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SciCrunch Registry is a curated repository of scientific resources, with a focus on biomedical resources, including tools, databases, and core facilities - visit SciCrunch to register your resource.
Open Access Bioinformatics resource portal.
Proper citation: Bioinformaticsweb (RRID:SCR_011988) Copy
http://wwwdev.ebi.ac.uk/fg/hts_mappers/
Data set providing an up-to-date compendium of HTS mappers initially provided in the article Tools for mapping high-throughput sequencing data. Please let fill out the provided form if you are a developer and your mapper is not listed or you want to update the data for your mapper.
Proper citation: HTS Mappers (RRID:SCR_011991) Copy
http://en.wikibooks.org/wiki/Next_Generation_Sequencing
The Need for an Up-To-Date Synthesis of Next Generation Sequencing Know-How.
Proper citation: Next Generation Sequencing WikiBook (RRID:SCR_011993) Copy
http://topaz.gatech.edu/GeneTack/cgi/print_page.cgi?fn=db_home.html&title=Frameshift%20Database
Tools for frameshift prediction and a frameshift database.
Proper citation: GeneTack (RRID:SCR_011953) Copy
Web based instant protein network modeler for newly sequenced species. Web server designed to instantly construct genome scale protein networks using protein sequence data. Provides network visualization, analysis pages and solution for instant network modeling of newly sequenced species.
Proper citation: JiffyNet (RRID:SCR_011954) Copy
http://tagcleaner.sourceforge.net/
A software tool which can automatically detect and efficiently remove tag sequences from genomic and metagenomic datasets.
Proper citation: TagCleaner (RRID:SCR_011846) Copy
International collaboration of the International Nucleotide Sequence Databases (INSD), DDBJ, ENA, and GenBank, maintained for over 18 years. Individuals submitting data to the international sequence databases should be aware of INSDC policy.
Proper citation: INSDC (RRID:SCR_011967) Copy
http://www.aphl.org/Pages/default.aspx
Works to strengthen laboratories serving the public''s health in the US and globally.
Proper citation: APHL (RRID:SCR_012001) Copy
http://antibodies.cancer.gov/apps/site/default
Serves as a gateway that provides visible access to a large number of reagents and accompanying characterization data to the research and industrial community.
Proper citation: Antibody Portal (RRID:SCR_011995) Copy
http://compbio.med.harvard.edu/antibodies/
The aim of this site is to collect and to share experimental results on antibodies that would otherwise remain in laboratories, thus aiding researchers in selection and validation of antibodies.
Proper citation: Antibody Validation Database (RRID:SCR_011996) Copy
http://pathways.mcdb.ucla.edu/algal/
Tools to search gene lists for functional term enrichment as well as to dynamically visualize proteins onto pathway maps. Additionally, integrated expression data may be used to discover similarly expressed genes based on a starting gene of interest.
Proper citation: Algal Functional Annotation Tool (RRID:SCR_012034) Copy
Community building portal that serves over 3,000 members from more than 70 countries by addressing scientific policies, providing access to high quality publications, organizing meetings, and serving as a portal to information about training, education, employment, etc.
Proper citation: International Society for Computational Biology (RRID:SCR_012009) Copy
http://opencobra.sourceforge.net/openCOBRA/Welcome.html
Software Python package that provides support for basic COnstraint-Based Reconstruction and Analysis (COBRA) methods.
Proper citation: COBRApy (RRID:SCR_012096) Copy
Online community for industry news and careers for life science professionals.
Proper citation: BioSpace (RRID:SCR_012010) Copy
http://tfclass.bioinf.med.uni-goettingen.de/tfclass
Database that classifies human transcription factors based on the characteristics of their DNA-binding domains. It comprises six levels (superclasses, classes, families, subfamilies, genera and factor species), two of which are optional (subfamilies and factor species). The full classification can also be obtained as html document and as ontology in obo-format., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025.
Proper citation: TFClass (RRID:SCR_012018) Copy
http://www.scienceexchange.com/facilities/purdue-university
THIS RESOURCE IS NO LONGER IN SERVICE. Documented on April 24,2024. Portal, Core facility
Proper citation: Purdue University Labs and Facilities (RRID:SCR_012231) Copy
http://www.scienceexchange.com/facilities/oyagen-inc
THIS RESOURCE IS NO LONGER IN SERVICE. Documented on December 6,2022. OYAGEN is a biotechnology company formed on September 5, 2003, for the purpose of discovering, developing, and commercializing novel pharmaceutical therapies that seek to exploit RNA editing and DNA editing enzymes. OyaGen holds exclusive rights to important technologies originating from the University of Rochester Medical Center (URMC), the Thomas Jefferson University (TJU), and Oregon Health Science Center.
Proper citation: OyaGen (RRID:SCR_012236) Copy
http://www.scienceexchange.com/facilities/medros-inc
An Core facility
Proper citation: Medros (RRID:SCR_012400) Copy
http://www.scienceexchange.com/facilities/boston-university
An Portal, Core facility
Proper citation: Boston University Labs and Facilities (RRID:SCR_012335) Copy
http://www.scienceexchange.com/facilities/university-of-virginia
THIS RESOURCE IS NO LONGER IN SERVICE. Documented on April 15,2024. Portal, Core facility
Proper citation: University of Virginia Labs and Facilities (RRID:SCR_012339) Copy
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