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http://www.urmc.rochester.edu/smd/biostat/Projects/Help/PC/Software_Listings.htm

Software application for partition of single generation into sibling groups (entry from Genetic Analysis Software)

Proper citation: PRT (RRID:SCR_009340) Copy   

•   Source: SciCrunch Registry

http://acgt.cs.tau.ac.il/psat/

Software application (entry from Genetic Analysis Software)

Proper citation: PSAT (RRID:SCR_009341) Copy   

•   Source: SciCrunch Registry

http://gaow.github.io/genetic-analysis-software/l-1.html#loginserm_estihaplo

Software application (entry from Genetic Analysis Software)

Proper citation: LOGINSERM ESTIHAPLO (RRID:SCR_009258) Copy   

•   Source: SciCrunch Registry

http://compgen.rutgers.edu/multimap/

Software application for conversion of LINKAGE format data files to CRI-MAP format (entry from Genetic Analysis Software)

Proper citation: LNKTOCRI (RRID:SCR_009256) Copy   

•   Source: SciCrunch Registry

http://www.ktl.fi/molbio/software/linkbase/index.html

An easy and practical database-program made for researchers who want to connect the genotype data produced by automatic sequencers ( ABI Prism 377 (Perkin Elmer) and ALF (Pharmacia) ) to linkage and sib-pair programs. (entry from Genetic Analysis Software)

Proper citation: LINKBASE (RRID:SCR_009254) Copy   

•   Source: SciCrunch Registry

https://github.com/gaow/genetic-analysis-software/blob/master/pages/LIPED.md

Software application (entry from Genetic Analysis Software)

Proper citation: LIPED (RRID:SCR_009255) Copy   

•   Source: SciCrunch Registry

http://www.chg.duke.edu/software/pdt.html

Software analysis program to evaluate evidence of linkage disequilibrium (LD) in general pedigree data. All family data may be used without nullifying the validity of the association test, even when there is more than one affected in a family. The PDT program performs both allele-specific and genotype-specific LD analysis of individual markers. Version 5.1 adds the ability to perform genotype-specific analysis over marker sets. (entry from Genetic Analysis Software)

Proper citation: PDT (RRID:SCR_009319) Copy   

•   Source: SciCrunch Registry

http://www.ibms.sinica.edu.tw/~csjfann/first%20flow/programlist.htm

Software tool for analyses of pooled DNA data (entry from Genetic Analysis Software)

Proper citation: PDA (RRID:SCR_009317) Copy   

•   Source: SciCrunch Registry

http://cougar.fhcrc.org/software.php

Software application that is a Windows-based system designed for pedigree data management, providing a graphical interface for pedigree construction and output. (entry from Genetic Analysis Software)

Proper citation: PDPSYS (RRID:SCR_009318) Copy   

•   Source: SciCrunch Registry

http://linkage.rockefeller.edu/pawe/

Software application for power and sample size calculations for genetic case-control association studies allowing for errors (entry from Genetic Analysis Software)

Proper citation: PAWE (RRID:SCR_009316) Copy   

•   Source: SciCrunch Registry

http://lbm.ab.a.u-tokyo.ac.jp/software.html

Software programs that allow a user to get results on segregation ratio, linkage test, recombination value, grouping of markers, ordering of markers by metric multidimensional scaling, drawing map and graphical genotype. ALso QTL analysis by interval mapping and ANOVA are possible. (entry from Genetic Analysis Software)

Proper citation: MAPL (RRID:SCR_009278) Copy   

•   Source: SciCrunch Registry

http://mlemire.freeshell.org/software.html

THIS RESOURCE IS NO LONGER IN SERVICE. Documented on May 16,2023. Software program that splits extended pedigrees into nuclear families, with the option of recoding all sibs as half-sibs with distinct mothers of fathers. (entry from Genetic Analysis Software)

Proper citation: NUCULAR (RRID:SCR_009311) Copy   

•   Source: SciCrunch Registry

http://www.nslij-genetics.org/soft/mapdraw.v2.2.xls

THIS RESOURCE IS NO LONGER IN SERVICE. Documented on January 11, 2023. Software application that draws genetic linkage maps on PC same as what MAPMAKER does on Mac. (entry from Genetic Analysis Software)

Proper citation: MAPDRAW (RRID:SCR_009276) Copy   

•   Source: SciCrunch Registry

http://www.genes.org.uk/software/midas

Software application for analysis and visualisation of interallelic disequilibrium between multiallelic markers (entry from Genetic Analysis Software)

Proper citation: MIDAS (RRID:SCR_009274) Copy   

•   Source: SciCrunch Registry

http://www.biometris.wur.nl/uk/Software/MapChart/

Software application that produces charts of genetic linkage and QTL data. The charts are composed of a sequence of vertical bars representing the linkage groups or chromosomes. On these bars the positions of loci are indicated, and next to the bars QTL intervals and QTL graphs can be shown. MapChart reads the linkage information (i.e. the locus and QTL names and their positions) from text files. Many options to adapt the charts to different purposes. Can produce graphic files (enhanced windows metafile format) which can be enhanced with other MS-Windows software. (entry from Genetic Analysis Software)

Proper citation: MAPCHART (RRID:SCR_009273) Copy   

•   Source: SciCrunch Registry

http://polymorphism.ucsd.edu/cgi-bin/PRL/mama/mama.cgi

Software application (entry from Genetic Analysis Software)

Proper citation: MAMA (RRID:SCR_009270) Copy   

•   Source: SciCrunch Registry

http://magnet.c2b2.columbia.edu/mutagenesys/

Software application that uses genome-wide genotype data to estimate disease susceptibility. Our system integrates three data sources: HapMap, whole-genome marker correlation data, and OMIM database. It accepts SNP data of individuals as query input and delivers disease susceptibility hypotheses even if the original set of typed SNPs is incomplete. (entry from Genetic Analysis Software)

Proper citation: MUTAGENESYS (RRID:SCR_009309) Copy   

•   Source: SciCrunch Registry

http://www.rni.helsinki.fi/~mjs/

Bayesian QTL mapping software for analysing backcross and F2 data from designed crossing experiments of outbred lines (entry from Genetic Analysis Software)

Proper citation: MULTIMAPPER/OUTBRED (RRID:SCR_009306) Copy   

•   Source: SciCrunch Registry

http://droog.gs.washington.edu/multiPopTagSelect.html

Software program that selects a near-minimal set of tagging single-nucleotide polymorphisms (tagSNPs) that account for all observed patterns of linkage disequilibrium (LD) in multiple populations. (entry from Genetic Analysis Software)

Proper citation: MULTIPOPTAGSELECT (RRID:SCR_009307) Copy   

•   Source: SciCrunch Registry

http://www.helsinki.fi/~tsjuntun/multidiseq/

A multipoint linkage analysis software which allows Marker-Marker LD (entry from Genetic Analysis Software)

Proper citation: MULTIDISEQ (RRID:SCR_009304) Copy   

•   Source: SciCrunch Registry