic Analysis Software), THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025. | gene, genetic, genomic, c++ | is listed by: Genetic Analysis Software | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_154399 | SCR_009238 | 2026-09-12 01:02:42 | 3 | ||||||||
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HOMOG/HOMOGM Resource Report Resource Website |
HOMOG/HOMOGM (RRID:SCR_009237) | software application, software resource | Software application (entry from Genetic Analysis Software) | gene, genetic, genomic, pascal | is listed by: Genetic Analysis Software | nlx_154398 | SCR_009237 | 2026-09-12 01:02:42 | 0 | ||||||||||
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HAPSIMU Resource Report Resource Website 1+ mentions |
HAPSIMU (RRID:SCR_009235) | HAPSIMU | software application, software resource | Software platform that is based on real haplotype data from the HapMap ENCODE project that can simulate heterogeneous populations with various known and controllable structures under the continuous migration model or the discrete model. Moreover, both qualitative and quantitative traits can be simulated using additive genetic model with various genetic parameters designated by users. (entry from Genetic Analysis Software) | gene, genetic, genomic, c++ | is listed by: Genetic Analysis Software | nlx_154394 | SCR_009235 | 2026-09-12 01:02:42 | 3 | |||||||||
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HAPLOTYPER Resource Report Resource Website 10+ mentions |
HAPLOTYPER (RRID:SCR_009232) | HAPLOTYPER | software application, software resource | Software application (entry from Genetic Analysis Software) | gene, genetic, genomic | is listed by: Genetic Analysis Software | nlx_154389 | SCR_009232 | 2026-09-12 01:02:42 | 25 |
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