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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Bioinformaticsweb Resource Report Resource Website |
Bioinformaticsweb (RRID:SCR_011988) | BIW | data or information resource, portal, topical portal | Open Access Bioinformatics resource portal. | bioinformatics | is listed by: OMICtools | Free | OMICS_01729 | SCR_011988 | 2026-08-21 12:39:21 | 0 | ||||||||
|
HTS Mappers Resource Report Resource Website 1+ mentions |
HTS Mappers (RRID:SCR_011991) | HTS Mappers | data or information resource, data set, software repository, software resource | Data set providing an up-to-date compendium of HTS mappers initially provided in the article Tools for mapping high-throughput sequencing data. Please let fill out the provided form if you are a developer and your mapper is not listed or you want to update the data for your mapper. | mapping, high-throughput sequencing, dna, rna, mirna, bisulfite, mapper |
is listed by: OMICtools has parent organization: European Bioinformatics Institute |
PMID:23060614 | OMICS_01733 | SCR_011991 | 2026-08-21 12:39:37 | 2 | ||||||||
|
Next Generation Sequencing WikiBook Resource Report Resource Website |
Next Generation Sequencing WikiBook (RRID:SCR_011993) | NGS WikiBook | book, data or information resource, narrative resource, wiki | The Need for an Up-To-Date Synthesis of Next Generation Sequencing Know-How. |
is listed by: OMICtools has parent organization: Wikibooks |
OMICS_01744 | SCR_011993 | The NGS WikiBook | 2026-08-21 12:39:49 | 0 | |||||||||
|
GeneTack Resource Report Resource Website 1+ mentions |
GeneTack (RRID:SCR_011953) | GeneTack | analysis service resource, data analysis service, data or information resource, database, production service resource, service resource | Tools for frameshift prediction and a frameshift database. | genomic sequence, transcript sequence, sequence, metagenomic sequence, frameshift |
is listed by: OMICtools has parent organization: Georgia Institute of Technology; Georgia; USA |
OMICS_01540 | SCR_011953 | GeneTack: tools for frameshift prediction | 2026-08-21 12:39:20 | 1 | ||||||||
|
JiffyNet Resource Report Resource Website 1+ mentions |
JiffyNet (RRID:SCR_011954) | analysis service resource, data analysis service, production service resource, service resource, simulation software, software application, software resource | Web based instant protein network modeler for newly sequenced species. Web server designed to instantly construct genome scale protein networks using protein sequence data. Provides network visualization, analysis pages and solution for instant network modeling of newly sequenced species. | protein network, protein, network, genome, sequence, pathway annotation, network visualization, bio.tools |
is listed by: OMICtools is listed by: Debian is listed by: bio.tools has parent organization: Yonsei University; Seoul; South Korea |
National Research Foundation of Korea ; Next-Generation BioGreen 21 Program |
PMID:23685435 | Free, Freely available | OMICS_01548, biotools:jiffynet | https://bio.tools/jiffynet | SCR_011954 | 2026-08-21 12:39:48 | 1 | ||||||
|
TagCleaner Resource Report Resource Website 50+ mentions |
TagCleaner (RRID:SCR_011846) | software application, software resource, standalone software, web application | A software tool which can automatically detect and efficiently remove tag sequences from genomic and metagenomic datasets. | tag sequence, standalone software, web application, microbiome, genomic, metagenomic, datasets |
is listed by: OMICtools is listed by: Human Microbiome Project has parent organization: SourceForge |
Available for download | OMICS_01094 | SCR_011846 | 2026-08-21 12:39:36 | 65 | |||||||||
|
INSDC Resource Report Resource Website 100+ mentions |
INSDC (RRID:SCR_011967) | INSDC | community building portal, data or information resource, portal | International collaboration of the International Nucleotide Sequence Databases (INSD), DDBJ, ENA, and GenBank, maintained for over 18 years. Individuals submitting data to the international sequence databases should be aware of INSDC policy. | nucleotide sequence, FASEB list |
is listed by: OMICtools is affiliated with: DDBJ Sequence Read Archive is related to: DNA DataBank of Japan (DDBJ) is related to: RefSeq is related to: NCBI BioProject is related to: DNA DataBank of Japan (DDBJ) is related to: GenBank is related to: European Nucleotide Archive (ENA) is related to: GenBank is related to: European Nucleotide Archive (ENA) is related to: RefSeq is related to: UniProt Proteomes |
OMICS_01653 | SCR_011967 | International Nucleotide Sequence Database Collaboration | 2026-08-21 12:39:21 | 240 | ||||||||
|
APHL Resource Report Resource Website 10+ mentions |
APHL (RRID:SCR_012001) | APHL | nonprofit organization | Works to strengthen laboratories serving the public''s health in the US and globally. | is listed by: OMICtools | Wikidata: Q4810010, Crossref funder ID: 100008482, ISNI: 0000 0001 0029 6188, OMICS_01790, grid.422961.a | https://ror.org/04d0f7957 | SCR_012001 | Association of Public Health Laboratories | 2026-08-21 12:39:50 | 10 | ||||||||
|
Antibody Portal Resource Report Resource Website |
Antibody Portal (RRID:SCR_011995) | Antibody Portal | antibody supplier, commercial organization, material resource, reagent supplier | Serves as a gateway that provides visible access to a large number of reagents and accompanying characterization data to the research and industrial community. | is listed by: OMICtools | OMICS_01767 | SCR_011995 | 2026-08-21 12:39:37 | 0 | ||||||||||
|
Antibody Validation Database Resource Report Resource Website 10+ mentions |
Antibody Validation Database (RRID:SCR_011996) | Antibody Validation Database | data or information resource, data repository, database, service resource, storage service resource | The aim of this site is to collect and to share experimental results on antibodies that would otherwise remain in laboratories, thus aiding researchers in selection and validation of antibodies. | is listed by: OMICtools | NHGRI U01 HG004258; NHGRI U01 HG004270; OER U01 ES017166 |
The community can contribute to this resource | OMICS_01769 | SCR_011996 | 2026-08-21 12:39:21 | 15 | ||||||||
|
Algal Functional Annotation Tool Resource Report Resource Website |
Algal Functional Annotation Tool (RRID:SCR_012034) | Algal Functional Annotation Tool | analysis service resource, data analysis service, data or information resource, database, production service resource, service resource | Tools to search gene lists for functional term enrichment as well as to dynamically visualize proteins onto pathway maps. Additionally, integrated expression data may be used to discover similarly expressed genes based on a starting gene of interest. | gene, pathway, visualization, annotation, function, protein family, ontology, protein, genomics |
is listed by: OMICtools is related to: Gene Ontology is related to: KEGG is related to: MetaCyc is related to: Reactome is related to: Pfam is related to: InterPro has parent organization: University of California at Los Angeles; California; USA |
DOE ; NAABB ; IGP ; Air Force Office of Scientific Research |
PMID:21749710 | OMICS_02226 | SCR_012034 | 2026-08-21 12:39:37 | 0 | |||||||
|
International Society for Computational Biology Resource Report Resource Website 10+ mentions |
International Society for Computational Biology (RRID:SCR_012009) | ISCB | nonprofit organization | Community building portal that serves over 3,000 members from more than 70 countries by addressing scientific policies, providing access to high quality publications, organizing meetings, and serving as a portal to information about training, education, employment, etc. | is listed by: OMICtools | OMICS_01827, Wikidata: Q4288281, grid.420343.2, ISNI: 0000 0000 8673 7548 | https://ror.org/01jv71z12 | SCR_012009 | International Society for Computational Biology | 2026-08-21 12:39:21 | 37 | ||||||||
|
COBRApy Resource Report Resource Website 100+ mentions |
COBRApy (RRID:SCR_012096) | software resource | Software Python package that provides support for basic COnstraint-Based Reconstruction and Analysis (COBRA) methods. | software package, mac os x, unix/linux, windows, python, bio.tools |
is listed by: OMICtools is listed by: Debian is listed by: bio.tools has parent organization: SourceForge |
PMID:23927696 DOI:10.1186/1752-0509-7-74 |
OMICS_05190, biotools:cobrapy | https://bio.tools/cobrapy | https://sources.debian.org/src/python3-cobra/ | SCR_012096 | COBRA for Python | 2026-08-21 12:39:37 | 341 | ||||||
|
BioSpace Resource Report Resource Website 500+ mentions |
BioSpace (RRID:SCR_012010) | BioSpace | data or information resource, job resource, narrative resource | Online community for industry news and careers for life science professionals. | biotechnology, pharmaceutical, career, clinical, academic, biomedical, medical device | is listed by: OMICtools | The community can contribute to this resource | OMICS_01828 | SCR_012010 | 2026-08-21 12:39:50 | 510 | ||||||||
|
TFClass Resource Report Resource Website 10+ mentions |
TFClass (RRID:SCR_012018) | TFClass | controlled vocabulary, data or information resource, database, ontology | Database that classifies human transcription factors based on the characteristics of their DNA-binding domains. It comprises six levels (superclasses, classes, families, subfamilies, genera and factor species), two of which are optional (subfamilies and factor species). The full classification can also be obtained as html document and as ontology in obo-format., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025. | transcription factor, dna-binding domain, obo | is listed by: OMICtools | BMBF ; European Union FP7 LipidomicNet 202272; European Union FP7 SysCol 258236; DFG FKZ0315890B |
PMID:23180794 | THIS RESOURCE IS NO LONGER IN SERVICE | OMICS_01864 | SCR_012018 | Classification of Human Transcription Factors | 2026-08-21 12:39:37 | 13 | |||||
|
Purdue University Labs and Facilities Resource Report Resource Website |
Purdue University Labs and Facilities (RRID:SCR_012231) | Purdue Labs and Facilities, Purdue Labs & Facilities | access service resource, core facility, data or information resource, portal, service resource | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on April 24,2024. Portal, Core facility |
is listed by: ScienceExchange is related to: Purdue X-Ray Crystallography Facility |
THIS RESOURCE IS NO LONGER IN SERVICE | SciEx_1093 | SCR_012231 | Purdue University Labs & Facilities | 2026-08-21 12:39:53 | 0 | ||||||||
|
OyaGen Resource Report Resource Website |
OyaGen (RRID:SCR_012236) | OyaGen | access service resource, commercial organization, core facility, service resource | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on December 6,2022. OYAGEN is a biotechnology company formed on September 5, 2003, for the purpose of discovering, developing, and commercializing novel pharmaceutical therapies that seek to exploit RNA editing and DNA editing enzymes. OyaGen holds exclusive rights to important technologies originating from the University of Rochester Medical Center (URMC), the Thomas Jefferson University (TJU), and Oregon Health Science Center. | is listed by: ScienceExchange | THIS RESOURCE IS NO LONGER IN SERVICE | SciEx_11240 | SCR_012236 | OyaGen Inc. | 2026-08-21 12:39:39 | 0 | ||||||||
|
Medros Resource Report Resource Website |
Medros (RRID:SCR_012400) | Medros | access service resource, commercial organization, core facility, service resource | An Core facility | is listed by: ScienceExchange | SciEx_13041 | SCR_012400 | Medros Inc. | 2026-08-21 12:39:59 | 0 | |||||||||
|
Boston University Labs and Facilities Resource Report Resource Website |
Boston University Labs and Facilities (RRID:SCR_012335) | BU Labs & Facilities, BU Labs and Facilities | access service resource, core facility, data or information resource, portal, service resource | An Portal, Core facility |
is listed by: ScienceExchange is related to: Boston University Microarray Resource Core has parent organization: Boston University; Massachusetts; USA |
SciEx_1183 | SCR_012335 | Boston University Labs & Facilities | 2026-08-21 12:39:57 | 0 | |||||||||
|
University of Virginia Labs and Facilities Resource Report Resource Website |
University of Virginia Labs and Facilities (RRID:SCR_012339) | UVa Labs and Facilities, UVa Labs & Facilities | access service resource, core facility, service resource | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on April 15,2024. Portal, Core facility |
is listed by: ScienceExchange is related to: UVa Genomics Core Facility has parent organization: University of Virginia; Virginia; USA |
THIS RESOURCE IS NO LONGER IN SERVICE | SciEx_1994 | SCR_012339 | University of Virginia Labs & Facilities | 2026-08-21 12:39:57 | 0 |
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