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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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https://www.thermofisher.com/order/catalog/product/4366073#/4366073 Resource Report Resource Website |
https://www.thermofisher.com/order/catalog/product/4366073#/4366073 (RRID:SCR_018377) | Mastermix reagent | SCR_018377 | SciCrunch Registry | 2026-10-10 12:40:18 | 0 | ||||||||||||||
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SymPy Resource Report Resource Website 10+ mentions |
SymPy (RRID:SCR_018417) | software library, software resource, software toolkit | Software Python library for symbolic mathematics. It aims to become full featured computer algebra system (CAS) while keeping code as simple as possible in order to be comprehensible and easily extensible. | Python, Python library, symbolic mathematics, computer algebra system, bio.tools |
is listed by: Debian is listed by: bio.tools |
Free, Available for download, Freely available | biotools:SymPy | https://bio.tools/SymPy | SCR_018417 | SciCrunch Registry | 2026-10-10 12:40:14 | 10 | ||||||||
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multcomp Resource Report Resource Website 10+ mentions |
multcomp (RRID:SCR_018255) | data analysis software, data analytics software, data processing software, software application, software resource | Software R package for simultaneous inference in general parametric models. Offers interface to perform multiple comparisons in general context. Simultaneous tests and confidence intervals for general linear hypotheses in parametric models, including linear, generalized linear, linear mixed effects, and survival models. | Simultaneous inference, parametric model, simultaneous test, confidence interval, linear hypotheses, survival model | is listed by: CRAN | Free, Freely available | http://multcomp.r-forge.r-project.org/ | SCR_018255 | SciCrunch Registry | 2026-10-10 12:40:52 | 26 | |||||||||
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GlycoCalyx: GlycoCheck Resource Report Resource Website 1+ mentions |
GlycoCalyx: GlycoCheck (RRID:SCR_018254) | instrument resource | Microvascular health measurement system that measures endothelial glycocalyx layer of vessels by MicroVascular Health Solutions. Software automatically identifies measurable micro vessels, below 30 µm thickness, during acquisition by contrast between RBC and background. After acquisition, software undergoes series of quality checks to measure vascular segments that are of good quality. Video microscope is placed under tongue, showing live movement of red blood cells as they travel through micro vessels. | Microvascular measurement system, endothelial glycocalyx layer, micro vessel, MicroVascular Health Solutions, video microscope, red blood cell movement, equipment, instrument | DOI:10.1371/journal.pone.0096477 | Restricted | https://glycocheck.com/wp-content/uploads/2021/12/New-GlycoCheck-Brochure.pdf | SCR_018254 | SciCrunch Registry | 2026-10-10 12:40:11 | 2 | |||||||||
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Pyflakes Resource Report Resource Website |
Pyflakes (RRID:SCR_018422) | data analysis software, data processing software, software application, software resource | Software tool to check Python source files for errors. Passive checker of Python programs Used to analyze programs and detect various errors. Works by parsing source file, not importing it, so it is safe to use on modules with side effects. | Python, check Python source file, check file error, analyze program, detect error | Free, Available for download, Freely available | https://github.com/PyCQA/pyflakes | SCR_018422 | SciCrunch Registry | pyflakes 2.2.0 | 2026-10-10 12:40:14 | 0 | |||||||||
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smashpp Resource Report Resource Website 1+ mentions |
smashpp (RRID:SCR_018307) | data analysis software, data processing software, data visualization software, software application, software resource | Software tool to find and visualize rearrangements in DNA sequences. | Find sequence rearrangement, visualize sequence rearrangement, DNA, DNA sequence, DNA sequence rearrangement, bio.tools |
is listed by: Debian is listed by: bio.tools |
Free, Available for download, Freely available | biotools:smashpp, BioTools:smashpp | https://bio.tools/smashpp, https://bio.tools/smashpp, https://bio.tools/smashpp | SCR_018307 | SciCrunch Registry | Smash++ | 2026-10-10 12:40:53 | 2 | |||||||
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FHC: Platinum/Iridium microelectrode Resource Report Resource Website 1+ mentions |
FHC: Platinum/Iridium microelectrode (RRID:SCR_018426) | instrument resource | A platinum/iridium electrode use for stimulating tissue samples. Manufactured by FHC Neural microTargeting Worldwide. | stimulating electrode, microelectrode, metal microelectrode, platinum, platinum and iridium, Pt/Ir, FHC, stimtrode, platinum/iridium electrode, Pt/Ir electrode, stimtrode, Pt/Ir stimtrode | Restricted | SCR_018426 | SciCrunch Registry | 2026-10-10 12:40:54 | 8 | |||||||||||
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DIANA Tools Resource Report Resource Website 10+ mentions |
DIANA Tools (RRID:SCR_018425) | algorithm resource, data or information resource, database, portal, project portal, service resource, software resource | Collection of tools to provide algorithms, databases and software for interpreting and archiving data in systematic framework ranging from analysis of expression regulation from deep sequencing data, annotation of miRNA regulatory elements and targets to interpretation of role of ncRNAs in various diseases and pathways. Includes target prediction algorithms microT v4 and microT-CDS, databases of experimentally verified miRNA targets on coding and non-coding RNAs like TarBase v7.0 and LncBase, and software capable of identifying potentially altered molecular pathways by expression of single or multiple miRNAs , mirPath. Provides Web Server (v5.0) to support series of workflows enabling users to perform miRNA analyses. | miRNA data, miRNA regulatory element, miRNA target annotation, ncRNA, target prediction algorithm, miRNA target database, miRNA analysis |
has parent organization: University of Thessaly; Thessaly; Greece provides: DIANA microT-CDS provides: DIANA-mirExTra provides: DIANA-mirPath provides: TarBase provides: TarBase |
Free, Freely available | SCR_018425 | SciCrunch Registry | 2026-10-10 12:40:14 | 47 | ||||||||||
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GPS-SUMO Resource Report Resource Website 1+ mentions |
GPS-SUMO (RRID:SCR_018261) | data access protocol, data or information resource, portal, service resource, software resource, web service | Web service for prediction of SUMOylation sites and SUMO-interaction motifs in proteins by CUCKOO Workgroup. | Small ubiquitin like modifier, SUMOs, sumoylation, covalently modified protein, group prediction system, site prediction, interaction motif in protein, bio.tools |
is listed by: Debian is listed by: bio.tools |
Guangdong Natural Science Funds for Distinguished Young Scholar ; International Science and Technology Cooperation Program of China ; National Basic Research Program ; National Natural Science Foundation of China ; Zhujiang Nova Program of Guangzhou |
PMID:24880689 | Restricted | biotools:gps-sumo | http://sumosp.biocuckoo.org/online.php, https://bio.tools/gps-sumo | SCR_018261 | SciCrunch Registry | Group-based Prediction System -Small Ubiquitin-like MOdifiers, Small Ubiquitin-like MOdifiers sp, GPS-SUMO 2.0, SUMOsp, GPS Small Ubiquitin-like MOdifiers, Group-based Prediction System-SUMO | 2026-10-10 12:40:52 | 6 | |||||
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R scripts for FLIC data analysis Resource Report Resource Website 10+ mentions |
R scripts for FLIC data analysis (RRID:SCR_018386) | data analysis software, data processing software, software application, software resource, source code | R Code used to analyze FLIC data. Functions are provided to examine interactions with food for single well and food choice experiments when fly makes physical contact with liquid food. | Fly Liquid Food Interaction Counter, FLIC, FLIC data analysis, fly physical contact, liquid food fly interaction, data analysis | PMID:24978054 | Free, Available for download, Freely available | https://github.com/PletcherLab/FLIC_R_Code | SCR_018386 | SciCrunch Registry | R scripts for Fly Liquid Food Interaction Counter data analysis | 2026-10-10 12:40:13 | 14 | ||||||||
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SocOpen Resource Report Resource Website |
SocOpen (RRID:SCR_018384) | SOCOPEN | blog, data or information resource, narrative resource, portal | Portal for information about moderation of social science papers. Home for SocArXiv. Blog and information center. Site hosts announcements of news and developments related to archive, as well as essays that reflect views of listed authors. | SocArXiv, SocArXiv paper, social science paper, social science archive, reflected view essay, listed author view, social science information center | Free, Freely available | SCR_018384 | SciCrunch Registry | 2026-10-10 12:40:13 | 0 | ||||||||||
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CuGenDB Resource Report Resource Website 100+ mentions |
CuGenDB (RRID:SCR_018401) | CuGenDB | data or information resource, database, portal, topical portal | Database to facilitate genomic and genetic data distribution, analysis, mining and integration for cucurbits. To store, mine, analyze, integrate and disseminate Cucurbitaceae family datasets and to provide central portal for cucurbit research and breeding community. Central portal for comparative and functional genomics of cucurbit crops. | Genomic data, genetic data, cucurbit, data distribution, data analysis, data mining, data integration, dataset, comparative genomics, functional genomics, cucurbit crop, FASEB list | International Cucurbit Genomics Initiative ; US-Israel Binational Agricultural Research and Development Fund ; USDA Agricultural Research Service ; USDA National Institute of Food and Agriculture Specialty Crop Research Initiative |
PMID:30321383 | Free, Freely available | SCR_018401 | SciCrunch Registry | Cucurbit Genomics Database, Cucurbitaceae family Genomics Database | 2026-10-10 12:40:13 | 285 | |||||||
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Planmeca Romexis Resource Report Resource Website 1+ mentions |
Planmeca Romexis (RRID:SCR_018403) | data acquisition software, data processing software, image acquisition software, software application, software resource | Software tool as 3D imaging software. Flexible and intuitive all-in-one dental software platform. Provides set of tools to meet imaging needs by any dental facility. | 3D imaging software, dental software, 3D image, dental | Restricted | SCR_018403 | SciCrunch Registry | 2026-10-10 12:40:54 | 1 | |||||||||||
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Biorender Resource Report Resource Website 10000+ mentions |
Biorender (RRID:SCR_018361) | service resource, software resource, web application | Web tool for graphical illustrations for biological systems by BioRender. Used for articles and presentations. Collection of pre made icons and templates from life science fields for scientific illustrations. Customized icons possible on request. | Graphical illustration, biological system, pre made icon, pre made template, scientific illustration, customized icon | Restricted | SCR_018361 | SciCrunch Registry | 2026-10-10 12:40:53 | 26474 | |||||||||||
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Positional Gene Enrichment Resource Report Resource Website 1+ mentions |
Positional Gene Enrichment (RRID:SCR_018360) | PGE | analysis service resource, data access protocol, production service resource, service resource, software resource, web service | Web tool implementing positional gene enrichment analysis of gene sets for high resolution identification of over represented chromosomal regions. | Fund for Scientific Research Flanders ; UGent |
PMID:18346969 | Free, Freely available | http://homes.esat.kuleuven.be/~bioiuser/pge/ | SCR_018360 | SciCrunch Registry | Positional Gene Enrichment, PGE analysis | 2026-10-10 12:40:13 | 1 | |||||||
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SEDFIT Resource Report Resource Website 10+ mentions |
SEDFIT (RRID:SCR_018365) | data analysis software, data processing software, software application, software resource | Software tool for analytical ultracentrifugation developed by Dynamics of Macromolecular Assembly group of Laboratory of Cellular Imaging and Macromolecular Biophysics, National Institute of Biomedical Imaging and Bioengineering, NIH. Used for biophysical analysis of macromolecular assembly. | Analytical ultracentrifugation, biophysical analysis, macromolecular assembly, data, analysis, National Institute of Biomedical Imaging and Bioengineering | is listed by: SoftCite | NIH | Free, Available for download, Freely available | SCR_018365 | SciCrunch Registry | SEDFIT version 14.7g | 2026-10-10 12:40:53 | 32 | ||||||||
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TinderMIX Resource Report Resource Website 1+ mentions |
TinderMIX (RRID:SCR_018364) | data analysis software, data processing software, software application, software resource | Software tool as framework for dose and time dependent gene expression analysis which aims to identify groups of genes that show dynamic dose response behaviour. Software R package to cluster gene expression by contour plots. Used to analyse toxicogenomics data with multiple dose levels and time points and to identify expression patterns with respect to both variables and to cluster molecular features. | Dose dependent gene expression, time dependent gene expression, gene expression analysis, dose response, cluster gene expression, contour plot, toxicogenomics data analysis, time point, dose level, expression pattern identification, data | Free, Available for download, Freely available | https://rdrr.io/github/angy89/TinderMIX/, https://github.com/angy89/TinderMIX/ | SCR_018364 | SciCrunch Registry | Time-Dose INtegrated moDelling of toxicogenomics data | 2026-10-10 12:40:13 | 1 | |||||||||
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PredGPI Resource Report Resource Website 10+ mentions |
PredGPI (RRID:SCR_018363) | analysis service resource, data access protocol, data or information resource, production service resource, service resource, software resource, web service | Prediction system for GPI-anchored proteins. Used to predict presence of GPI-anchor and position of omega site. Prediction server based on support vector machine for discrimination of anchoring signal, and on Hidden Markov Model for prediction of most probable omega site. Method for screening whole proteomes. | GPI anchored protein predictor, GPI anchored protein, predict presence of GPI anchor, predict position of omega site, discrimination of anchoring signal, prediction of probable omega site, data, screening whole proteome | European Union VI Framework Programme ; FIRB 2003 LIBI–International Laboratory of Bioinformatics |
PMID:18811934 | Free, Freely available | SCR_018363 | SciCrunch Registry | 2026-10-10 12:40:13 | 22 | |||||||||
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STARANISO Resource Report Resource Website 50+ mentions |
STARANISO (RRID:SCR_018362) | analysis service resource, data access protocol, production service resource, service resource, software resource, web service | Web server for anisotropy of diffraction limit and Bayesian estimation of structure amplitudes by Global Phasing Limited. Server uses DEBYE and STARANISO software to perform anisotropic cut off of merged intensity data, to perform Bayesian estimation of structure amplitudes and to apply anisotropic correction to data. | Anisotropy, diffraction limit, Bayesian estimation, structure amplitude, Global Phasing Limited, anisotropic cut off, data, anisotropic correction data | Global Phasing Consortium | Free, Freely available | SCR_018362 | SciCrunch Registry | The STARANISO Server, STARANISO Server, STARANISO server | 2026-10-10 12:40:18 | 78 | |||||||||
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Fluidigm: C1 Single-Cell Automated Preparation System Resource Report Resource Website |
Fluidigm: C1 Single-Cell Automated Preparation System (RRID:SCR_018578) | instrument resource | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on November 14,2023.Automated preparation system that isolates and prepares single cell templates for analysis. It can analyze mRNA and DNA sequencing, epigenetics or miRNA expression. It can extract, reverse transcribe, amplify, and analyze gene expression. | Single-Cell Auto Prep System, Instrument, Equipment, Fluidigm, USEDit, ABRF | is listed by: USEDit | THIS RESOURCE IS NO LONGER IN SERVICE | https://raw.githubusercontent.com/SciCrunch/RRID-Instruments/main/PDF/SCR_018578.pdf | SCR_019930, Model_Number_C1 | https://asrc.gc.cuny.edu/instruments/c1-single-cell-autoprep-system/, https://alab.com.pl/produkt-plik/138/2191/MF_Brochure_FY14_C1System_PN100-5477-C1.pdf | SCR_018578 | SciCrunch Registry | 2026-10-10 12:40:55 | 0 |
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The NIDDK Information Network (dkNET) serves the needs of basic and clinical investigators by providing seamless access to large pools of data and research resources relevant to the mission of The National Institute of Diabetes Digestive and Kidney Diseases (NIDDK). dkNET is hosted at University of California San Diego, and is supported by NIH NIDDK grant U24DK097771.
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